gag-polypeptide of LTR copia-type
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD00G1146600.v1.1 MD16G1247300.v1.1 |
| pyrus_communis | pycom06g08150 pycom11g18430 pycom12370g00020 pycom13g17960 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 157, 217, 224 |
| AfaI | GTAC | 3 cut(s) | 14, 48, 235 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 24, 250 |
| AgsI | TTSAA | 2 cut(s) | 103, 181 |
| AjnI | CCWGG | 1 cut(s) | 243 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 98, 130 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 43, 75 |
| ApeKI | GCWGC | 3 cut(s) | 154, 214, 239 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 188 |
| BbvI | GCAGC | 3 cut(s) | 166, 201, 226 |
| BciT130I | CCWGG | 1 cut(s) | 245 |
| BfaI | CTAG | 1 cut(s) | 167 |
| BisI | GCNGC | 3 cut(s) | 155, 215, 240 |
| BlsI | GCNGC | 3 cut(s) | 156, 216, 241 |
| BmcAI | AGTACT | 1 cut(s) | 235 |
| Bme1390I | CCNGG | 1 cut(s) | 245 |
| BmrFI | CCNGG | 1 cut(s) | 245 |
| BmsI | GCATC | 1 cut(s) | 211 |
| BpuEI | CTTGAG | 1 cut(s) | 113 |
| Bsa29I | ATCGAT | 1 cut(s) | 144 |
| BsaJI | CCNNGG | 1 cut(s) | 243 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 43, 73 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 24, 250 |
| BseBI | CCWGG | 1 cut(s) | 245 |
| BseCI | ATCGAT | 1 cut(s) | 144 |
| BseDI | CCNNGG | 1 cut(s) | 243 |
| BseGI | GGATG | 1 cut(s) | 226 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 24, 250 |
| BseRI | GAGGAG | 2 cut(s) | 110, 134 |
| BseXI | GCAGC | 3 cut(s) | 166, 201, 226 |
| BshVI | ATCGAT | 1 cut(s) | 144 |
| BsiWI | CGTACG | 1 cut(s) | 12 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 24, 250 |
| BspACI | CCGC | 3 cut(s) | 157, 217, 224 |
| BspDI | ATCGAT | 1 cut(s) | 144 |
| BssECI | CCNNGG | 1 cut(s) | 243 |
| Bst2UI | CCWGG | 1 cut(s) | 245 |
| Bst4CI | ACNGT | 1 cut(s) | 198 |
| BstDEI | CTNAG | 1 cut(s) | 23 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 248 |
| BstF5I | GGATG | 1 cut(s) | 226 |
| BstNI | CCWGG | 1 cut(s) | 245 |
| BstSCI | CCNGG | 1 cut(s) | 243 |
| BstV1I | GCAGC | 3 cut(s) | 166, 201, 226 |
| Bsu15I | ATCGAT | 1 cut(s) | 144 |
| BsuTUI | ATCGAT | 1 cut(s) | 144 |
| BtsCI | GGATG | 1 cut(s) | 226 |
| BtsIMutI | CAGTG | 1 cut(s) | 203 |
| ClaI | ATCGAT | 1 cut(s) | 144 |
| Csp6I | GTAC | 3 cut(s) | 13, 47, 234 |
| CviAII | CATG | 1 cut(s) | 112 |
| CviJI | RGCY | 1 cut(s) | 5 |
| CviKI_1 | RGCY | 1 cut(s) | 5 |
| CviQI | GTAC | 3 cut(s) | 13, 47, 234 |
| DdeI | CTNAG | 1 cut(s) | 23 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 248 |
| EcoRII | CCWGG | 1 cut(s) | 243 |
