Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000271.1

Orthogroup ID

OG0022557

Physical Location & Seq

Genomic Coordinates Reverse (-)

154290 .. 154649

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000271.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atggcgaagcaagtctctgatcacctggagccatggcgcgacctacccgacaaggtcgtcatggtcacaggcgcctcttccggcctcggccgtgacttctgtttggatttggccaaagccggctgccggattgtcgcctctgctcgccgcgtcgaccgcctccagtctgtctgtgatgaaatcaaccatctctccaccgcgccgccgcaaccgagggccgtcgcggtcgagctcgacgtcagcgccgacggctctgctattcagaagtcagtgcaaaaggcttgggatgccttcggccgcatcgatgccctcatcaacaatgccggtgttagaggttgcttgcctttcatctctatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004312 GO:0004316 GO:0005488 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030497 GO:0032787 GO:0036094 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0048037 GO:0050661 GO:0050662 GO:0055114 GO:0071704 GO:0072330 GO:0097159 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

119

Amino Acids

12.76

Weight (kDa)

6.7

Isoelectric Point (pI)

34.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022557)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g08070
rosa_chinensis	RchiOBHm_Chr7g0229051
rosa_multiflora	Rmu_sc0000271.1_g000030
rosa_rugosa	Rorug07G0255300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	56
AatII	GACGTC	1 cut(s)	240
AccB1I	GGYRCC	1 cut(s)	71
AccI	GTMKAC	1 cut(s)	153
AccII	CGCG	4 cut(s)	39, 150, 200, 224
AciI	CCGC	7 cut(s)	148, 157, 198, 203, 206, 224, 298
AcoI	YGGCCR	3 cut(s)	88, 111, 295
AcyI	GRCGYC	2 cut(s)	72, 237
AfiI	CCNNNNNNNGG	1 cut(s)	126
AjnI	CCWGG	1 cut(s)	24
AluBI	AGCT	1 cut(s)	232
AluI	AGCT	1 cut(s)	232
Alw21I	GWGCWC	1 cut(s)	234
Alw26I	GTCTC	1 cut(s)	19
AoxI	GGCC	5 cut(s)	82, 88, 111, 216, 295
ApeKI	GCWGC	1 cut(s)	123
AspLEI	GCGC	4 cut(s)	39, 74, 202, 245
AspS9I	GGNCC	1 cut(s)	216
AsuHPI	GGTGA	1 cut(s)	14
BalI	TGGCCA	1 cut(s)	113
BanI	GGYRCC	1 cut(s)	71
BanII	GRGCYC	1 cut(s)	234
Bbv12I	GWGCWC	1 cut(s)	234
BbvI	GCAGC	1 cut(s)	110
BccI	CCATC	1 cut(s)	195
BceAI	ACGGC	3 cut(s)	75, 203, 265
BcgI	CGANNNNNNTGC	2 cut(s)	236, 270
BciT130I	CCWGG	1 cut(s)	26
BclI	TGATCA	1 cut(s)	19
BcoDI	GTCTC	1 cut(s)	19
BfaI	CTAG	1 cut(s)	358
BfoI	RGCGCY	2 cut(s)	75, 246
