Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0022557

Physical Location & Seq

Genomic Coordinates Reverse (-)

8961488 .. 8963021

Gene Structure 1534 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGAGAATTCTCATCAAGTTTCGGACCACCTGGAGCCGTGGCGCCACCTCCACGGTAAGGTCGTCATGGTCACCGGCGCTTCCTCTGGCCTCGGCCGCGACTTTTGCTTAGACTTGGCTAAAGCCGGATGCAGAATCGTAGCCGCCGCTCGCCGCATCGACCGCCTTCCGTCCGTCTGCGATCAAATCAACCAGCTCTCCATCACGGCTCCGTCTTTTTCTTCTTCTGCTGCTGCTGATAATATTCCTGGAGGAGGCCCGCGGGCCGTGGCTGTTGAGCTGGATGTCAGCGCCGATGGCCCAGCTATTGAGAAGTCTGTGAACAAGGCTTGGGACGCGTTTGGGCGCATCGATGCCCTTGTTAACAATGCCGGTATTAGAGGTTGGTTTGTGTCTGAGGAGGAATGGAATAATGTTTTCAGGACAAATTTAACGGGTTCCTGGTTGGTGTCAAAGTTTGTTGCTATACGCATATTTGCCTGGAGCTACAGCATACAATTGTTCAAAGGCTGGCGTAAACACCTTAAACAAGGTATTATCTCTAACATGCTCATAGGGAAAATCGTCTTAACCGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004312 GO:0004316 GO:0005488 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030497 GO:0032787 GO:0036094 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0048037 GO:0050661 GO:0050662 GO:0055114 GO:0071704 GO:0072330 GO:0097159 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

193

Amino Acids

20.96

Weight (kDa)

9.15

Isoelectric Point (pI)

