Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0024614

Physical Location & Seq

Genomic Coordinates Forward (+)

10486518 .. 10489073

Gene Structure 2556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g15100.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGTCCTCGCTTAGCAGAGAGCTCGTTTTTCTCATACTTCAGTTTCTGGATGAAGAGAAATTCAAAGACAGTGTTCACAAGTTGGAACAAGAGTCAGGGTTTTTCTTTAACATGAGGTACTTTGAGGACATGGTGACAACTGGGGAGTGGGAGGAGGTGGAGAAGTATTTGTCCGGTTTCACCAAGGTTGACGATAATCGATACTCTATGAAGATTTTCTTCGAGATTCGCAAGCAGAAGTACCTTGAAGCTTTGGACAAGAGGGATCGAGCAAAAGCTGTGGACATTTTAGTTAAGGACTTGAAAGTTTTTGCAGCATTTAATGAGGAACTTTTCAAGGAAATTACACAGCTGTTGACTTTGGAGAACTTTAGGGATAATGAACAGTTATCTAAATATGGTGATACTAAGTCTGCAAGGAGTATAATGCTTGCTGAACTGAAAAAGTTAATAGAGGCTAACCCATTGTTTCGTGACAAACTTCAATTTCCTACCCTGAAGAACTCGAGACTGCGAACTCTTATTAATCAGAGTTTAAACTGGCAGCATCAGCTTTGTAAGAGCCCAAAGCCTAATCCAGACATAAAGACCCTGTTTGTAGACCACAGTTGTGGACAACCAAATGGTACCAGGGCTCCATCCCCTGTCACTAATCACTTAATGGGAGCAGTCCCTAAGACGGGGGGTTTCCCTCCATTGGGTGCTCACGGGCCCTTTCAGCCCACACCAGCTGCTCTTCCAACATCTCTTGCTGGATGGATGGCAAATCCATCACCTGTGGCTGTACCTCATCCCTCAGCTTCTGCTGGGCCTCTTGGGTTGGCCGCAGCTAACAATGCAGCCACCTTAAAGCGCCCTAGGACTCCTCCAACCAGTAACCCAACTATGGACTATCAAACAGCTGATTCTGAGCACGTTCTGAAGAGATCAAGACCTTTCGGGATAACAGATGAGGCCAATAATCTGCCAGTAAATATGCTGCCTGTTGTGTATCCTAATCAGAGCCATGGTCAGAGTTCCTACTCTTCTGATGACTTGCCCAGGTCTGTTGTTATGACTTTACGTCCAGGTTCAACTGTCAAGAGTATGGATTTCCACCCAGTGCAACAAATTTTACTTCTTGGTAATTGGAACAAACATGGGCGATGTCATGGTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0090421

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

387

Amino Acids

43.38

Weight (kDa)

8.91

Isoelectric Point (pI)