BisI	GCNGC	5 cut(s)	124, 148, 203, 206, 298
BlsI	GCNGC	5 cut(s)	125, 149, 204, 207, 299
Bme1390I	CCNGG	1 cut(s)	26
BmgT120I	GGNCC	1 cut(s)	216
BmiI	GGNNCC	2 cut(s)	30, 73
BmrFI	CCNGG	1 cut(s)	26
BmsI	GCATC	3 cut(s)	277, 295, 309
BpmI	CTGGAG	2 cut(s)	47, 146
Bsa29I	ATCGAT	1 cut(s)	303
BsaHI	GRCGYC	2 cut(s)	72, 237
BsaJI	CCNNGG	3 cut(s)	32, 85, 212
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bsc4I	CCNNNNNNNGG	1 cut(s)	126
Bse118I	RCCGGY	2 cut(s)	119, 323
Bse1I	ACTGG	1 cut(s)	163
BseBI	CCWGG	1 cut(s)	26
BseCI	ATCGAT	1 cut(s)	303
BseDI	CCNNGG	3 cut(s)	32, 85, 212
BseGI	GGATG	1 cut(s)	292
BseLI	CCNNNNNNNGG	1 cut(s)	126
BseNI	ACTGG	1 cut(s)	163
BseX3I	CGGCCG	2 cut(s)	88, 295
BseXI	GCAGC	1 cut(s)	110
Bsh1236I	CGCG	4 cut(s)	39, 150, 200, 224
Bsh1285I	CGRYCG	4 cut(s)	91, 157, 228, 298
BshFI	GGCC	5 cut(s)	84, 90, 113, 218, 297
BshNI	GGYRCC	1 cut(s)	71
BshVI	ATCGAT	1 cut(s)	303
BsiEI	CGRYCG	4 cut(s)	91, 157, 228, 298
BsiHKAI	GWGCWC	1 cut(s)	234
BsiSI	CCGG	4 cut(s)	81, 120, 127, 324
BslI	CCNNNNNNNGG	1 cut(s)	126
BsmAI	GTCTC	1 cut(s)	19
BsnI	GGCC	5 cut(s)	84, 90, 113, 218, 297
Bsp1286I	GDGCHC	1 cut(s)	234
Bsp143I	GATC	1 cut(s)	19
Bsp19I	CCATGG	1 cut(s)	32
BspACI	CCGC	7 cut(s)	148, 157, 198, 203, 206, 224, 298
BspANI	GGCC	5 cut(s)	84, 90, 113, 218, 297
BspDI	ATCGAT	1 cut(s)	303
BspFNI	CGCG	4 cut(s)	39, 150, 200, 224
BspLI	GGNNCC	2 cut(s)	30, 73
BspT107I	GGYRCC	1 cut(s)	71
BsrFI	RCCGGY	2 cut(s)	119, 323
BsrI	ACTGG	1 cut(s)	163
BssAI	RCCGGY	2 cut(s)	119, 323
BssECI	CCNNGG	3 cut(s)	32, 85, 212
BssMI	GATC	1 cut(s)	19
BssNI	GRCGYC	2 cut(s)	72, 237
BssT1I	CCWWGG	1 cut(s)	32
Bst2UI	CCWGG	1 cut(s)	26
Bst6I	CTCTTC	1 cut(s)	82
BstACI	GRCGYC	2 cut(s)	72, 237
BstC8I	GCNNGC	3 cut(s)	121, 145, 341
BstDSI	CCRYGG	1 cut(s)	32
BstF5I	GGATG	1 cut(s)	292
BstFNI	CGCG	4 cut(s)	39, 150, 200, 224
BstH2I	RGCGCY	2 cut(s)	75, 246
BstHHI	GCGC	4 cut(s)	39, 74, 202, 245
BstKTI	GATC	1 cut(s)	22
BstMAI	GTCTC	1 cut(s)	19
BstMBI	GATC	1 cut(s)	19
BstMCI	CGRYCG	4 cut(s)	91, 157, 228, 298
BstMWI	GCNNNNNNNGC	3 cut(s)	156, 249, 287
BstNI	CCWGG	1 cut(s)	26
BstSCI	CCNGG	1 cut(s)	24
BstUI	CGCG	4 cut(s)	39, 150, 200, 224
BstV1I	GCAGC	1 cut(s)	110
BstZI	CGGCCG	2 cut(s)	88, 295
Bsu15I	ATCGAT	1 cut(s)	303
BsuRI	GGCC	5 cut(s)	84, 90, 113, 218, 297
