Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0022557

Physical Location & Seq

Genomic Coordinates Reverse (-)

23839403 .. 23839816

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0255300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGTCCTCTTTTTCTCTCCTCCGAGTTATTCTAGGGTTTCTTGCTGTGGTGACTCATGGCGGCTCTGCAATTTCGACCAGCATCGGCGGCCATCCCTTCCCTTCTGGTTGCATTGACGATGGCGACGTAGGAGCAATCCCTCACCTTCTCGTCTCGACTCTCGCAAGGGAGATCTCTCGACGGCGATCAACTTTAGTTGATGGTGGTCTTGTACCTTGGAATCGGAAGGGCGAGGGTGCTCTCCCTTCTACTCATCAGTGGATGGTGATGATGGTCGTTCTTGTGTCTTCGGGTCAAGATTCGAGGTGTGGAGCTGGGTTGTGGAGGGAGGCTCTTCCACTGGAGGCGGTGGTGCATCCCGACCGGGCTTTCTTCTCCATGATGTCGCTGTGGGGGGGGGGACCCGTTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004312 GO:0004316 GO:0005488 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030497 GO:0032787 GO:0036094 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0048037 GO:0050661 GO:0050662 GO:0055114 GO:0071704 GO:0072330 GO:0097159 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

137

Amino Acids

14.48

Weight (kDa)

6.96

Isoelectric Point (pI)