27.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	20 - 67	9.3e-09	short chain dehydrogenase
adh_short	PF00106	77 - 154	1.8e-11	short chain dehydrogenase
adh_short_C2	PF13561	84 - 154	1.4e-07	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022557)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g08070
rosa_chinensis	RchiOBHm_Chr7g0229051
rosa_multiflora	Rmu_sc0000271.1_g000030
rosa_rugosa	Rorug07G0255300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	42
AccBSI	CCGCTC	1 cut(s)	149
AccII	CGCG	4 cut(s)	99, 262, 338, 575
AciI	CCGC	8 cut(s)	97, 144, 147, 154, 163, 260, 262, 573
AcoI	YGGCCR	1 cut(s)	94
AcsI	RAATTY	2 cut(s)	7, 427
AcyI	GRCGYC	1 cut(s)	43
AfiI	CCNNNNNNNGG	2 cut(s)	58, 254
AflIII	ACRYGT	1 cut(s)	336
AgsI	TTSAA	1 cut(s)	505
AjnI	CCWGG	4 cut(s)	30, 247, 440, 479
AluBI	AGCT	4 cut(s)	196, 280, 305, 486
AluI	AGCT	4 cut(s)	196, 280, 305, 486
AoxI	GGCC	5 cut(s)	88, 94, 256, 264, 298
ApeKI	GCWGC	2 cut(s)	230, 233
ApoI	RAATTY	2 cut(s)	7, 427
AspLEI	GCGC	4 cut(s)	45, 80, 293, 348
AspS9I	GGNCC	4 cut(s)	25, 257, 264, 299
AsuHPI	GGTGA	1 cut(s)	64
AvaII	GGWCC	1 cut(s)	25
BanI	GGYRCC	1 cut(s)	42
BbvI	GCAGC	2 cut(s)	217, 220
BccI	CCATC	2 cut(s)	209, 290
BceAI	ACGGC	3 cut(s)	22, 222, 251
BciT130I	CCWGG	4 cut(s)	32, 249, 442, 481
BfmI	CTRYAG	1 cut(s)	487
BfoI	RGCGCY	3 cut(s)	46, 81, 294
BisI	GCNGC	6 cut(s)	97, 144, 147, 154, 231, 234
BlsI	GCNGC	6 cut(s)	98, 145, 148, 155, 232, 235
Bme1390I	CCNGG	4 cut(s)	32, 249, 442, 481
Bme18I	GGWCC	1 cut(s)	25
BmgT120I	GGNCC	4 cut(s)	25, 257, 264, 299
BmiI	GGNNCC	4 cut(s)	36, 44, 210, 439
BmrFI	CCNGG	4 cut(s)	32, 249, 442, 481
BmsI	GCATC	4 cut(s)	119, 165, 343, 357
BpmI	CTGGAG	3 cut(s)	53, 270, 502
Bsa29I	ATCGAT	1 cut(s)	351
BsaHI	GRCGYC	1 cut(s)	43
BsaJI	CCNNGG	5 cut(s)	38, 52, 91, 260, 267
BsaXI	ACNNNNNCTCC	2 cut(s)	182, 212
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 254
Bse118I	RCCGGY	2 cut(s)	74, 371
BseBI	CCWGG	4 cut(s)	32, 249, 442, 481
BseCI	ATCGAT	1 cut(s)	351
BseDI	CCNNGG	5 cut(s)	38, 52, 91, 260, 267
BseGI	GGATG	2 cut(s)	134, 289
BseLI	CCNNNNNNNGG	2 cut(s)	58, 254
BseMII	CTCAG	1 cut(s)	387
BseRI	GAGGAG	2 cut(s)	267, 413
BseX3I	CGGCCG	1 cut(s)	94
BseXI	GCAGC	2 cut(s)	217, 220
BseYI	CCCAGC	1 cut(s)	301
Bsh1236I	CGCG	4 cut(s)	99, 262, 338, 575
Bsh1285I	CGRYCG	2 cut(s)	97, 163
BshFI	GGCC	5 cut(s)	90, 96, 258, 266, 300
BshNI	GGYRCC	1 cut(s)	42
BshVI	ATCGAT	1 cut(s)	351
BsiEI	CGRYCG	2 cut(s)	97, 163
BsiSI	CCGG	3 cut(s)	75, 126, 372
BslFI	GGGAC	1 cut(s)	347
BslI	CCNNNNNNNGG	2 cut(s)	58, 254
BsmFI	GGGAC	1 cut(s)	347
BsnI	GGCC	5 cut(s)	90, 96, 258, 266, 300
Bsp143I	GATC	1 cut(s)	181
BspACI	CCGC	8 cut(s)	97, 144, 147, 154, 163, 260, 262, 573
BspANI	GGCC	5 cut(s)	90, 96, 258, 266, 300
BspCNI	CTCAG	1 cut(s)	388
BspDI	ATCGAT	1 cut(s)	351
BspFNI	CGCG	4 cut(s)	99, 262, 338, 575
BspLI	GGNNCC	4 cut(s)	36, 44, 210, 439
