Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012419

Orthogroup ID

OG0024614

Physical Location & Seq

Genomic Coordinates Reverse (-)

53718 .. 55976

Gene Structure 2259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12419g00030.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGCGGCAAGGAGAGAGCTCGTTTCTCTAATTCTTCAGTATTTGGAGGAAGACAAATACATGGAGACTGTTCACAGGTTGGAGAAAGAGTCCGGGTTTTTCTTCAATATGAAGTATCTTGAGGAAATTGTGACAAATGGTGATTGGGAGGAGGTGGAGAACTACTTGTCAGGATTTACTAAGGTTGAGGACAATAGACACTCATTGAAGATTTTCTTTGAGATTCGGAAACAAAGATACCTTGAGGCTCTTGACAGTCATGATAATGATAAAGCTGTTGAGATTCTTCAGAAGGATTTGAAAGCATTCTCGTCTATCAATCCAGAGATTTTCAAGGAAATAACGATGCTTCTAACATTGGAGAATTTCAGGGAGAATGAGCAACTATCAAGCTATGGTGATGCTAAGACTGGCAGGGCTATAATGCTTGCAGAACTGAAAAAGGTAATTGAGGCAAATCCAATTTTCCATGATAAGCTTGAATTCCCCAACTTTAAGAAGTCAAGGCTGAGGACATTGATCAATCAGAGTTTAAACTGGCAGCACCATCTTTGCAATAATCCTAGGCAAAACCCTGACATAAAAACTCTATTTTGGGACCATAGTTGTGGACCAGGTGCTTGTGCTACTTCCCCTGCAATTAACCCTTTAATGGGATCCATTCCAAAAGTAGGTGGCTTTCTACCAATAGGTGCTCATGGTCCTGCAGCACCTCCTTTGGCATCTCTGCCTGGCTGGATGGCTAACCCATCCTTGGCTCCATACCAAACAGTTTCTTCTGGGCCAATCAGTTTAACAGTTCCCAATAATACATGTATGATTGCATTTGATTTTCTTATTTCCGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0090421

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

283

Amino Acids

31.99

Weight (kDa)

5.79

Isoelectric Point (pI)