BsuTUI	ATCGAT	1 cut(s)	303
BtgI	CCRYGG	1 cut(s)	32
BtsCI	GGATG	1 cut(s)	292
BtsIMutI	CAGTG	1 cut(s)	276
Cac8I	GCNNGC	3 cut(s)	121, 145, 341
CfoI	GCGC	4 cut(s)	39, 74, 202, 245
Cfr10I	RCCGGY	2 cut(s)	119, 323
Cfr13I	GGNCC	1 cut(s)	216
ClaI	ATCGAT	1 cut(s)	303
CseI	GACGC	1 cut(s)	139
CviAII	CATG	2 cut(s)	33, 61
DinI	GGCGCC	1 cut(s)	73
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
DrdI	GACNNNNNNGTC	1 cut(s)	56
DseDI	GACNNNNNNGTC	1 cut(s)	56
EaeI	YGGCCR	3 cut(s)	88, 111, 295
EagI	CGGCCG	2 cut(s)	88, 295
Eam1104I	CTCTTC	1 cut(s)	82
EarI	CTCTTC	1 cut(s)	82
Ecl136II	GAGCTC	1 cut(s)	232
EclXI	CGGCCG	2 cut(s)	88, 295
Eco130I	CCWWGG	1 cut(s)	32
Eco24I	GRGCYC	1 cut(s)	234
Eco52I	CGGCCG	2 cut(s)	88, 295
Eco53kI	GAGCTC	1 cut(s)	232
EcoICRI	GAGCTC	1 cut(s)	232
EcoRII	CCWGG	1 cut(s)	24
EcoT14I	CCWWGG	1 cut(s)	32
EcoT38I	GRGCYC	1 cut(s)	234
EgeI	GGCGCC	1 cut(s)	73
EheI	GGCGCC	1 cut(s)	73
ErhI	CCWWGG	1 cut(s)	32
FaeI	CATG	2 cut(s)	36, 64
FaiI	YATR	2 cut(s)	34, 62
FatI	CATG	2 cut(s)	32, 60
FbaI	TGATCA	1 cut(s)	19
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	5 cut(s)	124, 148, 203, 206, 298
FokI	GGATG	1 cut(s)	299
FriOI	GRGCYC	1 cut(s)	234
Fsp4HI	GCNGC	5 cut(s)	124, 148, 203, 206, 298
FspBI	CTAG	1 cut(s)	358
GlaI	GCGC	4 cut(s)	38, 73, 201, 244
GluI	GCNGC	5 cut(s)	124, 148, 203, 206, 298
GsuI	CTGGAG	2 cut(s)	47, 146
HaeII	RGCGCY	2 cut(s)	75, 246
HaeIII	GGCC	5 cut(s)	84, 90, 113, 218, 297
HapII	CCGG	4 cut(s)	81, 120, 127, 324
HgaI	GACGC	1 cut(s)	139
HhaI	GCGC	4 cut(s)	39, 74, 202, 245
Hin1I	GRCGYC	2 cut(s)	72, 237
Hin1II	CATG	2 cut(s)	36, 64
Hin6I	GCGC	4 cut(s)	37, 72, 200, 243
HinP1I	GCGC	4 cut(s)	37, 72, 200, 243
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HpaII	CCGG	4 cut(s)	81, 120, 127, 324
HphI	GGTGA	1 cut(s)	14
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	2 cut(s)	19, 264
Hpy8I	GTNNAC	1 cut(s)	154
Hpy99I	CGWCG	4 cut(s)	155, 224, 239, 251
HpyAV	CCTTC	1 cut(s)	301
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	1 cut(s)	274
HpyF10VI	GCNNNNNNNGC	3 cut(s)	156, 249, 287
HpySE526I	ACGT	1 cut(s)	237
Hsp92I	GRCGYC	2 cut(s)	72, 237
Hsp92II	CATG	2 cut(s)	36, 64
HspAI	GCGC	4 cut(s)	37, 72, 200, 243
KasI	GGCGCC	1 cut(s)	71
KroI	GCCGGC	1 cut(s)	119
KroNI	GCCGGC	1 cut(s)	121
Ksp22I	TGATCA	1 cut(s)	19