44.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024614)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g02270 pycom12419g00030 pycom15g15100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	626
AccB1I	GGYRCC	1 cut(s)	626
AccI	GTMKAC	1 cut(s)	600
AciI	CCGC	1 cut(s)	825
AclWI	GGATC	1 cut(s)	273
AcoI	YGGCCR	1 cut(s)	822
AcsI	RAATTY	2 cut(s)	59, 1110
AcuI	CTGAAG	3 cut(s)	23, 518, 941
AdeI	CACNNNGTG	1 cut(s)	1102
AfaI	GTAC	4 cut(s)	119, 242, 628, 786
AfiI	CCNNNNNNNGG	5 cut(s)	679, 680, 697, 698, 886
AgsI	TTSAA	6 cut(s)	64, 248, 304, 337, 485, 1074
AhdI	GACNNNNNGTC	1 cut(s)	1062
AjnI	CCWGG	3 cut(s)	629, 1040, 1066
AleI	CACNNNNGTG	1 cut(s)	609
AluBI	AGCT	9 cut(s)	22, 251, 278, 352, 553, 731, 800, 830, 902
AluI	AGCT	9 cut(s)	22, 251, 278, 352, 553, 731, 800, 830, 902
Alw21I	GWGCWC	3 cut(s)	24, 706, 915
Alw26I	GTCTC	1 cut(s)	502
AlwI	GGATC	1 cut(s)	273
AlwNI	CAGNNNCTG	2 cut(s)	46, 803
Ama87I	CYCGRG	1 cut(s)	505
AoxI	GGCC	4 cut(s)	710, 809, 822, 954
ApaI	GGGCCC	1 cut(s)	714
ApeKI	GCWGC	6 cut(s)	314, 544, 731, 827, 839, 979
ApoI	RAATTY	2 cut(s)	59, 1110
AseI	ATTAAT	1 cut(s)	525
Asp700I	GAANNNNTTC	1 cut(s)	215
Asp718I	GGTACC	1 cut(s)	626
AspA2I	CCTAGG	1 cut(s)	857
AspLEI	GCGC	1 cut(s)	855
AspS9I	GGNCC	3 cut(s)	710, 711, 809
AsuHPI	GGTGA	4 cut(s)	145, 172, 413, 765
AvaI	CYCGRG	1 cut(s)	505
AvrII	CCTAGG	1 cut(s)	857
BaeGI	GKGCMC	1 cut(s)	714
BanI	GGYRCC	1 cut(s)	626
BanII	GRGCYC	4 cut(s)	24, 566, 637, 714
Bbv12I	GWGCWC	3 cut(s)	24, 706, 915
BbvCI	CCTCAGC	1 cut(s)	796
BbvI	GCAGC	6 cut(s)	326, 556, 718, 839, 851, 966
BccI	CCATC	4 cut(s)	646, 750, 754, 778
BcgI	CGANNNNNNTGC	2 cut(s)	4, 38
BciT130I	CCWGG	3 cut(s)	631, 1042, 1068
BciVI	GTATCC	1 cut(s)	1002
BcoDI	GTCTC	1 cut(s)	502
BfaI	CTAG	1 cut(s)	858
BfoI	RGCGCY	1 cut(s)	856
BfuI	GTATCC	1 cut(s)	1002
BisI	GCNGC	7 cut(s)	315, 545, 732, 825, 828, 840, 980
BlnI	CCTAGG	1 cut(s)	857
BlpI	GCTNAGC	1 cut(s)	11
BlsI	GCNGC	7 cut(s)	316, 546, 733, 826, 829, 841, 981
Bme1390I	CCNGG	3 cut(s)	631, 1042, 1068
BmeRI	GACNNNNNGTC	1 cut(s)	1062
BmeT110I	CYCGRG	1 cut(s)	505
BmgT120I	GGNCC	3 cut(s)	710, 711, 809
