Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0022557

Physical Location & Seq

Genomic Coordinates Forward (+)

52399155 .. 52399842

Gene Structure 688 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20518

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGCGAAGCAAGTCTCTGATCACCTGGAGCCATGGCGCGACCTACCCGACAAGGTCGTCATGGTCACCTGCGCCTCTTCAGGCCTCGGCCGTGACTTCTGTTTGGATTTGGCCAAAGCCGGCTGCCGGATTGTCGCCTCTGCTCTCCACGTCGACCGCCTCCAGTCTGTCTGTGATGAAATCAACCATCTCTCCACCGCGCCGCCGCAGCCGAGGGCCGTCACGGTCGAGCTCGACGTCAGCGCCGACGGCTCTGCTATTCAGAAGTCTGTGCAAAAGGCTTGGGATGCCTTCGGCCGCATCGATGCCCTCATCAACAATGCCGGTGTTAGAGGACCAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004312 GO:0004316 GO:0005488 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030497 GO:0032787 GO:0036094 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0048037 GO:0050661 GO:0050662 GO:0055114 GO:0071704 GO:0072330 GO:0097159 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

114

Amino Acids

12.25

Weight (kDa)

6.25

Isoelectric Point (pI)

25.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	18 - 111	9.1e-19	short chain dehydrogenase
adh_short_C2	PF13561	26 - 111	6.6e-08	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022557)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g08070
rosa_chinensis	RchiOBHm_Chr7g0229051
rosa_multiflora	Rmu_sc0000271.1_g000030
rosa_rugosa	Rorug07G0255300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	77
AasI	GACNNNNNNGTC	1 cut(s)	56
AatII	GACGTC	1 cut(s)	240
Acc36I	ACCTGC	1 cut(s)	77
AccI	GTMKAC	1 cut(s)	153
AccII	CGCG	2 cut(s)	39, 200
AciI	CCGC	5 cut(s)	157, 198, 203, 206, 298
AcoI	YGGCCR	3 cut(s)	88, 111, 295
AcuI	CTGAAG	1 cut(s)	63
AcyI	GRCGYC	1 cut(s)	237
AfiI	CCNNNNNNNGG	1 cut(s)	126
AjiI	CACGTC	1 cut(s)	151
AjnI	CCWGG	1 cut(s)	24
AluBI	AGCT	1 cut(s)	232
AluI	AGCT	1 cut(s)	232
Alw21I	GWGCWC	1 cut(s)	234
Alw26I	GTCTC	1 cut(s)	19
AoxI	GGCC	5 cut(s)	82, 88, 111, 216, 295
ApeKI	GCWGC	2 cut(s)	123, 208
AspLEI	GCGC	4 cut(s)	39, 74, 202, 245
AspS9I	GGNCC	2 cut(s)	216, 335
AsuHPI	GGTGA	2 cut(s)	14, 58
AvaII	GGWCC	1 cut(s)	335
BalI	TGGCCA	1 cut(s)	113
BanII	GRGCYC	1 cut(s)	234
Bbv12I	GWGCWC	1 cut(s)	234
BbvI	GCAGC	2 cut(s)	110, 220
BccI	CCATC	1 cut(s)	195
BceAI	ACGGC	3 cut(s)	75, 203, 265
BcgI	CGANNNNNNTGC	2 cut(s)	236, 270
BciT130I	CCWGG	1 cut(s)	26
BclI	TGATCA	1 cut(s)	19
BcoDI	GTCTC	1 cut(s)	19
BfoI	RGCGCY	1 cut(s)	246
BfuAI	ACCTGC	1 cut(s)	77
BisI	GCNGC	5 cut(s)	124, 203, 206, 209, 298
BlsI	GCNGC	5 cut(s)	125, 204, 207, 210, 299
Bme1390I	CCNGG	1 cut(s)	26
Bme18I	GGWCC	1 cut(s)	335
BmgBI	CACGTC	1 cut(s)	151