| FaeI | CATG | 1 cut(s) | 115 |
| FaiI | YATR | 1 cut(s) | 113 |
| FatI | CATG | 1 cut(s) | 111 |
| FauI | CCCGC | 1 cut(s) | 210 |
| Fnu4HI | GCNGC | 3 cut(s) | 155, 215, 240 |
| FokI | GGATG | 1 cut(s) | 233 |
| Fsp4HI | GCNGC | 3 cut(s) | 155, 215, 240 |
| FspBI | CTAG | 1 cut(s) | 167 |
| GluI | GCNGC | 3 cut(s) | 155, 215, 240 |
| Hin1II | CATG | 1 cut(s) | 115 |
| HinfI | GANTC | 1 cut(s) | 74 |
| Hpy188I | TCNGA | 1 cut(s) | 130 |
| Hpy188III | TCNNGA | 2 cut(s) | 167, 181 |
| HpyCH4III | ACNGT | 1 cut(s) | 198 |
| HpyF3I | CTNAG | 1 cut(s) | 23 |
| Hsp92II | CATG | 1 cut(s) | 115 |
| LmnI | GCTCC | 1 cut(s) | 226 |
| LpnPI | CCDG | 2 cut(s) | 230, 257 |
| Lsp1109I | GCAGC | 3 cut(s) | 166, 201, 226 |
| LweI | GCATC | 1 cut(s) | 211 |
| MaeI | CTAG | 1 cut(s) | 167 |
| MboII | GAAGA | 1 cut(s) | 115 |
| MlyI | GAGTC | 1 cut(s) | 83 |
| MmeI | TCCRAC | 2 cut(s) | 96, 217 |
| MnlI | CCTC | 6 cut(s) | 45, 88, 112, 241, 244, 247 |
| MroXI | GAANNNNTTC | 1 cut(s) | 188 |
| MseI | TTAA | 1 cut(s) | 259 |
| MspA1I | CMGCKG | 1 cut(s) | 157 |
| MspR9I | CCNGG | 1 cut(s) | 245 |
| MvaI | CCWGG | 1 cut(s) | 245 |
| NlaIII | CATG | 1 cut(s) | 115 |
| PdmI | GAANNNNTTC | 1 cut(s) | 188 |
| Pfl23II | CGTACG | 1 cut(s) | 12 |
| PkrI | GCNGC | 3 cut(s) | 156, 216, 241 |
| PleI | GAGTC | 1 cut(s) | 82 |
| PpsI | GAGTC | 1 cut(s) | 82 |
| Psp6I | CCWGG | 1 cut(s) | 243 |
| PspGI | CCWGG | 1 cut(s) | 243 |
| PspLI | CGTACG | 1 cut(s) | 12 |
| RsaI | GTAC | 3 cut(s) | 14, 48, 235 |
| RsaNI | GTAC | 3 cut(s) | 13, 47, 234 |
| SaqAI | TTAA | 1 cut(s) | 259 |
| SatI | GCNGC | 3 cut(s) | 155, 215, 240 |
| ScaI | AGTACT | 1 cut(s) | 235 |
| SchI | GAGTC | 1 cut(s) | 83 |
| ScrFI | CCNGG | 1 cut(s) | 245 |
| SetI | ASST | 3 cut(s) | 29, 90, 177 |
| SfaNI | GCATC | 1 cut(s) | 211 |
| SgeI | CNNG | 9 cut(s) | 79, 90, 104, 124, 179, 193, 230, 256, 257 |
| SmlI | CTYRAG | 1 cut(s) | 92 |
| SmoI | CTYRAG | 1 cut(s) | 92 |
| SsiI | CCGC | 3 cut(s) | 157, 217, 224 |
| SspMI | CTAG | 1 cut(s) | 167 |
| StyD4I | CCNGG | 1 cut(s) | 243 |
| TaaI | ACNGT | 1 cut(s) | 198 |
| TaqI | TCGA | 2 cut(s) | 66, 144 |
| TatI | WGTACW | 1 cut(s) | 233 |
| Tru1I | TTAA | 1 cut(s) | 259 |
| Tru9I | TTAA | 1 cut(s) | 259 |
| TscAI | CASTG | 1 cut(s) | 203 |
| TseI | GCWGC | 3 cut(s) | 154, 214, 239 |
| TspDTI | ATGAA | 1 cut(s) | 153 |
| TspGWI | ACGGA | 1 cut(s) | 64 |
| TspRI | CASTG | 1 cut(s) | 203 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 248 |
| XbaI | TCTAGA | 1 cut(s) | 166 |
| XmnI | GAANNNNTTC | 1 cut(s) | 188 |
| XspI | CTAG | 1 cut(s) | 167 |
| ZrmI | AGTACT | 1 cut(s) | 235 |