Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0022555

Physical Location & Seq

Genomic Coordinates Forward (+)

70764225 .. 70766349

Gene Structure 2125 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00050230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGTGCAAGAAGACGCAGTGAGACCAGTGGTACCTGTGATTTCTTCAATGGGAGATGGGTCTTGGATGAGGCATACGGCGTACCCACTCTACCATACCAGCACGTGTCCGTTCATCGAGCGGGAGTTCAGTTGCGAGAAGAATGGCCAAGCTGACCAGGACTACACCAAATACAGATGGCAACCCCATGACTGTAACTTACAGAGTGGTTATATGGCACCTGAATATGCAATGCGGGGTTATCTAACGATAAAGCAGATGTTTATAGTTTCGGAATTCTTGTATTGGAAATGGTCAGTGGAAGGTGCAATACAACTTACTGCTCAAAGGAAGAATGTTTTTATCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

116

Amino Acids

13.65

Weight (kDa)

6.26

Isoelectric Point (pI)

53.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	19 - 66	5.7e-19	PMR5 N terminal Domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0022555)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g23760
rosa_laevigata	RLG00000033191
rosa_multiflora	Rmu_co8108530.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	31
AccB1I	GGYRCC	2 cut(s)	31, 217
AccBSI	CCGCTC	1 cut(s)	121
AciI	CCGC	2 cut(s)	121, 235
AcoI	YGGCCR	1 cut(s)	145
AcsI	RAATTY	1 cut(s)	275
AcvI	CACGTG	1 cut(s)	105
AfaI	GTAC	2 cut(s)	33, 83
AflIII	ACRYGT	1 cut(s)	104
AgsI	TTSAA	1 cut(s)	48
AjnI	CCWGG	1 cut(s)	156
AluBI	AGCT	1 cut(s)	152
AluI	AGCT	1 cut(s)	152
Alw26I	GTCTC	1 cut(s)	16
AoxI	GGCC	1 cut(s)	145
ApoI	RAATTY	1 cut(s)	275
Asp718I	GGTACC	1 cut(s)	31
BalI	TGGCCA	1 cut(s)	147
BanI	GGYRCC	2 cut(s)	31, 217
BarI	GAAGNNNNNNTAC	2 cut(s)	294, 326
BbrPI	CACGTG	1 cut(s)	105
BbsI	GAAGAC	1 cut(s)	18
BccI	CCATC	2 cut(s)	50, 171
BceAI	ACGGC	1 cut(s)	93
BciT130I	CCWGG	1 cut(s)	158
BcoDI	GTCTC	1 cut(s)	16
BfaI	CTAG	1 cut(s)	349
Bme1390I	CCNGG	1 cut(s)	158
BmiI	GGNNCC	2 cut(s)	33, 219
BmrFI	CCNGG	1 cut(s)	158
BpiI	GAAGAC	1 cut(s)	18
BsaAI	YACGTR	1 cut(s)	105
BsaI	GGTCTC	1 cut(s)	16
Bse1I	ACTGG	1 cut(s)	26
Bse3DI	GCAATG	1 cut(s)	237
BseBI	CCWGG	1 cut(s)	158
BseGI	GGATG	1 cut(s)	72
BseMI	GCAATG	1 cut(s)	237
BseNI	ACTGG	1 cut(s)	26
BshFI	GGCC	1 cut(s)	147
BshNI	GGYRCC	2 cut(s)	31, 217
BsmAI	GTCTC	1 cut(s)	16
BsnI	GGCC	1 cut(s)	147
Bso31I	GGTCTC	1 cut(s)	16
BspACI	CCGC	2 cut(s)	121, 235
BspANI	GGCC	1 cut(s)	147
BspLI	GGNNCC	2 cut(s)	33, 219
BspT107I	GGYRCC	2 cut(s)	31, 217
BspTNI	GGTCTC	1 cut(s)	16
BsrBI	CCGCTC	1 cut(s)	121
