pycom11g23760

Protein trichome birefringence-like 41

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0022555
Physical Location & Seq
Forward (+)
26778882 .. 26780539
1658 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 315 bp
ATGGGTTTCTGGGTTCATAGTAGTTTTTGCGCTAGGAGTGTAGCTGTTCTCCTCCTCCTTGTTGTTTGGGATTACCAAGCGGTAGTATTAGCAAATGGTGCAAGAAGTGATGAATCAATATCATCGTCATCGTCGTGTGATTTCTTCAAAGGGAGATGGGTTTTGGACCAGTCCTACCCCCTCTACAATACTTCCTCATGCCCCTTCATTGAGCACGAGTTTACCTGCGAAAAGAATGGCCGTCCCGATCAGATATACACGAAATACAGATGGCAACCACATGACTGTGATTTAGCAAGATATAGTACATATTGA

Protein Analysis

105

Amino Acids

12.05

Weight (kDa)

5.82

Isoelectric Point (pI)

55.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 45 - 97 2.7e-25 PMR5 N terminal Domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0022555)

Species Orthologous Gene IDs
pyrus_communis pycom11g23760
rosa_laevigata RLG00000033191
rosa_multiflora Rmu_co8108530.1_g000001
rosa_roxburghii Rroxscaffold_1G00050230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 233
AciI CCGC 1 cut(s) 80
AcoI YGGCCR 1 cut(s) 238
AfaI GTAC 1 cut(s) 307
AgsI TTSAA 1 cut(s) 148
AluBI AGCT 1 cut(s) 44
AluI AGCT 1 cut(s) 44
Alw21I GWGCWC 1 cut(s) 216
AoxI GGCC 1 cut(s) 238
AspLEI GCGC 1 cut(s) 32
AspS9I GGNCC 1 cut(s) 166
AvaII GGWCC 1 cut(s) 166
BauI CACGAG 1 cut(s) 215
Bbv12I GWGCWC 1 cut(s) 216
BccI CCATC 2 cut(s) 150, 264
BceAI ACGGC 1 cut(s) 225
BfaI CTAG 1 cut(s) 33
BfuAI ACCTGC 1 cut(s) 233
Bme18I GGWCC 1 cut(s) 166
BmgT120I GGNCC 1 cut(s) 166
Bse1I ACTGG 1 cut(s) 169
BseNI ACTGG 1 cut(s) 169
BseRI GAGGAG 2 cut(s) 41, 44
BshFI GGCC 1 cut(s) 240
BsiHKAI GWGCWC 1 cut(s) 216
BslFI GGGAC 1 cut(s) 228
BsmFI GGGAC 1 cut(s) 228
BsnI GGCC 1 cut(s) 240
Bsp1286I GDGCHC 1 cut(s) 216
Bsp143I GATC 1 cut(s) 247
BspACI CCGC 1 cut(s) 80
BspANI GGCC 1 cut(s) 240
BspMI ACCTGC 1 cut(s) 233
BsrI ACTGG 1 cut(s) 169
BssMI GATC 1 cut(s) 247
BssSI CACGAG 1 cut(s) 215
Bst2BI CACGAG 1 cut(s) 215
Bst4CI ACNGT 1 cut(s) 287
BstAPI GCANNNNNTGC 1 cut(s) 98
BstHHI GCGC 1 cut(s) 32
BstKTI GATC 1 cut(s) 250
BstMBI GATC 1 cut(s) 247
BstMWI GCNNNNNNNGC 1 cut(s) 98
BsuRI GGCC 1 cut(s) 240
BveI ACCTGC 1 cut(s) 233
CfoI GCGC 1 cut(s) 32
Cfr13I GGNCC 1 cut(s) 166
Csp6I GTAC 1 cut(s) 306
CviAII CATG 2 cut(s) 198, 281
CviJI RGCY 2 cut(s) 44, 240
CviKI_1 RGCY 2 cut(s) 44, 240
CviQI GTAC 1 cut(s) 306
DpnI GATC 1 cut(s) 249
DpnII GATC 1 cut(s) 247
EaeI YGGCCR 1 cut(s) 238
Eco47I GGWCC 1 cut(s) 166
FaeI CATG 2 cut(s) 201, 284
FaiI YATR 6 cut(s) 18, 199, 256, 282, 303, 310
FaqI GGGAC 1 cut(s) 228
FatI CATG 2 cut(s) 197, 280
FspBI CTAG 1 cut(s) 33
GlaI GCGC 1 cut(s) 31
HaeIII GGCC 1 cut(s) 240
HhaI GCGC 1 cut(s) 32
Hin1II CATG 2 cut(s) 201, 284
Hin6I GCGC 1 cut(s) 30
HinP1I GCGC 1 cut(s) 30
HinfI GANTC 1 cut(s) 113
Hpy166II GTNNAC 1 cut(s) 222
Hpy188I TCNGA 1 cut(s) 252
Hpy188III TCNNGA 1 cut(s) 245
Hpy8I GTNNAC 1 cut(s) 222
Hpy99I CGWCG 1 cut(s) 136
HpyAV CCTTC 1 cut(s) 214
HpyCH4III ACNGT 1 cut(s) 287
HpyCH4V TGCA 1 cut(s) 101
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
Hsp92II CATG 2 cut(s) 201, 284
HspAI GCGC 1 cut(s) 30
Kzo9I GATC 1 cut(s) 247
LpnPI CCDG 2 cut(s) 182, 238
MaeI CTAG 1 cut(s) 33
MalI GATC 1 cut(s) 249
MboI GATC 1 cut(s) 247
MboII GAAGA 1 cut(s) 136
MhlI GDGCHC 1 cut(s) 216
MnlI CCTC 4 cut(s) 62, 65, 191, 205
MslI CAYNNNNRTG 2 cut(s) 133, 285
MwoI GCNNNNNNNGC 1 cut(s) 98
NdeII GATC 1 cut(s) 247
NlaIII CATG 2 cut(s) 201, 284
PcsI WCGNNNNNNNCGW 1 cut(s) 131
PfeI GAWTC 1 cut(s) 113
PspPI GGNCC 1 cut(s) 166
RsaI GTAC 1 cut(s) 307
RsaNI GTAC 1 cut(s) 306
RseI CAYNNNNRTG 2 cut(s) 133, 285
Sau3AI GATC 1 cut(s) 247
Sau96I GGNCC 1 cut(s) 166
SduI GDGCHC 1 cut(s) 216
SetI ASST 2 cut(s) 46, 227
SinI GGWCC 1 cut(s) 166
SmiMI CAYNNNNRTG 2 cut(s) 133, 285
SsiI CCGC 1 cut(s) 80
SspMI CTAG 1 cut(s) 33
TaaI ACNGT 1 cut(s) 287
TatI WGTACW 1 cut(s) 305
TfiI GAWTC 1 cut(s) 113
TspDTI ATGAA 3 cut(s) 5, 126, 196
VpaK11BI GGWCC 1 cut(s) 166
XspI CTAG 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.