Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012397

Orthogroup ID

OG0017960

Physical Location & Seq

Genomic Coordinates Forward (+)

136271 .. 136876

Gene Structure 606 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGTCACGTTACAGAGGGCCTCGTTTCAAAAAAATTCGTCGTCTGGGGGCTTTACCGGGACTAACTAGTAAAAAGCCTAGAGCCGGAAGCGATCTTAGAAACCAATCGCGCCCCGGAAAAAAATCTCAATATCGTATTCGTTTAGAAGAAAAACAAAAATTGCGCTTTCATTATGGTCTTACAGAACAACAATTACTTAAATACGTTCGTATCGCCGGAAAAGCCAAAGGATCAACAGGTCAGGTTTTACTACAATTACTTGAAATGCGTTTGGATAACATCCTTTTTCGATTGGGTATGGCTTCGACTATTCCTCAAGCCCGCCAATTAGTTAACCATAGACATATTTTAGTTAATGGTCGTATAGTAGATATACCAAGTTATCGCTGTAAACCCCGAGATATTATTACAGTGAGGGATGAGCAAAAATCGAGGGCTCTGATTCAAAATTATCTTGATTCATCCCCCCGCGAGGAGTTGCCAAACCATTTGACTCTTCACCCATTCCAATATGAAGGATTCGTCAATCAAATAATAGATAGTAAATGGGTCGGTTTGAAAATAAATGAATTGCTAGTTGTAGAATATTACTCTCGTCAGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0006417 GO:0006450 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0015935 GO:0016020 GO:0019222 GO:0019843 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0032991 GO:0034248 GO:0034250 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0045903 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S4 S4

Protein Analysis

202

Amino Acids

23.48

Weight (kDa)

10.51

Isoelectric Point (pI)