BmiI	GGNNCC	3 cut(s)	628, 636, 712
BmrFI	CCNGG	3 cut(s)	631, 1042, 1068
BmrI	ACTGGG	2 cut(s)	150, 1094
BmsI	GCATC	1 cut(s)	556
BmuI	ACTGGG	2 cut(s)	150, 1094
Bpu10I	CCTNAGC	1 cut(s)	796
Bpu1102I	GCTNAGC	1 cut(s)	11
Bsa29I	ATCGAT	1 cut(s)	199
BsaJI	CCNNGG	5 cut(s)	183, 630, 857, 1006, 1040
BsaWI	WCCGGW	1 cut(s)	173
BsaXI	ACNNNNNCTCC	2 cut(s)	619, 649
Bsc4I	CCNNNNNNNGG	5 cut(s)	679, 680, 697, 698, 886
Bse1I	ACTGG	5 cut(s)	145, 545, 873, 968, 1100
BseBI	CCWGG	3 cut(s)	631, 1042, 1068
BseCI	ATCGAT	1 cut(s)	199
BseDI	CCNNGG	5 cut(s)	183, 630, 857, 1006, 1040
BseGI	GGATG	5 cut(s)	55, 638, 761, 765, 790
BseLI	CCNNNNNNNGG	5 cut(s)	679, 680, 697, 698, 886
BseMII	CTCAG	2 cut(s)	810, 900
BseNI	ACTGG	5 cut(s)	145, 545, 873, 968, 1100
BseRI	GAGGAG	2 cut(s)	167, 855
BseSI	GKGCMC	1 cut(s)	714
BseXI	GCAGC	6 cut(s)	326, 556, 718, 839, 851, 966
BseYI	CCCAGC	1 cut(s)	806
BshFI	GGCC	4 cut(s)	712, 811, 824, 956
BshNI	GGYRCC	1 cut(s)	626
BshVI	ATCGAT	1 cut(s)	199
BsiHKAI	GWGCWC	3 cut(s)	24, 706, 915
BsiHKCI	CYCGRG	1 cut(s)	505
BsiSI	CCGG	1 cut(s)	174
BslFI	GGGAC	1 cut(s)	656
BslI	CCNNNNNNNGG	5 cut(s)	679, 680, 697, 698, 886
BsmAI	GTCTC	1 cut(s)	502
BsmFI	GGGAC	1 cut(s)	656
BsnI	GGCC	4 cut(s)	712, 811, 824, 956
BsoBI	CYCGRG	1 cut(s)	505
Bsp120I	GGGCCC	1 cut(s)	710
Bsp1286I	GDGCHC	6 cut(s)	24, 566, 637, 706, 714, 915
Bsp143I	GATC	2 cut(s)	265, 926
Bsp1720I	GCTNAGC	1 cut(s)	11
Bsp19I	CCATGG	1 cut(s)	1006
BspACI	CCGC	1 cut(s)	825
BspANI	GGCC	4 cut(s)	712, 811, 824, 956
BspCNI	CTCAG	2 cut(s)	809, 901
BspDI	ATCGAT	1 cut(s)	199
BspLI	GGNNCC	3 cut(s)	628, 636, 712
BspPI	GGATC	1 cut(s)	273
BspQI	GCTCTTC	1 cut(s)	741
BspT107I	GGYRCC	1 cut(s)	626
BsrI	ACTGG	5 cut(s)	145, 545, 873, 968, 1100
BssECI	CCNNGG	5 cut(s)	183, 630, 857, 1006, 1040
BssMI	GATC	2 cut(s)	265, 926
BssT1I	CCWWGG	3 cut(s)	183, 857, 1006
Bst2UI	CCWGG	3 cut(s)	631, 1042, 1068
Bst4CI	ACNGT	4 cut(s)	71, 387, 608, 1078
Bst6I	CTCTTC	4 cut(s)	48, 741, 917, 1030
BstC8I	GCNNGC	2 cut(s)	233, 432
BstDEI	CTNAG	5 cut(s)	11, 408, 675, 796, 909
BstDSI	CCRYGG	1 cut(s)	1006
BstF5I	GGATG	5 cut(s)	55, 638, 761, 765, 790
BstH2I	RGCGCY	1 cut(s)	856