BmgT120I	GGNCC	2 cut(s)	216, 335
BmiI	GGNNCC	1 cut(s)	30
BmrFI	CCNGG	1 cut(s)	26
BmsI	GCATC	3 cut(s)	277, 295, 309
BpmI	CTGGAG	2 cut(s)	47, 146
Bsa29I	ATCGAT	1 cut(s)	303
BsaHI	GRCGYC	1 cut(s)	237
BsaJI	CCNNGG	4 cut(s)	32, 85, 212, 338
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bsc4I	CCNNNNNNNGG	1 cut(s)	126
Bse118I	RCCGGY	2 cut(s)	119, 323
Bse1I	ACTGG	1 cut(s)	163
BseBI	CCWGG	1 cut(s)	26
BseCI	ATCGAT	1 cut(s)	303
BseDI	CCNNGG	4 cut(s)	32, 85, 212, 338
BseGI	GGATG	1 cut(s)	292
BseLI	CCNNNNNNNGG	1 cut(s)	126
BseNI	ACTGG	1 cut(s)	163
BseX3I	CGGCCG	2 cut(s)	88, 295
BseXI	GCAGC	2 cut(s)	110, 220
Bsh1236I	CGCG	2 cut(s)	39, 200
Bsh1285I	CGRYCG	4 cut(s)	91, 157, 228, 298
BshFI	GGCC	5 cut(s)	84, 90, 113, 218, 297
BshVI	ATCGAT	1 cut(s)	303
BsiEI	CGRYCG	4 cut(s)	91, 157, 228, 298
BsiHKAI	GWGCWC	1 cut(s)	234
BsiSI	CCGG	3 cut(s)	120, 127, 324
BslI	CCNNNNNNNGG	1 cut(s)	126
BsmAI	GTCTC	1 cut(s)	19
BsnI	GGCC	5 cut(s)	84, 90, 113, 218, 297
Bsp1286I	GDGCHC	1 cut(s)	234
Bsp143I	GATC	1 cut(s)	19
Bsp19I	CCATGG	1 cut(s)	32
BspACI	CCGC	5 cut(s)	157, 198, 203, 206, 298
BspANI	GGCC	5 cut(s)	84, 90, 113, 218, 297
BspDI	ATCGAT	1 cut(s)	303
BspFNI	CGCG	2 cut(s)	39, 200
BspLI	GGNNCC	1 cut(s)	30
BspMI	ACCTGC	1 cut(s)	77
BsrFI	RCCGGY	2 cut(s)	119, 323
BsrI	ACTGG	1 cut(s)	163
BssAI	RCCGGY	2 cut(s)	119, 323
BssECI	CCNNGG	4 cut(s)	32, 85, 212, 338
BssMI	GATC	1 cut(s)	19
BssNI	GRCGYC	1 cut(s)	237
BssT1I	CCWWGG	2 cut(s)	32, 338
Bst2UI	CCWGG	1 cut(s)	26
Bst4CI	ACNGT	1 cut(s)	226
Bst6I	CTCTTC	1 cut(s)	82
BstACI	GRCGYC	1 cut(s)	237
BstC8I	GCNNGC	1 cut(s)	121
BstDSI	CCRYGG	1 cut(s)	32
BstEII	GGTNACC	1 cut(s)	64
BstF5I	GGATG	1 cut(s)	292
BstFNI	CGCG	2 cut(s)	39, 200
BstH2I	RGCGCY	1 cut(s)	246
BstHHI	GCGC	4 cut(s)	39, 74, 202, 245
BstKTI	GATC	1 cut(s)	22
BstMAI	GTCTC	1 cut(s)	19
BstMBI	GATC	1 cut(s)	19
BstMCI	CGRYCG	4 cut(s)	91, 157, 228, 298
BstMWI	GCNNNNNNNGC	3 cut(s)	208, 249, 287
BstNI	CCWGG	1 cut(s)	26
BstPI	GGTNACC	1 cut(s)	64
BstSCI	CCNGG	1 cut(s)	24
BstUI	CGCG	2 cut(s)	39, 200
BstV1I	GCAGC	2 cut(s)	110, 220
BstZI	CGGCCG	2 cut(s)	88, 295
Bsu15I	ATCGAT	1 cut(s)	303
BsuRI	GGCC	5 cut(s)	84, 90, 113, 218, 297
BsuTUI	ATCGAT	1 cut(s)	303
BtgI	CCRYGG	1 cut(s)	32
BtrI	CACGTC	1 cut(s)	151
BtsCI	GGATG	1 cut(s)	292
BveI	ACCTGC	1 cut(s)	77
Cac8I	GCNNGC	1 cut(s)	121
CfoI	GCGC	4 cut(s)	39, 74, 202, 245
Cfr10I	RCCGGY	2 cut(s)	119, 323
Cfr13I	GGNCC	2 cut(s)	216, 335
ClaI	ATCGAT	1 cut(s)	303
CviAII	CATG	2 cut(s)	33, 61
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
DrdI	GACNNNNNNGTC	1 cut(s)	56
DseDI	GACNNNNNNGTC	1 cut(s)	56
EaeI	YGGCCR	3 cut(s)	88, 111, 295