39.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024614)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g02270 pycom12419g00030 pycom15g15100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	2 cut(s)	651, 664
AcsI	RAATTY	2 cut(s)	364, 482
AcuI	CTGAAG	2 cut(s)	20, 272
AfiI	CCNNNNNNNGG	4 cut(s)	652, 653, 671, 754
AflIII	ACRYGT	1 cut(s)	812
AgsI	TTSAA	5 cut(s)	106, 208, 301, 334, 482
AjnI	CCWGG	2 cut(s)	613, 730
AluBI	AGCT	4 cut(s)	19, 275, 393, 478
AluI	AGCT	4 cut(s)	19, 275, 393, 478
Alw21I	GWGCWC	2 cut(s)	21, 697
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	2 cut(s)	651, 664
AoxI	GGCC	1 cut(s)	782
ApeKI	GCWGC	2 cut(s)	541, 707
ApoI	RAATTY	2 cut(s)	364, 482
Asp700I	GAANNNNTTC	2 cut(s)	212, 305
AspA2I	CCTAGG	1 cut(s)	563
AspS9I	GGNCC	4 cut(s)	598, 611, 701, 782
AsuC2I	CCSGG	1 cut(s)	94
AsuHPI	GGTGA	2 cut(s)	152, 410
AvaII	GGWCC	3 cut(s)	598, 611, 701
AvrII	CCTAGG	1 cut(s)	563
BamHI	GGATCC	1 cut(s)	656
BanII	GRGCYC	1 cut(s)	21
BbsI	GAAGAC	1 cut(s)	57
Bbv12I	GWGCWC	2 cut(s)	21, 697
BbvCI	CCTCAGC	1 cut(s)	509
BbvI	GCAGC	2 cut(s)	553, 719
BccI	CCATC	3 cut(s)	555, 733, 757
BciT130I	CCWGG	2 cut(s)	615, 732
BclI	TGATCA	1 cut(s)	519
BcnI	CCSGG	1 cut(s)	94
BcoDI	GTCTC	1 cut(s)	59
BfaI	CTAG	1 cut(s)	564
BfmI	CTRYAG	1 cut(s)	705
BisI	GCNGC	3 cut(s)	6, 542, 708
BlnI	CCTAGG	1 cut(s)	563
BlsI	GCNGC	3 cut(s)	7, 543, 709
Bme1390I	CCNGG	3 cut(s)	94, 615, 732
Bme18I	GGWCC	3 cut(s)	598, 611, 701
BmgT120I	GGNCC	4 cut(s)	598, 611, 701, 782
BmiI	GGNNCC	3 cut(s)	599, 658, 759
BmrFI	CCNGG	3 cut(s)	94, 615, 732
BmsI	GCATC	3 cut(s)	336, 391, 731
BpiI	GAAGAC	1 cut(s)	57
Bpu10I	CCTNAGC	1 cut(s)	509
BpuEI	CTTGAG	2 cut(s)	140, 263
BpuMI	CCSGG	1 cut(s)	94
BsaJI	CCNNGG	2 cut(s)	563, 753
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	4 cut(s)	652, 653, 671, 754
Bse1I	ACTGG	2 cut(s)	415, 542
BseBI	CCWGG	2 cut(s)	615, 732
BseDI	CCNNGG	2 cut(s)	563, 753
BseGI	GGATG	2 cut(s)	744, 749
BseLI	CCNNNNNNNGG	4 cut(s)	652, 653, 671, 754
BseMII	CTCAG	1 cut(s)	500
BseNI	ACTGG	2 cut(s)	415, 542
BseRI	GAGGAG	1 cut(s)	164
BseXI	GCAGC	2 cut(s)	553, 719
BshFI	GGCC	1 cut(s)	784
BsiHKAI	GWGCWC	2 cut(s)	21, 697
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	611
BslI	CCNNNNNNNGG	4 cut(s)	652, 653, 671, 754
BsmAI	GTCTC	1 cut(s)	59
BsmFI	GGGAC	1 cut(s)	611
BsmI	GAATGC	1 cut(s)	305
BsnI	GGCC	1 cut(s)	784
Bsp1286I	GDGCHC	2 cut(s)	21, 697
Bsp143I	GATC	2 cut(s)	519, 656
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	784
BspCNI	CTCAG	1 cut(s)	501
BspHI	TCATGA	1 cut(s)	259
BspLI	GGNNCC	3 cut(s)	599, 658, 759
BspMAI	CTGCAG	1 cut(s)	709