BstHHI	GCGC	1 cut(s)	855
BstKTI	GATC	2 cut(s)	268, 929
BstMAI	GTCTC	1 cut(s)	502
BstMBI	GATC	2 cut(s)	265, 926
BstMWI	GCNNNNNNNGC	3 cut(s)	550, 718, 836
BstNI	CCWGG	3 cut(s)	631, 1042, 1068
BstSCI	CCNGG	3 cut(s)	629, 1040, 1066
BstSLI	GKGCMC	1 cut(s)	714
BstV1I	GCAGC	6 cut(s)	326, 556, 718, 839, 851, 966
BstXI	CCANNNNNNTGG	1 cut(s)	611
Bsu15I	ATCGAT	1 cut(s)	199
BsuI	GTATCC	1 cut(s)	1002
BsuRI	GGCC	4 cut(s)	712, 811, 824, 956
BsuTUI	ATCGAT	1 cut(s)	199
BtgI	CCRYGG	1 cut(s)	1006
BtsCI	GGATG	5 cut(s)	55, 638, 761, 765, 790
BtsIMutI	CAGTG	2 cut(s)	76, 1107
Cac8I	GCNNGC	2 cut(s)	233, 432
CaiI	CAGNNNCTG	2 cut(s)	46, 803
CfoI	GCGC	1 cut(s)	855
Cfr13I	GGNCC	3 cut(s)	710, 711, 809
ClaI	ATCGAT	1 cut(s)	199
Csp6I	GTAC	4 cut(s)	118, 241, 627, 785
CspCI	CAANNNNNGTGG	2 cut(s)	261, 296
CviAII	CATG	5 cut(s)	112, 130, 1007, 1139, 1151
CviQI	GTAC	4 cut(s)	118, 241, 627, 785
DdeI	CTNAG	5 cut(s)	11, 408, 675, 796, 909
DpnI	GATC	2 cut(s)	267, 928
DpnII	GATC	2 cut(s)	265, 926
DraI	TTTAAA	1 cut(s)	537
DraIII	CACNNNGTG	1 cut(s)	1102
DriI	GACNNNNNGTC	1 cut(s)	1062
EaeI	YGGCCR	1 cut(s)	822
Eam1104I	CTCTTC	4 cut(s)	48, 741, 917, 1030
Eam1105I	GACNNNNNGTC	1 cut(s)	1062
EarI	CTCTTC	4 cut(s)	48, 741, 917, 1030
Ecl136II	GAGCTC	1 cut(s)	22
Eco130I	CCWWGG	3 cut(s)	183, 857, 1006
Eco24I	GRGCYC	4 cut(s)	24, 566, 637, 714
Eco53kI	GAGCTC	1 cut(s)	22
Eco57I	CTGAAG	3 cut(s)	23, 518, 941
Eco88I	CYCGRG	1 cut(s)	505
EcoICRI	GAGCTC	1 cut(s)	22
EcoO109I	RGGNCCY	1 cut(s)	711
EcoRII	CCWGG	3 cut(s)	629, 1040, 1066
EcoT14I	CCWWGG	3 cut(s)	183, 857, 1006
EcoT38I	GRGCYC	4 cut(s)	24, 566, 637, 714
ErhI	CCWWGG	3 cut(s)	183, 857, 1006
FaeI	CATG	5 cut(s)	115, 133, 1010, 1142, 1154
FalI	AAGNNNNNCTT	2 cut(s)	203, 235
FaqI	GGGAC	1 cut(s)	656
FatI	CATG	5 cut(s)	111, 129, 1006, 1138, 1150
FblI	GTMKAC	1 cut(s)	600
Fnu4HI	GCNGC	7 cut(s)	315, 545, 732, 825, 828, 840, 980
FokI	GGATG	5 cut(s)	62, 625, 768, 772, 777
FriOI	GRGCYC	4 cut(s)	24, 566, 637, 714
Fsp4HI	GCNGC	7 cut(s)	315, 545, 732, 825, 828, 840, 980
FspBI	CTAG	1 cut(s)	858
GlaI	GCGC	1 cut(s)	854
GluI	GCNGC	7 cut(s)	315, 545, 732, 825, 828, 840, 980