BspT107I	GGYRCC	1 cut(s)	42
BsrBI	CCGCTC	1 cut(s)	149
BsrFI	RCCGGY	2 cut(s)	74, 371
BssAI	RCCGGY	2 cut(s)	74, 371
BssECI	CCNNGG	5 cut(s)	38, 52, 91, 260, 267
BssMI	GATC	1 cut(s)	181
BssNI	GRCGYC	1 cut(s)	43
Bst2UI	CCWGG	4 cut(s)	32, 249, 442, 481
Bst4CI	ACNGT	1 cut(s)	56
BstACI	GRCGYC	1 cut(s)	43
BstC8I	GCNNGC	4 cut(s)	151, 260, 264, 512
BstDEI	CTNAG	2 cut(s)	109, 396
BstDSI	CCRYGG	4 cut(s)	38, 52, 260, 267
BstEII	GGTNACC	1 cut(s)	70
BstENI	CCTNNNNNAGG	1 cut(s)	252
BstF5I	GGATG	2 cut(s)	134, 289
BstFNI	CGCG	4 cut(s)	99, 262, 338, 575
BstH2I	RGCGCY	3 cut(s)	46, 81, 294
BstHHI	GCGC	4 cut(s)	45, 80, 293, 348
BstKTI	GATC	1 cut(s)	184
BstMBI	GATC	1 cut(s)	181
BstMCI	CGRYCG	2 cut(s)	97, 163
BstMWI	GCNNNNNNNGC	5 cut(s)	96, 105, 162, 297, 335
BstNI	CCWGG	4 cut(s)	32, 249, 442, 481
BstNSI	RCATGY	1 cut(s)	550
BstPI	GGTNACC	1 cut(s)	70
BstSCI	CCNGG	4 cut(s)	30, 247, 440, 479
BstSFI	CTRYAG	1 cut(s)	487
BstUI	CGCG	4 cut(s)	99, 262, 338, 575
BstV1I	GCAGC	2 cut(s)	217, 220
BstZI	CGGCCG	1 cut(s)	94
Bsu15I	ATCGAT	1 cut(s)	351
BsuRI	GGCC	5 cut(s)	90, 96, 258, 266, 300
BsuTUI	ATCGAT	1 cut(s)	351
BtgI	CCRYGG	4 cut(s)	38, 52, 260, 267
BtsCI	GGATG	2 cut(s)	134, 289
Cac8I	GCNNGC	4 cut(s)	151, 260, 264, 512
CfoI	GCGC	4 cut(s)	45, 80, 293, 348
Cfr10I	RCCGGY	2 cut(s)	74, 371
Cfr13I	GGNCC	4 cut(s)	25, 257, 264, 299
Cfr42I	CCGCGG	1 cut(s)	263
ClaI	ATCGAT	1 cut(s)	351
CseI	GACGC	1 cut(s)	344
CviAII	CATG	2 cut(s)	67, 547
DdeI	CTNAG	2 cut(s)	109, 396
DinI	GGCGCC	1 cut(s)	44
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
EaeI	YGGCCR	1 cut(s)	94
EagI	CGGCCG	1 cut(s)	94
EclXI	CGGCCG	1 cut(s)	94
Eco47I	GGWCC	1 cut(s)	25
Eco52I	CGGCCG	1 cut(s)	94
Eco91I	GGTNACC	1 cut(s)	70
EcoNI	CCTNNNNNAGG	1 cut(s)	252
EcoO65I	GGTNACC	1 cut(s)	70
EcoRI	GAATTC	1 cut(s)	7
EcoRII	CCWGG	4 cut(s)	30, 247, 440, 479
EgeI	GGCGCC	1 cut(s)	44
EheI	GGCGCC	1 cut(s)	44
FaeI	CATG	2 cut(s)	70, 550
FaiI	YATR	6 cut(s)	68, 467, 473, 494, 548, 554
FaqI	GGGAC	1 cut(s)	347
FatI	CATG	2 cut(s)	66, 546
FauI	CCCGC	2 cut(s)	255, 267
Fnu4HI	GCNGC	6 cut(s)	97, 144, 147, 154, 231, 234
FokI	GGATG	2 cut(s)	141, 296
Fsp4HI	GCNGC	6 cut(s)	97, 144, 147, 154, 231, 234
GlaI	GCGC	4 cut(s)	44, 79, 292, 347
GluI	GCNGC	6 cut(s)	97, 144, 147, 154, 231, 234
GsaI	CCCAGC	1 cut(s)	305
GsuI	CTGGAG	3 cut(s)	53, 270, 502
HaeII	RGCGCY	3 cut(s)	46, 81, 294
HaeIII	GGCC	5 cut(s)	90, 96, 258, 266, 300
HapII	CCGG	3 cut(s)	75, 126, 372
HgaI	GACGC	1 cut(s)	344
HhaI	GCGC	4 cut(s)	45, 80, 293, 348
Hin1I	GRCGYC	1 cut(s)	43
Hin1II	CATG	2 cut(s)	70, 550
Hin6I	GCGC	4 cut(s)	43, 78, 291, 346
HinP1I	GCGC	4 cut(s)	43, 78, 291, 346
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HinfI	GANTC	1 cut(s)	135
HpaI	GTTAAC	1 cut(s)	364
HpaII	CCGG	3 cut(s)	75, 126, 372
HphI	GGTGA	1 cut(s)	64
Hpy166II	GTNNAC	3 cut(s)	322, 364, 518
Hpy188I	TCNGA	2 cut(s)	25, 397