Kzo9I	GATC	1 cut(s)	19
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	8 cut(s)	11, 38, 54, 94, 133, 140, 176, 337
Lsp1109I	GCAGC	1 cut(s)	110
LweI	GCATC	3 cut(s)	277, 295, 309
MaeI	CTAG	1 cut(s)	358
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	2 cut(s)	64, 92
MalI	GATC	1 cut(s)	21
MboI	GATC	1 cut(s)	19
MboII	GAAGA	1 cut(s)	69
MhlI	GDGCHC	1 cut(s)	234
MlsI	TGGCCA	1 cut(s)	113
MluNI	TGGCCA	1 cut(s)	113
Mly113I	GGCGCC	1 cut(s)	72
MnlI	CCTC	7 cut(s)	85, 95, 148, 170, 207, 320, 326
Mox20I	TGGCCA	1 cut(s)	113
MroNI	GCCGGC	1 cut(s)	119
MscI	TGGCCA	1 cut(s)	113
Msp20I	TGGCCA	1 cut(s)	113
MspI	CCGG	4 cut(s)	81, 120, 127, 324
MspR9I	CCNGG	1 cut(s)	26
MvaI	CCWGG	1 cut(s)	26
MvnI	CGCG	4 cut(s)	39, 150, 200, 224
MwoI	GCNNNNNNNGC	3 cut(s)	156, 249, 287
NaeI	GCCGGC	1 cut(s)	121
NarI	GGCGCC	1 cut(s)	72
NcoI	CCATGG	1 cut(s)	32
NdeII	GATC	1 cut(s)	19
NgoMIV	GCCGGC	1 cut(s)	119
NlaIII	CATG	2 cut(s)	36, 64
NlaIV	GGNNCC	2 cut(s)	30, 73
NmeAIII	GCCGAG	1 cut(s)	66
NmuCI	GTSAC	2 cut(s)	64, 92
PcsI	WCGNNNNNNNCGW	3 cut(s)	234, 243, 300
PdiI	GCCGGC	1 cut(s)	121
PflFI	GACNNNGTC	1 cut(s)	53
PkrI	GCNGC	5 cut(s)	125, 149, 204, 207, 299
PluTI	GGCGCC	1 cut(s)	75
Psp124BI	GAGCTC	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	24
PspN4I	GGNNCC	2 cut(s)	30, 73
PspPI	GGNCC	1 cut(s)	216
PsyI	GACNNNGTC	1 cut(s)	53
SacI	GAGCTC	1 cut(s)	234
SalI	GTCGAC	1 cut(s)	152
SatI	GCNGC	5 cut(s)	124, 148, 203, 206, 298
Sau3AI	GATC	1 cut(s)	19
Sau96I	GGNCC	1 cut(s)	216
ScrFI	CCNGG	1 cut(s)	26
SduI	GDGCHC	1 cut(s)	234
SetI	ASST	6 cut(s)	27, 45, 57, 234, 240, 337
SfaNI	GCATC	3 cut(s)	277, 295, 309
SfoI	GGCGCC	1 cut(s)	73
SsiI	CCGC	7 cut(s)	148, 157, 198, 203, 206, 224, 298
SspDI	GGCGCC	1 cut(s)	71
SspMI	CTAG	1 cut(s)	358
SstI	GAGCTC	1 cut(s)	234
StyD4I	CCNGG	1 cut(s)	24
StyI	CCWWGG	1 cut(s)	32
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	4 cut(s)	153, 228, 234, 303
TauI	GCSGC	4 cut(s)	150, 205, 208, 300
TscAI	CASTG	1 cut(s)	276
TseFI	GTSAC	2 cut(s)	64, 92
TseI	GCWGC	1 cut(s)	123
Tsp45I	GTSAC	2 cut(s)	64, 92
TspDTI	ATGAA	2 cut(s)	192, 337
TspRI	CASTG	1 cut(s)	276
Tth111I	GACNNNGTC	1 cut(s)	53
XmiI	GTMKAC	1 cut(s)	153
XspI	CTAG	1 cut(s)	358
ZraI	GACGTC	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.