BspPI	GGATC	2 cut(s)	651, 664
BsrI	ACTGG	2 cut(s)	415, 542
BssECI	CCNNGG	2 cut(s)	563, 753
BssMI	GATC	2 cut(s)	519, 656
BssT1I	CCWWGG	2 cut(s)	563, 753
Bst2UI	CCWGG	2 cut(s)	615, 732
Bst4CI	ACNGT	4 cut(s)	70, 257, 772, 799
BstC8I	GCNNGC	1 cut(s)	429
BstDEI	CTNAG	3 cut(s)	180, 405, 509
BstF5I	GGATG	2 cut(s)	744, 749
BstKTI	GATC	2 cut(s)	522, 659
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	2 cut(s)	519, 656
BstNI	CCWGG	2 cut(s)	615, 732
BstNSI	RCATGY	1 cut(s)	816
BstSCI	CCNGG	3 cut(s)	92, 613, 730
BstSFI	CTRYAG	1 cut(s)	705
BstV1I	GCAGC	2 cut(s)	553, 719
BstV2I	GAAGAC	1 cut(s)	57
BstX2I	RGATCY	1 cut(s)	656
BstXI	CCANNNNNNTGG	1 cut(s)	608
BstYI	RGATCY	1 cut(s)	656
BsuRI	GGCC	1 cut(s)	784
BtsCI	GGATG	2 cut(s)	744, 749
Cac8I	GCNNGC	1 cut(s)	429
CciI	TCATGA	1 cut(s)	259
Cfr13I	GGNCC	4 cut(s)	598, 611, 701, 782
CsiI	ACCWGGT	1 cut(s)	613
CviAII	CATG	5 cut(s)	61, 260, 470, 698, 813
DdeI	CTNAG	3 cut(s)	180, 405, 509
DpnI	GATC	2 cut(s)	521, 658
DpnII	GATC	2 cut(s)	519, 656
DraI	TTTAAA	1 cut(s)	534
Ecl136II	GAGCTC	1 cut(s)	19
Eco130I	CCWWGG	2 cut(s)	563, 753
Eco24I	GRGCYC	1 cut(s)	21
Eco47I	GGWCC	3 cut(s)	598, 611, 701
Eco53kI	GAGCTC	1 cut(s)	19
Eco57I	CTGAAG	2 cut(s)	20, 272
EcoICRI	GAGCTC	1 cut(s)	19
EcoRI	GAATTC	1 cut(s)	482
EcoRII	CCWGG	2 cut(s)	613, 730
EcoT14I	CCWWGG	2 cut(s)	563, 753
EcoT38I	GRGCYC	1 cut(s)	21
ErhI	CCWWGG	2 cut(s)	563, 753
FaeI	CATG	5 cut(s)	64, 263, 473, 701, 816
FalI	AAGNNNNNCTT	2 cut(s)	200, 232
FaqI	GGGAC	1 cut(s)	611
FatI	CATG	5 cut(s)	60, 259, 469, 697, 812
FbaI	TGATCA	1 cut(s)	519
Fnu4HI	GCNGC	3 cut(s)	6, 542, 708
FokI	GGATG	2 cut(s)	736, 751
FriOI	GRGCYC	1 cut(s)	21
Fsp4HI	GCNGC	3 cut(s)	6, 542, 708
FspBI	CTAG	1 cut(s)	564
GluI	GCNGC	3 cut(s)	6, 542, 708
HaeIII	GGCC	1 cut(s)	784
HapII	CCGG	1 cut(s)	93
Hin1II	CATG	5 cut(s)	64, 263, 473, 701, 816
HindIII	AAGCTT	1 cut(s)	476
HinfI	GANTC	3 cut(s)	89, 223, 283
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	2 cut(s)	152, 410
Hpy166II	GTNNAC	2 cut(s)	73, 611
Hpy188I	TCNGA	3 cut(s)	228, 291, 528
Hpy188III	TCNNGA	5 cut(s)	119, 171, 251, 260, 323
Hpy8I	GTNNAC	2 cut(s)	73, 611
HpyAV	CCTTC	1 cut(s)	286
HpyCH4III	ACNGT	4 cut(s)	70, 257, 772, 799
HpyCH4V	TGCA	5 cut(s)	431, 555, 638, 707, 824
HpyF3I	CTNAG	3 cut(s)	180, 405, 509
Hsp92II	CATG	5 cut(s)	64, 263, 473, 701, 816
Ksp22I	TGATCA	1 cut(s)	519
Kzo9I	GATC	2 cut(s)	519, 656
LmnI	GCTCC	1 cut(s)	763
Lsp1109I	GCAGC	2 cut(s)	553, 719
LweI	GCATC	3 cut(s)	336, 391, 731
MabI	ACCWGGT	1 cut(s)	613
MaeI	CTAG	1 cut(s)	564
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	2 cut(s)	521, 658
MboI	GATC	2 cut(s)	519, 656