40.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S4	PF00163	3 - 88	1.3e-16	Ribosomal protein S4/S9 N-terminal domain
S4	PF01479	89 - 136	1.7e-20	S4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0017960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00380
pyrus_communis	pycom12397g00290
rosa_laevigata	RLG00000000043 RLG00000000111 RLG00000000168 RLG00000000226 RLG00000000262 RLG00000000289 RLG00000000295 RLG00000000345 RLG00000037110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	109, 471
AciI	CCGC	2 cut(s)	322, 469
AclWI	GGATC	1 cut(s)	238
AcsI	RAATTY	1 cut(s)	33
AfiI	CCNNNNNNNGG	2 cut(s)	83, 472
AgsI	TTSAA	4 cut(s)	28, 263, 446, 559
AhlI	ACTAGT	1 cut(s)	65
AlwI	GGATC	1 cut(s)	238
Ama87I	CYCGRG	1 cut(s)	396
AoxI	GGCC	1 cut(s)	17
ApoI	RAATTY	1 cut(s)	33
AspLEI	GCGC	2 cut(s)	111, 165
AspS9I	GGNCC	1 cut(s)	17
AsuC2I	CCSGG	2 cut(s)	57, 114
AsuHPI	GGTGA	1 cut(s)	491
AvaI	CYCGRG	1 cut(s)	396
BaeI	ACNNNNGTAYC	2 cut(s)	193, 226
BanII	GRGCYC	1 cut(s)	439
BcnI	CCSGG	2 cut(s)	57, 114
BcuI	ACTAGT	1 cut(s)	65
BfaI	CTAG	3 cut(s)	66, 78, 575
Bme1390I	CCNGG	2 cut(s)	57, 114
BmeT110I	CYCGRG	1 cut(s)	396
BmgT120I	GGNCC	1 cut(s)	17
BmrFI	CCNGG	2 cut(s)	57, 114
BpuEI	CTTGAG	1 cut(s)	300
BpuMI	CCSGG	2 cut(s)	57, 114
BsaJI	CCNNGG	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 472
BseDI	CCNNGG	1 cut(s)	112
BseGI	GGATG	3 cut(s)	279, 424, 461
BseLI	CCNNNNNNNGG	2 cut(s)	83, 472
BseRI	GAGGAG	1 cut(s)	488
Bsh1236I	CGCG	2 cut(s)	109, 471
BshFI	GGCC	1 cut(s)	19
BsiHKCI	CYCGRG	1 cut(s)	396
BsiSI	CCGG	4 cut(s)	56, 84, 114, 216
BslFI	GGGAC	1 cut(s)	72
BslI	CCNNNNNNNGG	2 cut(s)	83, 472
BsmFI	GGGAC	1 cut(s)	72
BsnI	GGCC	1 cut(s)	19
BsoBI	CYCGRG	1 cut(s)	396
Bsp1286I	GDGCHC	1 cut(s)	439
Bsp143I	GATC	2 cut(s)	91, 230
BspACI	CCGC	2 cut(s)	322, 469
BspANI	GGCC	1 cut(s)	19
BspFNI	CGCG	2 cut(s)	109, 471
BspPI	GGATC	1 cut(s)	238
BssECI	CCNNGG	1 cut(s)	112
BssMI	GATC	2 cut(s)	91, 230
Bst4CI	ACNGT	1 cut(s)	412
Bst6I	CTCTTC	1 cut(s)	501
BstC8I	GCNNGC	1 cut(s)	322
BstDEI	CTNAG	1 cut(s)	95
BstF5I	GGATG	3 cut(s)	279, 424, 461
BstFNI	CGCG	2 cut(s)	109, 471
BstHHI	GCGC	2 cut(s)	111, 165
BstKTI	GATC	2 cut(s)	94, 233
BstMBI	GATC	2 cut(s)	91, 230
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstSCI	CCNGG	2 cut(s)	55, 112
BstUI	CGCG	2 cut(s)	109, 471
BsuRI	GGCC	1 cut(s)	19
BtsCI	GGATG	3 cut(s)	279, 424, 461
BtsIMutI	CAGTG	1 cut(s)	417
Cac8I	GCNNGC	1 cut(s)	322
CfoI	GCGC	2 cut(s)	111, 165
Cfr13I	GGNCC	1 cut(s)	17
CviJI	RGCY	8 cut(s)	19, 50, 76, 83, 224, 302, 320, 437
CviKI_1	RGCY	8 cut(s)	19, 50, 76, 83, 224, 302, 320, 437
DdeI	CTNAG	1 cut(s)	95
DpnI	GATC	2 cut(s)	93, 232
DpnII	GATC	2 cut(s)	91, 230
Eam1104I	CTCTTC	1 cut(s)	501
EarI	CTCTTC	1 cut(s)	501
Eco24I	GRGCYC	1 cut(s)	439
Eco88I	CYCGRG	1 cut(s)	396
