RLG00000033191

Protein trichome birefringence-like 41

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0022555
Physical Location & Seq
Reverse (-)
24269310 .. 24269875
566 bp
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UTR
Exon/CDS
Intron
RLM00000033191

Sequence Viewer

Length: 330 bp
ATGGGTTCCTGGGTTCGTACCAGTCTTAGCTTCACTGCCATAGCTCTCCTCCATCTTCTTGTTCTTGTTTCTGGTCGGAAAGCAAATGGTGCAAGAAGACGCAGTGAGACGAGTGGTACCTGTGATTTCTTCAATGGGAGATGGGTCTTGGACGAGGCGTACCCACCCTACCATCCCAGCACGTGTCCGTTCATCGAGCGGGAGTTCAGTTGCGAGAAGAATGGCCGAGCTGACCAGGACTACACCAAATACAGATGGCAACCCCATGACTGTAACTTACAGAGGCAGAGAGTCAGAGGTAAAATACTACATTATTATCATATCATATAA

Protein Analysis

110

Amino Acids

12.79

Weight (kDa)

9.42

Isoelectric Point (pI)

61.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 40 - 92 5.4e-24 PMR5 N terminal Domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0022555)

Species Orthologous Gene IDs
pyrus_communis pycom11g23760
rosa_laevigata RLG00000033191
rosa_multiflora Rmu_co8108530.1_g000001
rosa_roxburghii Rroxscaffold_1G00050230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 116
AccB1I GGYRCC 1 cut(s) 116
AccBSI CCGCTC 1 cut(s) 199
AciI CCGC 1 cut(s) 199
AcoI YGGCCR 1 cut(s) 223
AcvI CACGTG 1 cut(s) 183
AfaI GTAC 3 cut(s) 19, 118, 161
AflIII ACRYGT 1 cut(s) 182
AgsI TTSAA 1 cut(s) 133
AjnI CCWGG 2 cut(s) 8, 234
AluBI AGCT 3 cut(s) 30, 44, 230
AluI AGCT 3 cut(s) 30, 44, 230
Alw26I GTCTC 1 cut(s) 101
AoxI GGCC 1 cut(s) 223
Asp718I GGTACC 1 cut(s) 116
BanI GGYRCC 1 cut(s) 116
BbrPI CACGTG 1 cut(s) 183
BbsI GAAGAC 1 cut(s) 103
BccI CCATC 4 cut(s) 60, 135, 180, 249
BciT130I CCWGG 2 cut(s) 10, 236
BcoDI GTCTC 1 cut(s) 101
Bme1390I CCNGG 2 cut(s) 10, 236
BmiI GGNNCC 2 cut(s) 7, 118
BmrFI CCNGG 2 cut(s) 10, 236
BpiI GAAGAC 1 cut(s) 103
BsaAI YACGTR 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 9
Bse1I ACTGG 1 cut(s) 21
BseBI CCWGG 2 cut(s) 10, 236
BseDI CCNNGG 1 cut(s) 9
BseGI GGATG 1 cut(s) 172
BseNI ACTGG 1 cut(s) 21
BseRI GAGGAG 1 cut(s) 38
BseYI CCCAGC 1 cut(s) 176
BshFI GGCC 1 cut(s) 225
BshNI GGYRCC 1 cut(s) 116
BsmAI GTCTC 1 cut(s) 101
BsmBI CGTCTC 1 cut(s) 101
BsnI GGCC 1 cut(s) 225
BspACI CCGC 1 cut(s) 199
BspANI GGCC 1 cut(s) 225
BspLI GGNNCC 2 cut(s) 7, 118
BspT107I GGYRCC 1 cut(s) 116
BsrBI CCGCTC 1 cut(s) 199
BsrI ACTGG 1 cut(s) 21
BssECI CCNNGG 1 cut(s) 9
Bst2UI CCWGG 2 cut(s) 10, 236
Bst4CI ACNGT 1 cut(s) 272