BsrDI	GCAATG	1 cut(s)	237
BsrI	ACTGG	1 cut(s)	26
Bst2UI	CCWGG	1 cut(s)	158
Bst4CI	ACNGT	1 cut(s)	194
BstBAI	YACGTR	1 cut(s)	105
BstF5I	GGATG	1 cut(s)	72
BstMAI	GTCTC	1 cut(s)	16
BstNI	CCWGG	1 cut(s)	158
BstSCI	CCNGG	1 cut(s)	156
BstV2I	GAAGAC	1 cut(s)	18
BsuRI	GGCC	1 cut(s)	147
BtsCI	GGATG	1 cut(s)	72
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	3 cut(s)	24, 33, 303
CseI	GACGC	1 cut(s)	23
Csp6I	GTAC	2 cut(s)	32, 82
CviAII	CATG	1 cut(s)	188
CviJI	RGCY	2 cut(s)	147, 152
CviKI_1	RGCY	2 cut(s)	147, 152
CviQI	GTAC	2 cut(s)	32, 82
EaeI	YGGCCR	1 cut(s)	145
Eco31I	GGTCTC	1 cut(s)	16
Eco72I	CACGTG	1 cut(s)	105
EcoRI	GAATTC	1 cut(s)	275
EcoRII	CCWGG	1 cut(s)	156
FaeI	CATG	1 cut(s)	191
FaiI	YATR	7 cut(s)	75, 96, 189, 213, 215, 228, 266
FatI	CATG	1 cut(s)	187
FauI	CCCGC	2 cut(s)	114, 228
FokI	GGATG	1 cut(s)	79
FspBI	CTAG	1 cut(s)	349
HaeIII	GGCC	1 cut(s)	147
HgaI	GACGC	1 cut(s)	23
Hin1II	CATG	1 cut(s)	191
Hpy188I	TCNGA	1 cut(s)	274
HpyAV	CCTTC	1 cut(s)	296
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4IV	ACGT	1 cut(s)	104
HpyCH4V	TGCA	3 cut(s)	7, 230, 308
HpySE526I	ACGT	1 cut(s)	104
Hsp92II	CATG	1 cut(s)	191
KpnI	GGTACC	1 cut(s)	35
LpnPI	CCDG	6 cut(s)	39, 48, 112, 143, 170, 234
MaeI	CTAG	1 cut(s)	349
MaeII	ACGT	1 cut(s)	104
MaeIII	GTNAC	1 cut(s)	194
MbiI	CCGCTC	1 cut(s)	121
MboII	GAAGA	5 cut(s)	23, 36, 151, 337, 343
MlsI	TGGCCA	1 cut(s)	147
MluCI	AATT	1 cut(s)	275
MluNI	TGGCCA	1 cut(s)	147
MnlI	CCTC	1 cut(s)	63
Mox20I	TGGCCA	1 cut(s)	147
MscI	TGGCCA	1 cut(s)	147
Msp20I	TGGCCA	1 cut(s)	147
MspR9I	CCNGG	1 cut(s)	158
MvaI	CCWGG	1 cut(s)	158
NlaIII	CATG	1 cut(s)	191
NlaIV	GGNNCC	2 cut(s)	33, 219
PmaCI	CACGTG	1 cut(s)	105
PmlI	CACGTG	1 cut(s)	105
Ppu21I	YACGTR	1 cut(s)	105
Psp6I	CCWGG	1 cut(s)	156
PspCI	CACGTG	1 cut(s)	105
PspGI	CCWGG	1 cut(s)	156
PspN4I	GGNNCC	2 cut(s)	33, 219
RsaI	GTAC	2 cut(s)	33, 83
RsaNI	GTAC	2 cut(s)	32, 82
ScrFI	CCNGG	1 cut(s)	158
SetI	ASST	5 cut(s)	37, 107, 154, 223, 307
Sse9I	AATT	1 cut(s)	275
SsiI	CCGC	2 cut(s)	121, 235
SspMI	CTAG	1 cut(s)	349
StyD4I	CCNGG	1 cut(s)	156
TaaI	ACNGT	1 cut(s)	194
TaiI	ACGT	1 cut(s)	107
TaqI	TCGA	1 cut(s)	117
TasI	AATT	1 cut(s)	275
TscAI	CASTG	3 cut(s)	24, 33, 303
TspDTI	ATGAA	1 cut(s)	103
TspGWI	ACGGA	1 cut(s)	99
TspRI	CASTG	3 cut(s)	24, 33, 303
XapI	RAATTY	1 cut(s)	275
XspI	CTAG	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.