Hpy188III	TCNNGA	1 cut(s)	421
Hpy8I	GTNNAC	3 cut(s)	322, 364, 518
HpyAV	CCTTC	1 cut(s)	176
HpyCH4III	ACNGT	1 cut(s)	56
HpyCH4V	TGCA	1 cut(s)	132
HpyF10VI	GCNNNNNNNGC	5 cut(s)	96, 105, 162, 297, 335
HpyF3I	CTNAG	2 cut(s)	109, 396
Hsp92I	GRCGYC	1 cut(s)	43
Hsp92II	CATG	2 cut(s)	70, 550
HspAI	GCGC	4 cut(s)	43, 78, 291, 346
KasI	GGCGCC	1 cut(s)	42
KspAI	GTTAAC	1 cut(s)	364
KspI	CCGCGG	1 cut(s)	263
Kzo9I	GATC	1 cut(s)	181
LmnI	GCTCC	3 cut(s)	34, 214, 483
Lsp1109I	GCAGC	2 cut(s)	217, 220
LweI	GCATC	4 cut(s)	119, 165, 343, 357
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	1 cut(s)	183
MbiI	CCGCTC	1 cut(s)	149
MboI	GATC	1 cut(s)	181
MboII	GAAGA	2 cut(s)	213, 216
MfeI	CAATTG	1 cut(s)	497
MluCI	AATT	3 cut(s)	7, 427, 497
MluI	ACGCGT	1 cut(s)	336
Mly113I	GGCGCC	1 cut(s)	43
MnlI	CCTC	8 cut(s)	59, 94, 101, 245, 248, 374, 391, 394
MseI	TTAA	4 cut(s)	363, 431, 525, 569
MspA1I	CMGCKG	1 cut(s)	262
MspI	CCGG	3 cut(s)	75, 126, 372
MspR9I	CCNGG	4 cut(s)	32, 249, 442, 481
MunI	CAATTG	1 cut(s)	497
MvaI	CCWGG	4 cut(s)	32, 249, 442, 481
MvnI	CGCG	4 cut(s)	99, 262, 338, 575
MwoI	GCNNNNNNNGC	5 cut(s)	96, 105, 162, 297, 335
NarI	GGCGCC	1 cut(s)	43
NdeII	GATC	1 cut(s)	181
NlaIII	CATG	2 cut(s)	70, 550
NlaIV	GGNNCC	4 cut(s)	36, 44, 210, 439
NmeAIII	GCCGAG	1 cut(s)	72
NmuCI	GTSAC	1 cut(s)	70
NspI	RCATGY	1 cut(s)	550
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PfeI	GAWTC	1 cut(s)	135
PfoI	TCCNGGA	1 cut(s)	247
PkrI	GCNGC	6 cut(s)	98, 145, 148, 155, 232, 235
PluTI	GGCGCC	1 cut(s)	46
Psp6I	CCWGG	4 cut(s)	30, 247, 440, 479
PspEI	GGTNACC	1 cut(s)	70
PspFI	CCCAGC	1 cut(s)	301
PspGI	CCWGG	4 cut(s)	30, 247, 440, 479
PspN4I	GGNNCC	4 cut(s)	36, 44, 210, 439
PspPI	GGNCC	4 cut(s)	25, 257, 264, 299
SacII	CCGCGG	1 cut(s)	263
SaqAI	TTAA	4 cut(s)	363, 431, 525, 569
SatI	GCNGC	6 cut(s)	97, 144, 147, 154, 231, 234
Sau3AI	GATC	1 cut(s)	181
Sau96I	GGNCC	4 cut(s)	25, 257, 264, 299
ScrFI	CCNGG	4 cut(s)	32, 249, 442, 481
SfaNI	GCATC	4 cut(s)	119, 165, 343, 357
SfcI	CTRYAG	1 cut(s)	487
SfoI	GGCGCC	1 cut(s)	44
Sfr303I	CCGCGG	1 cut(s)	263
SgrAI	CRCCGGYG	1 cut(s)	74
SgrBI	CCGCGG	1 cut(s)	263
SinI	GGWCC	1 cut(s)	25
Sse9I	AATT	3 cut(s)	7, 427, 497
SsiI	CCGC	8 cut(s)	97, 144, 147, 154, 163, 260, 262, 573
SspDI	GGCGCC	1 cut(s)	42
SspI	AATATT	1 cut(s)	244
StyD4I	CCNGG	4 cut(s)	30, 247, 440, 479
TaaI	ACNGT	1 cut(s)	56
TaqI	TCGA	2 cut(s)	159, 351
TasI	AATT	3 cut(s)	7, 427, 497
TauI	GCSGC	4 cut(s)	99, 146, 149, 156
TfiI	GAWTC	1 cut(s)	135
Tru1I	TTAA	4 cut(s)	363, 431, 525, 569
Tru9I	TTAA	4 cut(s)	363, 431, 525, 569
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	2 cut(s)	230, 233
Tsp45I	GTSAC	1 cut(s)	70
TspGWI	ACGGA	3 cut(s)	159, 163, 201
VpaK11BI	GGWCC	1 cut(s)	25
XagI	CCTNNNNNAGG	1 cut(s)	252
XapI	RAATTY	2 cut(s)	7, 427
XceI	RCATGY	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.