53.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022557)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g08070
rosa_chinensis	RchiOBHm_Chr7g0229051
rosa_multiflora	Rmu_sc0000271.1_g000030
rosa_rugosa	Rorug07G0255300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	60, 87, 347
AcoI	YGGCCR	1 cut(s)	88
AfaI	GTAC	1 cut(s)	213
AluBI	AGCT	1 cut(s)	314
AluI	AGCT	1 cut(s)	314
Alw21I	GWGCWC	1 cut(s)	241
Alw26I	GTCTC	1 cut(s)	157
AoxI	GGCC	1 cut(s)	88
AspS9I	GGNCC	1 cut(s)	401
AsuC2I	CCSGG	1 cut(s)	365
AsuHPI	GGTGA	3 cut(s)	61, 134, 277
AvaII	GGWCC	1 cut(s)	401
BbsI	GAAGAC	1 cut(s)	279
Bbv12I	GWGCWC	1 cut(s)	241
BccI	CCATC	5 cut(s)	99, 113, 194, 256, 265
BceAI	ACGGC	1 cut(s)	197
BcnI	CCSGG	1 cut(s)	365
BcoDI	GTCTC	1 cut(s)	157
BfaI	CTAG	1 cut(s)	32
BglII	AGATCT	1 cut(s)	171
BisI	GCNGC	2 cut(s)	61, 88
BlsI	GCNGC	2 cut(s)	62, 89
Bme1390I	CCNGG	1 cut(s)	365
Bme18I	GGWCC	1 cut(s)	401
BmgT120I	GGNCC	1 cut(s)	401
BmiI	GGNNCC	2 cut(s)	402, 403
BmrFI	CCNGG	1 cut(s)	365
BmsI	GCATC	2 cut(s)	90, 364
BpiI	GAAGAC	1 cut(s)	279
BplI	GAGNNNNNCTC	2 cut(s)	316, 348
BpmI	CTGGAG	1 cut(s)	362
BpuMI	CCSGG	1 cut(s)	365
BsaJI	CCNNGG	1 cut(s)	215
Bse1I	ACTGG	1 cut(s)	345
BseDI	CCNNGG	1 cut(s)	215
BseGI	GGATG	3 cut(s)	91, 267, 355
BseNI	ACTGG	1 cut(s)	345
BseRI	GAGGAG	1 cut(s)	8
BseYI	CCCAGC	1 cut(s)	314
Bsh1285I	CGRYCG	1 cut(s)	364
BshFI	GGCC	1 cut(s)	90
BsiEI	CGRYCG	1 cut(s)	364
BsiHKAI	GWGCWC	1 cut(s)	241
BsiSI	CCGG	1 cut(s)	364
BsmAI	GTCTC	1 cut(s)	157
BsmBI	CGTCTC	1 cut(s)	157
BsnI	GGCC	1 cut(s)	90
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp143I	GATC	2 cut(s)	171, 185
BspACI	CCGC	3 cut(s)	60, 87, 347
BspANI	GGCC	1 cut(s)	90
BspLI	GGNNCC	2 cut(s)	402, 403
BspQI	GCTCTTC	1 cut(s)	339
BsrI	ACTGG	1 cut(s)	345
BssECI	CCNNGG	1 cut(s)	215
BssMI	GATC	2 cut(s)	171, 185
BssT1I	CCWWGG	1 cut(s)	215
Bst6I	CTCTTC	1 cut(s)	339
BstF5I	GGATG	3 cut(s)	91, 267, 355
BstKTI	GATC	2 cut(s)	174, 188
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	2 cut(s)	171, 185
BstMCI	CGRYCG	1 cut(s)	364
BstMWI	GCNNNNNNNGC	1 cut(s)	87
BstSCI	CCNGG	1 cut(s)	363
BstV2I	GAAGAC	1 cut(s)	279
BstX2I	RGATCY	1 cut(s)	171
BstYI	RGATCY	1 cut(s)	171
BsuRI	GGCC	1 cut(s)	90
BtsCI	GGATG	3 cut(s)	91, 267, 355
BtsIMutI	CAGTG	2 cut(s)	263, 338
Cfr13I	GGNCC	1 cut(s)	401
Csp6I	GTAC	1 cut(s)	212
CviAII	CATG	2 cut(s)	56, 379
CviJI	RGCY	5 cut(s)	63, 90, 314, 332, 368
CviKI_1	RGCY	5 cut(s)	63, 90, 314, 332, 368
CviQI	GTAC	1 cut(s)	212
DpnI	GATC	2 cut(s)	173, 187
DpnII	GATC	2 cut(s)	171, 185
EaeI	YGGCCR	1 cut(s)	88
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
Eco130I	CCWWGG	1 cut(s)	215
Eco47I	GGWCC	1 cut(s)	401
EcoO109I	RGGNCCY	1 cut(s)	401
EcoT14I	CCWWGG	1 cut(s)	215
ErhI	CCWWGG	1 cut(s)	215
Esp3I	CGTCTC	1 cut(s)	157
FaeI	CATG	2 cut(s)	59, 382
FaiI	YATR	2 cut(s)	57, 380
FatI	CATG	2 cut(s)	55, 378
Fnu4HI	GCNGC	2 cut(s)	61, 88
FokI	GGATG	3 cut(s)	78, 274, 342
Fsp4HI	GCNGC	2 cut(s)	61, 88
FspBI	CTAG	1 cut(s)	32
GluI	GCNGC	2 cut(s)	61, 88
GsaI	CCCAGC	1 cut(s)	318
GsuI	CTGGAG	1 cut(s)	362
HaeIII	GGCC	1 cut(s)	90
HapII	CCGG	1 cut(s)	364
Hin1II	CATG	2 cut(s)	59, 382
HinfI	GANTC	4 cut(s)	52, 157, 220, 299
HpaII	CCGG	1 cut(s)	364
HphI	GGTGA	3 cut(s)	61, 134, 277
Hpy188I	TCNGA	2 cut(s)	23, 225
Hpy188III	TCNNGA	5 cut(s)	154, 177, 296, 359, 411
Hpy99I	CGWCG	2 cut(s)	128, 183
HpyAV	CCTTC	5 cut(s)	106, 111, 155, 220, 255
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	3 cut(s)	68, 111, 355
HpyF10VI	GCNNNNNNNGC	1 cut(s)	87
HpySE526I	ACGT	1 cut(s)	126
Hsp92II	CATG	2 cut(s)	59, 382
KflI	GGGWCCC	1 cut(s)	401
Kzo9I	GATC	2 cut(s)	171, 185
LguI	GCTCTTC	1 cut(s)	339
LmnI	GCTCC	2 cut(s)	131, 311
LpnPI	CCDG	5 cut(s)	90, 91, 300, 326, 377
LweI	GCATC	2 cut(s)	90, 364
MaeI	CTAG	1 cut(s)	32
MaeII	ACGT	1 cut(s)	126
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	2 cut(s)	173, 187
MboI	GATC	2 cut(s)	171, 185
MboII	GAAGA	3 cut(s)	279, 326, 364
MflI	RGATCY	1 cut(s)	171
MhlI	GDGCHC	1 cut(s)	241
MluCI	AATT	1 cut(s)	69
MlyI	GAGTC	2 cut(s)	46, 151
MnlI	CCTC	8 cut(s)	16, 29, 150, 226, 297, 318, 322, 337
MspI	CCGG	1 cut(s)	364
MspR9I	CCNGG	1 cut(s)	365
MwoI	GCNNNNNNNGC	1 cut(s)	87
NciI	CCSGG	1 cut(s)	365
NdeII	GATC	2 cut(s)	171, 185
NlaIII	CATG	2 cut(s)	59, 382
NlaIV	GGNNCC	2 cut(s)	402, 403
NmuCI	GTSAC	1 cut(s)	49
PciSI	GCTCTTC	1 cut(s)	339
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PfeI	GAWTC	2 cut(s)	220, 299
PkrI	GCNGC	2 cut(s)	62, 89
PleI	GAGTC	2 cut(s)	46, 151
PpsI	GAGTC	2 cut(s)	46, 151
PpuMI	RGGWCCY	1 cut(s)	401
Psp5II	RGGWCCY	1 cut(s)	401
PspFI	CCCAGC	1 cut(s)	314
PspN4I	GGNNCC	2 cut(s)	402, 403
PspPI	GGNCC	1 cut(s)	401
PspPPI	RGGWCCY	1 cut(s)	401
PsuI	RGATCY	1 cut(s)	171
RsaI	GTAC	1 cut(s)	213
RsaNI	GTAC	1 cut(s)	212
SapI	GCTCTTC	1 cut(s)	339
SatI	GCNGC	2 cut(s)	61, 88
Sau3AI	GATC	2 cut(s)	171, 185
Sau96I	GGNCC	1 cut(s)	401
SchI	GAGTC	2 cut(s)	46, 151
ScrFI	CCNGG	1 cut(s)	365
SduI	GDGCHC	1 cut(s)	241
SetI	ASST	5 cut(s)	129, 147, 217, 308, 316
SfaNI	GCATC	2 cut(s)	90, 364
SinI	GGWCC	1 cut(s)	401
Sse9I	AATT	1 cut(s)	69
SsiI	CCGC	3 cut(s)	60, 87, 347
SspMI	CTAG	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	363
StyI	CCWWGG	1 cut(s)	215
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	4 cut(s)	74, 155, 178, 302
TasI	AATT	1 cut(s)	69
TauI	GCSGC	2 cut(s)	63, 90
TfiI	GAWTC	2 cut(s)	220, 299
TscAI	CASTG	2 cut(s)	263, 345
TseFI	GTSAC	1 cut(s)	49
Tsp45I	GTSAC	1 cut(s)	49
TspRI	CASTG	2 cut(s)	263, 345
VpaK11BI	GGWCC	1 cut(s)	401
XspI	CTAG	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.