Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012370

Orthogroup ID

OG0020375

Physical Location & Seq

Genomic Coordinates Forward (+)

10693 .. 10890

Gene Structure 198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12370g00020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGGTGATTGATGGCCGACTTAAACGAATCATCTATGATGATTTCAGAGGATCTAAGACGAAGGTGCACGCCATGCTTGGGCACAACGTTGGGGTACTAGTGCAGAACAATTGTTCTACAGAGTGGGCGTCTTGGAAAAAGGTGCTGGAAGAGCTAAAGAAGTTTATGTTGGATGACTTATCAGTAAGTGTGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000248 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016717 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0070704 GO:0071704 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 ko01130 map00100 map01100 map01110 map01130

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

66

Amino Acids

7.46

Weight (kDa)

8.89

Isoelectric Point (pI)

16.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020375)

Species	Orthologous Gene IDs
malus_domestica	MD00G1146600.v1.1 MD16G1247300.v1.1
pyrus_communis	pycom06g08150 pycom11g18430 pycom12370g00020 pycom13g17960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	87
AclWI	GGATC	1 cut(s)	58
AcoI	YGGCCR	1 cut(s)	13
AcyI	GRCGYC	1 cut(s)	128
AfaI	GTAC	1 cut(s)	96
AfiI	CCNNNNNNNGG	1 cut(s)	78
AhlI	ACTAGT	1 cut(s)	97
AjuI	GAANNNNNNNTTGG	2 cut(s)	152, 184
AluBI	AGCT	1 cut(s)	154
AluI	AGCT	1 cut(s)	154
Alw21I	GWGCWC	1 cut(s)	69
Alw44I	GTGCAC	1 cut(s)	65
AlwI	GGATC	1 cut(s)	58
AoxI	GGCC	1 cut(s)	13
ApaLI	GTGCAC	1 cut(s)	65
AsuHPI	GGTGA	1 cut(s)	16
BaeGI	GKGCMC	2 cut(s)	69, 84
Bbv12I	GWGCWC	1 cut(s)	69
BccI	CCATC	1 cut(s)	5
BcuI	ACTAGT	1 cut(s)	97
BfaI	CTAG	1 cut(s)	98
BfmI	CTRYAG	1 cut(s)	117
BsaHI	GRCGYC	1 cut(s)	128
Bsc4I	CCNNNNNNNGG	1 cut(s)	78
BseGI	GGATG	1 cut(s)	178
BseLI	CCNNNNNNNGG	1 cut(s)	78
BseSI	GKGCMC	2 cut(s)	69, 84
BsgI	GTGCAG	1 cut(s)	122
BshFI	GGCC	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	69
BslI	CCNNNNNNNGG	1 cut(s)	78
BsnI	GGCC	1 cut(s)	15
Bsp1286I	GDGCHC	2 cut(s)	69, 84
Bsp143I	GATC	1 cut(s)	50
BspANI	GGCC	1 cut(s)	15
BspPI	GGATC	1 cut(s)	58
BspQI	GCTCTTC	1 cut(s)	144
BssMI	GATC	1 cut(s)	50
BssNI	GRCGYC	1 cut(s)	128
Bst6I	CTCTTC	1 cut(s)	144
BstACI	GRCGYC	1 cut(s)	128
BstAPI	GCANNNNNTGC	1 cut(s)	73
BstC8I	GCNNGC	1 cut(s)	69
BstDEI	CTNAG	1 cut(s)	54
BstF5I	GGATG	1 cut(s)	178
BstKTI	GATC	1 cut(s)	53
BstMBI	GATC	1 cut(s)	50
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 151
BstSFI	CTRYAG	1 cut(s)	117
BstSLI	GKGCMC	2 cut(s)	69, 84
BstX2I	RGATCY	1 cut(s)	50
BstYI	RGATCY	1 cut(s)	50
BsuRI	GGCC	1 cut(s)	15
BtsCI	GGATG	1 cut(s)	178
Cac8I	GCNNGC	1 cut(s)	69
CseI	GACGC	1 cut(s)	117
Csp6I	GTAC	1 cut(s)	95
CviAII	CATG	1 cut(s)	73
CviJI	RGCY	2 cut(s)	15, 154
CviKI_1	RGCY	2 cut(s)	15, 154
CviQI	GTAC	1 cut(s)	95
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	1 cut(s)	52
DpnII	GATC	1 cut(s)	50
EaeI	YGGCCR	1 cut(s)	13
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
FaeI	CATG	1 cut(s)	76
FaiI	YATR	3 cut(s)	36, 74, 167
FatI	CATG	1 cut(s)	72
FokI	GGATG	1 cut(s)	185
FspBI	CTAG	1 cut(s)	98
HaeIII	GGCC	1 cut(s)	15
HgaI	GACGC	1 cut(s)	117
Hin1I	GRCGYC	1 cut(s)	128
Hin1II	CATG	1 cut(s)	76
HinfI	GANTC	1 cut(s)	27
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	1 cut(s)	47
Hpy8I	GTNNAC	1 cut(s)	67
HpyAV	CCTTC	1 cut(s)	55
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	2 cut(s)	67, 103
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 151
HpyF3I	CTNAG	1 cut(s)	54
HpySE526I	ACGT	1 cut(s)	87
Hsp92I	GRCGYC	1 cut(s)	128
Hsp92II	CATG	1 cut(s)	76
Kzo9I	GATC	1 cut(s)	50
LguI	GCTCTTC	1 cut(s)	144
LpnPI	CCDG	1 cut(s)	131
MaeI	CTAG	1 cut(s)	98
MaeII	ACGT	1 cut(s)	87
MalI	GATC	1 cut(s)	52
MboI	GATC	1 cut(s)	50
MboII	GAAGA	1 cut(s)	161
MfeI	CAATTG	1 cut(s)	109
MflI	RGATCY	1 cut(s)	50
MhlI	GDGCHC	2 cut(s)	69, 84
MluCI	AATT	2 cut(s)	109, 193
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	1 cut(s)	41
MseI	TTAA	1 cut(s)	21
MunI	CAATTG	1 cut(s)	109
MwoI	GCNNNNNNNGC	2 cut(s)	73, 151
NdeII	GATC	1 cut(s)	50
NlaIII	CATG	1 cut(s)	76
PciSI	GCTCTTC	1 cut(s)	144
PfeI	GAWTC	1 cut(s)	27
Psp1406I	AACGTT	1 cut(s)	87
PsuI	RGATCY	1 cut(s)	50
RsaI	GTAC	1 cut(s)	96
RsaNI	GTAC	1 cut(s)	95
SapI	GCTCTTC	1 cut(s)	144
SaqAI	TTAA	1 cut(s)	21
Sau3AI	GATC	1 cut(s)	50
SduI	GDGCHC	2 cut(s)	69, 84
SetI	ASST	4 cut(s)	66, 90, 144, 156
SfcI	CTRYAG	1 cut(s)	117
SgeI	CNNG	6 cut(s)	80, 85, 89, 110, 144, 158
SpeI	ACTAGT	1 cut(s)	97
Sse9I	AATT	2 cut(s)	109, 193
SspMI	CTAG	1 cut(s)	98
TaiI	ACGT	1 cut(s)	90
TasI	AATT	2 cut(s)	109, 193
TfiI	GAWTC	1 cut(s)	27
Tru1I	TTAA	1 cut(s)	21
Tru9I	TTAA	1 cut(s)	21
VneI	GTGCAC	1 cut(s)	65
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.