EcoO109I	RGGNCCY	1 cut(s)	17
EcoT38I	GRGCYC	1 cut(s)	439
FaiI	YATR	7 cut(s)	174, 299, 339, 345, 365, 374, 513
FaqI	GGGAC	1 cut(s)	72
FauI	CCCGC	2 cut(s)	329, 476
FokI	GGATG	3 cut(s)	266, 431, 448
FriOI	GRGCYC	1 cut(s)	439
FspBI	CTAG	3 cut(s)	66, 78, 575
GlaI	GCGC	2 cut(s)	110, 164
HaeIII	GGCC	1 cut(s)	19
HapII	CCGG	4 cut(s)	56, 84, 114, 216
HhaI	GCGC	2 cut(s)	111, 165
Hin6I	GCGC	2 cut(s)	109, 163
HinP1I	GCGC	2 cut(s)	109, 163
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HinfI	GANTC	4 cut(s)	442, 458, 493, 519
HpaI	GTTAAC	1 cut(s)	334
HpaII	CCGG	4 cut(s)	56, 84, 114, 216
HphI	GGTGA	1 cut(s)	491
Hpy166II	GTNNAC	2 cut(s)	334, 392
Hpy188I	TCNGA	2 cut(s)	441, 600
Hpy188III	TCNNGA	1 cut(s)	455
Hpy8I	GTNNAC	2 cut(s)	334, 392
Hpy99I	CGWCG	1 cut(s)	42
HpyAV	CCTTC	1 cut(s)	509
HpyCH4III	ACNGT	1 cut(s)	412
HpyCH4IV	ACGT	2 cut(s)	7, 204
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
HpyF3I	CTNAG	1 cut(s)	95
HpySE526I	ACGT	2 cut(s)	7, 204
HspAI	GCGC	2 cut(s)	109, 163
KspAI	GTTAAC	1 cut(s)	334
Kzo9I	GATC	2 cut(s)	91, 230
LpnPI	CCDG	7 cut(s)	29, 69, 97, 127, 222, 227, 229
MaeI	CTAG	3 cut(s)	66, 78, 575
MaeII	ACGT	2 cut(s)	7, 204
MaeIII	GTNAC	2 cut(s)	3, 8
MalI	GATC	2 cut(s)	93, 232
MboI	GATC	2 cut(s)	91, 230
MboII	GAAGA	2 cut(s)	158, 488
MhlI	GDGCHC	1 cut(s)	439
MluCI	AATT	7 cut(s)	33, 158, 191, 254, 326, 448, 569
MlyI	GAGTC	1 cut(s)	487
MnlI	CCTC	6 cut(s)	8, 30, 324, 408, 426, 466
MseI	TTAA	4 cut(s)	198, 333, 354, 604
MspI	CCGG	4 cut(s)	56, 84, 114, 216
MspR9I	CCNGG	2 cut(s)	57, 114
MvnI	CGCG	2 cut(s)	109, 471
MwoI	GCNNNNNNNGC	1 cut(s)	221
NciI	CCSGG	2 cut(s)	57, 114
NdeII	GATC	2 cut(s)	91, 230
NmuCI	GTSAC	1 cut(s)	3
PfeI	GAWTC	3 cut(s)	442, 458, 519
PleI	GAGTC	1 cut(s)	487
PpsI	GAGTC	1 cut(s)	487
PspPI	GGNCC	1 cut(s)	17
PsrI	GAACNNNNNNTAC	2 cut(s)	177, 209
SaqAI	TTAA	4 cut(s)	198, 333, 354, 604
Sau3AI	GATC	2 cut(s)	91, 230
Sau96I	GGNCC	1 cut(s)	17
SchI	GAGTC	1 cut(s)	487
ScrFI	CCNGG	2 cut(s)	57, 114
SduI	GDGCHC	1 cut(s)	439
SetI	ASST	4 cut(s)	10, 207, 241, 246
SmlI	CTYRAG	1 cut(s)	315
SmoI	CTYRAG	1 cut(s)	315
SpeI	ACTAGT	1 cut(s)	65
Sse9I	AATT	7 cut(s)	33, 158, 191, 254, 326, 448, 569
SsiI	CCGC	2 cut(s)	322, 469
SspI	AATATT	1 cut(s)	587
SspMI	CTAG	3 cut(s)	66, 78, 575
StyD4I	CCNGG	2 cut(s)	55, 112
TaaI	ACNGT	1 cut(s)	412
TaiI	ACGT	2 cut(s)	10, 207
TaqI	TCGA	3 cut(s)	289, 305, 431
TasI	AATT	7 cut(s)	33, 158, 191, 254, 326, 448, 569
TfiI	GAWTC	3 cut(s)	442, 458, 519
Tru1I	TTAA	4 cut(s)	198, 333, 354, 604
Tru9I	TTAA	4 cut(s)	198, 333, 354, 604
TscAI	CASTG	1 cut(s)	417
TseFI	GTSAC	1 cut(s)	3
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	4 cut(s)	158, 450, 528, 582
TspRI	CASTG	1 cut(s)	417
XapI	RAATTY	1 cut(s)	33
XspI	CTAG	3 cut(s)	66, 78, 575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.