GsaI	CCCAGC	1 cut(s)	810
HaeII	RGCGCY	1 cut(s)	856
HaeIII	GGCC	4 cut(s)	712, 811, 824, 956
HapII	CCGG	1 cut(s)	174
HhaI	GCGC	1 cut(s)	855
Hin1II	CATG	5 cut(s)	115, 133, 1010, 1142, 1154
Hin6I	GCGC	1 cut(s)	853
HinP1I	GCGC	1 cut(s)	853
HincII	GTYRAC	2 cut(s)	190, 357
HindII	GTYRAC	2 cut(s)	190, 357
HindIII	AAGCTT	1 cut(s)	249
HinfI	GANTC	4 cut(s)	92, 226, 862, 905
HpaII	CCGG	1 cut(s)	174
HphI	GGTGA	4 cut(s)	145, 172, 413, 765
Hpy166II	GTNNAC	6 cut(s)	76, 190, 283, 357, 601, 614
Hpy188I	TCNGA	6 cut(s)	531, 910, 921, 1002, 1014, 1030
Hpy188III	TCNNGA	8 cut(s)	47, 223, 473, 507, 578, 930, 940, 1081
Hpy8I	GTNNAC	6 cut(s)	76, 190, 283, 357, 601, 614
HpyCH4III	ACNGT	4 cut(s)	71, 387, 608, 1078
HpyCH4IV	ACGT	2 cut(s)	915, 1063
HpyCH4V	TGCA	4 cut(s)	314, 416, 839, 1105
HpyF10VI	GCNNNNNNNGC	3 cut(s)	550, 718, 836
HpyF3I	CTNAG	5 cut(s)	11, 408, 675, 796, 909
HpySE526I	ACGT	2 cut(s)	915, 1063
Hsp92II	CATG	5 cut(s)	115, 133, 1010, 1142, 1154
HspAI	GCGC	1 cut(s)	853
KpnI	GGTACC	1 cut(s)	630
Kzo9I	GATC	2 cut(s)	265, 926
LguI	GCTCTTC	1 cut(s)	741
LmnI	GCTCC	2 cut(s)	640, 665
Lsp1109I	GCAGC	6 cut(s)	326, 556, 718, 839, 851, 966
LweI	GCATC	1 cut(s)	556
MaeI	CTAG	1 cut(s)	858
MaeII	ACGT	2 cut(s)	915, 1063
MaeIII	GTNAC	4 cut(s)	133, 473, 646, 875
MalI	GATC	2 cut(s)	267, 928
MboI	GATC	2 cut(s)	265, 926
MboII	GAAGA	7 cut(s)	65, 211, 223, 511, 728, 934, 1017
MhlI	GDGCHC	6 cut(s)	24, 566, 637, 706, 714, 915
MluCI	AATT	5 cut(s)	59, 342, 485, 1110, 1126
MlyI	GAGTC	2 cut(s)	101, 856
MmeI	TCCRAC	3 cut(s)	63, 764, 893
MroXI	GAANNNNTTC	1 cut(s)	215
MseI	TTAA	8 cut(s)	108, 294, 321, 449, 525, 536, 659, 848
MslI	CAYNNNNRTG	1 cut(s)	609
MspA1I	CMGCKG	3 cut(s)	352, 731, 902
MspI	CCGG	1 cut(s)	174
MspR9I	CCNGG	3 cut(s)	631, 1042, 1068
MssI	GTTTAAAC	1 cut(s)	537
MvaI	CCWGG	3 cut(s)	631, 1042, 1068
MwoI	GCNNNNNNNGC	3 cut(s)	550, 718, 836
NcoI	CCATGG	1 cut(s)	1006
NdeII	GATC	2 cut(s)	265, 926
NlaIII	CATG	5 cut(s)	115, 133, 1010, 1142, 1154
NlaIV	GGNNCC	3 cut(s)	628, 636, 712
NmuCI	GTSAC	3 cut(s)	133, 473, 646
OliI	CACNNNNGTG	1 cut(s)	609
PaeR7I	CTCGAG	1 cut(s)	505
PciSI	GCTCTTC	1 cut(s)	741