BstAPI GCANNNNNTGC 1 cut(s) 89
BstBAI YACGTR 1 cut(s) 183
BstDEI CTNAG 1 cut(s) 26
BstF5I GGATG 1 cut(s) 172
BstMAI GTCTC 1 cut(s) 101
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstNI CCWGG 2 cut(s) 10, 236
BstSCI CCNGG 2 cut(s) 8, 234
BstV2I GAAGAC 1 cut(s) 103
BsuRI GGCC 1 cut(s) 225
BtsCI GGATG 1 cut(s) 172
BtsI GCAGTG 2 cut(s) 33, 109
BtsIMutI CAGTG 2 cut(s) 33, 109
CseI GACGC 1 cut(s) 108
Csp6I GTAC 3 cut(s) 18, 117, 160
CviAII CATG 1 cut(s) 266
CviJI RGCY 4 cut(s) 30, 44, 225, 230
CviKI_1 RGCY 4 cut(s) 30, 44, 225, 230
CviQI GTAC 3 cut(s) 18, 117, 160
DdeI CTNAG 1 cut(s) 26
EaeI YGGCCR 1 cut(s) 223
Eco72I CACGTG 1 cut(s) 183
EcoRII CCWGG 2 cut(s) 8, 234
Esp3I CGTCTC 1 cut(s) 101
FaeI CATG 1 cut(s) 269
FaiI YATR 5 cut(s) 41, 267, 321, 326, 328
FatI CATG 1 cut(s) 265
FauI CCCGC 1 cut(s) 192
FokI GGATG 1 cut(s) 159
GsaI CCCAGC 1 cut(s) 180
HaeIII GGCC 1 cut(s) 225
HgaI GACGC 1 cut(s) 108
Hin1II CATG 1 cut(s) 269
HinfI GANTC 1 cut(s) 291
Hpy188I TCNGA 2 cut(s) 78, 296
HpyCH4III ACNGT 1 cut(s) 272
HpyCH4IV ACGT 1 cut(s) 182
HpyCH4V TGCA 1 cut(s) 92
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpyF3I CTNAG 1 cut(s) 26
HpySE526I ACGT 1 cut(s) 182
Hsp92II CATG 1 cut(s) 269
KpnI GGTACC 1 cut(s) 120
LpnPI CCDG 7 cut(s) 22, 34, 57, 133, 190, 221, 248
MaeII ACGT 1 cut(s) 182
MaeIII GTNAC 1 cut(s) 272
MbiI CCGCTC 1 cut(s) 199
MboII GAAGA 4 cut(s) 47, 108, 121, 229
MlyI GAGTC 1 cut(s) 300
MmeI TCCRAC 1 cut(s) 56
MnlI CCTC 4 cut(s) 59, 148, 276, 290
MspR9I CCNGG 2 cut(s) 10, 236
MvaI CCWGG 2 cut(s) 10, 236
MwoI GCNNNNNNNGC 1 cut(s) 89
NlaIII CATG 1 cut(s) 269
NlaIV GGNNCC 2 cut(s) 7, 118
NmeAIII GCCGAG 1 cut(s) 251
PleI GAGTC 1 cut(s) 299
PmaCI CACGTG 1 cut(s) 183
PmlI CACGTG 1 cut(s) 183
PpsI GAGTC 1 cut(s) 299
Ppu21I YACGTR 1 cut(s) 183
Psp6I CCWGG 2 cut(s) 8, 234
PspCI CACGTG 1 cut(s) 183
PspFI CCCAGC 1 cut(s) 176
PspGI CCWGG 2 cut(s) 8, 234
PspN4I GGNNCC 2 cut(s) 7, 118
RsaI GTAC 3 cut(s) 19, 118, 161
RsaNI GTAC 3 cut(s) 18, 117, 160
SchI GAGTC 1 cut(s) 300
ScrFI CCNGG 2 cut(s) 10, 236
SetI ASST 6 cut(s) 32, 46, 122, 185, 232, 301
SsiI CCGC 1 cut(s) 199
StyD4I CCNGG 2 cut(s) 8, 234
TaaI ACNGT 1 cut(s) 272
TaiI ACGT 1 cut(s) 185
TaqI TCGA 1 cut(s) 195
TscAI CASTG 2 cut(s) 40, 109
TspDTI ATGAA 1 cut(s) 181
TspGWI ACGGA 1 cut(s) 177
TspRI CASTG 2 cut(s) 40, 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.