MboII	GAAGA	6 cut(s)	26, 62, 94, 220, 278, 768
MflI	RGATCY	1 cut(s)	656
MhlI	GDGCHC	2 cut(s)	21, 697
MluCI	AATT	7 cut(s)	30, 126, 364, 447, 462, 482, 639
MlyI	GAGTC	1 cut(s)	98
MmeI	TCCRAC	1 cut(s)	60
MnlI	CCTC	9 cut(s)	40, 115, 142, 145, 181, 238, 445, 504, 723
MroXI	GAANNNNTTC	2 cut(s)	212, 305
MseI	TTAA	5 cut(s)	495, 533, 642, 650, 794
MslI	CAYNNNNRTG	2 cut(s)	264, 606
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	3 cut(s)	94, 615, 732
MssI	GTTTAAAC	1 cut(s)	534
Mva1269I	GAATGC	1 cut(s)	305
MvaI	CCWGG	2 cut(s)	615, 732
NciI	CCSGG	1 cut(s)	94
NdeII	GATC	2 cut(s)	519, 656
NlaIII	CATG	5 cut(s)	64, 263, 473, 701, 816
NlaIV	GGNNCC	3 cut(s)	599, 658, 759
NmuCI	GTSAC	1 cut(s)	130
NspI	RCATGY	1 cut(s)	816
PagI	TCATGA	1 cut(s)	259
PciI	ACATGT	1 cut(s)	812
PctI	GAATGC	1 cut(s)	305
PdmI	GAANNNNTTC	2 cut(s)	212, 305
PfeI	GAWTC	2 cut(s)	223, 283
PkrI	GCNGC	3 cut(s)	7, 543, 709
PleI	GAGTC	1 cut(s)	97
PmeI	GTTTAAAC	1 cut(s)	534
PpsI	GAGTC	1 cut(s)	97
PscI	ACATGT	1 cut(s)	812
Psp124BI	GAGCTC	1 cut(s)	21
Psp6I	CCWGG	2 cut(s)	613, 730
PspGI	CCWGG	2 cut(s)	613, 730
PspN4I	GGNNCC	3 cut(s)	599, 658, 759
PspPI	GGNCC	4 cut(s)	598, 611, 701, 782
PstI	CTGCAG	1 cut(s)	709
PsuI	RGATCY	1 cut(s)	656
RseI	CAYNNNNRTG	2 cut(s)	264, 606
SacI	GAGCTC	1 cut(s)	21
SaqAI	TTAA	5 cut(s)	495, 533, 642, 650, 794
SatI	GCNGC	3 cut(s)	6, 542, 708
Sau3AI	GATC	2 cut(s)	519, 656
Sau96I	GGNCC	4 cut(s)	598, 611, 701, 782
SchI	GAGTC	1 cut(s)	98
ScrFI	CCNGG	3 cut(s)	94, 615, 732
SduI	GDGCHC	2 cut(s)	21, 697
SexAI	ACCWGGT	1 cut(s)	613
SfaNI	GCATC	3 cut(s)	336, 391, 731
SfcI	CTRYAG	1 cut(s)	705
SinI	GGWCC	3 cut(s)	598, 611, 701
SmiMI	CAYNNNNRTG	2 cut(s)	264, 606
SmlI	CTYRAG	2 cut(s)	119, 242
SmoI	CTYRAG	2 cut(s)	119, 242
Sse9I	AATT	7 cut(s)	30, 126, 364, 447, 462, 482, 639
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	1 cut(s)	564
SstI	GAGCTC	1 cut(s)	21
StyD4I	CCNGG	3 cut(s)	92, 613, 730
StyI	CCWWGG	2 cut(s)	563, 753
TaaI	ACNGT	4 cut(s)	70, 257, 772, 799
TasI	AATT	7 cut(s)	30, 126, 364, 447, 462, 482, 639
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	223, 283
Tru1I	TTAA	5 cut(s)	495, 533, 642, 650, 794
Tru9I	TTAA	5 cut(s)	495, 533, 642, 650, 794
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	2 cut(s)	541, 707
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	1 cut(s)	125
TspGWI	ACGGA	1 cut(s)	832
VpaK11BI	GGWCC	3 cut(s)	598, 611, 701
XapI	RAATTY	2 cut(s)	364, 482
XceI	RCATGY	1 cut(s)	816
XmaJI	CCTAGG	1 cut(s)	563
XmnI	GAANNNNTTC	2 cut(s)	212, 305
XspI	CTAG	1 cut(s)	564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.