PdmI	GAANNNNTTC	1 cut(s)	215
PfeI	GAWTC	2 cut(s)	226, 905
PkrI	GCNGC	7 cut(s)	316, 546, 733, 826, 829, 841, 981
PleI	GAGTC	2 cut(s)	100, 856
PmeI	GTTTAAAC	1 cut(s)	537
PpsI	GAGTC	2 cut(s)	100, 856
PshBI	ATTAAT	1 cut(s)	525
Psp124BI	GAGCTC	1 cut(s)	24
Psp6I	CCWGG	3 cut(s)	629, 1040, 1066
PspFI	CCCAGC	1 cut(s)	806
PspGI	CCWGG	3 cut(s)	629, 1040, 1066
PspN4I	GGNNCC	3 cut(s)	628, 636, 712
PspOMI	GGGCCC	1 cut(s)	710
PspPI	GGNCC	3 cut(s)	710, 711, 809
PstNI	CAGNNNCTG	2 cut(s)	46, 803
PvuII	CAGCTG	3 cut(s)	352, 731, 902
RsaI	GTAC	4 cut(s)	119, 242, 628, 786
RsaNI	GTAC	4 cut(s)	118, 241, 627, 785
RseI	CAYNNNNRTG	1 cut(s)	609
SacI	GAGCTC	1 cut(s)	24
SapI	GCTCTTC	1 cut(s)	741
SaqAI	TTAA	8 cut(s)	108, 294, 321, 449, 525, 536, 659, 848
SatI	GCNGC	7 cut(s)	315, 545, 732, 825, 828, 840, 980
Sau3AI	GATC	2 cut(s)	265, 926
Sau96I	GGNCC	3 cut(s)	710, 711, 809
SchI	GAGTC	2 cut(s)	101, 856
ScrFI	CCNGG	3 cut(s)	631, 1042, 1068
SduI	GDGCHC	6 cut(s)	24, 566, 637, 706, 714, 915
SfaNI	GCATC	1 cut(s)	556
Sfr274I	CTCGAG	1 cut(s)	505
SlaI	CTCGAG	1 cut(s)	505
SmiMI	CAYNNNNRTG	1 cut(s)	609
SmlI	CTYRAG	1 cut(s)	505
SmoI	CTYRAG	1 cut(s)	505
Sse9I	AATT	5 cut(s)	59, 342, 485, 1110, 1126
SsiI	CCGC	1 cut(s)	825
SspMI	CTAG	1 cut(s)	858
SstI	GAGCTC	1 cut(s)	24
StyD4I	CCNGG	3 cut(s)	629, 1040, 1066
StyI	CCWWGG	3 cut(s)	183, 857, 1006
TaaI	ACNGT	4 cut(s)	71, 387, 608, 1078
TaiI	ACGT	2 cut(s)	918, 1066
TaqI	TCGA	4 cut(s)	199, 222, 268, 506
TasI	AATT	5 cut(s)	59, 342, 485, 1110, 1126
TauI	GCSGC	1 cut(s)	827
TfiI	GAWTC	2 cut(s)	226, 905
Tru1I	TTAA	8 cut(s)	108, 294, 321, 449, 525, 536, 659, 848
Tru9I	TTAA	8 cut(s)	108, 294, 321, 449, 525, 536, 659, 848
TscAI	CASTG	2 cut(s)	76, 1107
TseFI	GTSAC	3 cut(s)	133, 473, 646
TseI	GCWGC	6 cut(s)	314, 544, 731, 827, 839, 979
Tsp45I	GTSAC	3 cut(s)	133, 473, 646
TspDTI	ATGAA	3 cut(s)	66, 224, 396
TspRI	CASTG	2 cut(s)	76, 1107
VspI	ATTAAT	1 cut(s)	525
XapI	RAATTY	2 cut(s)	59, 1110
XhoI	CTCGAG	1 cut(s)	505
XmaJI	CCTAGG	1 cut(s)	857
XmiI	GTMKAC	1 cut(s)	600
XmnI	GAANNNNTTC	1 cut(s)	215
XspI	CTAG	1 cut(s)	858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.