EagI	CGGCCG	2 cut(s)	88, 295
Eam1104I	CTCTTC	1 cut(s)	82
EarI	CTCTTC	1 cut(s)	82
Ecl136II	GAGCTC	1 cut(s)	232
EclXI	CGGCCG	2 cut(s)	88, 295
Eco130I	CCWWGG	2 cut(s)	32, 338
Eco147I	AGGCCT	1 cut(s)	84
Eco24I	GRGCYC	1 cut(s)	234
Eco47I	GGWCC	1 cut(s)	335
Eco52I	CGGCCG	2 cut(s)	88, 295
Eco53kI	GAGCTC	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	63
Eco91I	GGTNACC	1 cut(s)	64
EcoICRI	GAGCTC	1 cut(s)	232
EcoO65I	GGTNACC	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	24
EcoT14I	CCWWGG	2 cut(s)	32, 338
EcoT38I	GRGCYC	1 cut(s)	234
ErhI	CCWWGG	2 cut(s)	32, 338
FaeI	CATG	2 cut(s)	36, 64
FaiI	YATR	2 cut(s)	34, 62
FatI	CATG	2 cut(s)	32, 60
FbaI	TGATCA	1 cut(s)	19
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	5 cut(s)	124, 203, 206, 209, 298
FokI	GGATG	1 cut(s)	299
FriOI	GRGCYC	1 cut(s)	234
Fsp4HI	GCNGC	5 cut(s)	124, 203, 206, 209, 298
GlaI	GCGC	4 cut(s)	38, 73, 201, 244
GluI	GCNGC	5 cut(s)	124, 203, 206, 209, 298
GsuI	CTGGAG	2 cut(s)	47, 146
HaeII	RGCGCY	1 cut(s)	246
HaeIII	GGCC	5 cut(s)	84, 90, 113, 218, 297
HapII	CCGG	3 cut(s)	120, 127, 324
HhaI	GCGC	4 cut(s)	39, 74, 202, 245
Hin1I	GRCGYC	1 cut(s)	237
Hin1II	CATG	2 cut(s)	36, 64
Hin6I	GCGC	4 cut(s)	37, 72, 200, 243
HinP1I	GCGC	4 cut(s)	37, 72, 200, 243
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HpaII	CCGG	3 cut(s)	120, 127, 324
HphI	GGTGA	2 cut(s)	14, 58
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	2 cut(s)	19, 264
Hpy8I	GTNNAC	1 cut(s)	154
Hpy99I	CGWCG	3 cut(s)	155, 239, 251
HpyAV	CCTTC	1 cut(s)	301
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4IV	ACGT	2 cut(s)	150, 237
HpyCH4V	TGCA	1 cut(s)	274
HpyF10VI	GCNNNNNNNGC	3 cut(s)	208, 249, 287
HpySE526I	ACGT	2 cut(s)	150, 237
Hsp92I	GRCGYC	1 cut(s)	237
Hsp92II	CATG	2 cut(s)	36, 64
HspAI	GCGC	4 cut(s)	37, 72, 200, 243
KroI	GCCGGC	1 cut(s)	119
KroNI	GCCGGC	1 cut(s)	121
Ksp22I	TGATCA	1 cut(s)	19
Kzo9I	GATC	1 cut(s)	19
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	8 cut(s)	11, 38, 66, 82, 133, 140, 176, 337
Lsp1109I	GCAGC	2 cut(s)	110, 220
LweI	GCATC	3 cut(s)	277, 295, 309
MaeII	ACGT	2 cut(s)	150, 237
MaeIII	GTNAC	3 cut(s)	64, 92, 220
MalI	GATC	1 cut(s)	21
MboI	GATC	1 cut(s)	19
MboII	GAAGA	1 cut(s)	69
MhlI	GDGCHC	1 cut(s)	234
MlsI	TGGCCA	1 cut(s)	113
MluNI	TGGCCA	1 cut(s)	113
MnlI	CCTC	7 cut(s)	85, 95, 148, 170, 207, 320, 326
Mox20I	TGGCCA	1 cut(s)	113
MroNI	GCCGGC	1 cut(s)	119
MscI	TGGCCA	1 cut(s)	113
Msp20I	TGGCCA	1 cut(s)	113
MspI	CCGG	3 cut(s)	120, 127, 324
MspR9I	CCNGG	1 cut(s)	26
MvaI	CCWGG	1 cut(s)	26
MvnI	CGCG	2 cut(s)	39, 200
MwoI	GCNNNNNNNGC	3 cut(s)	208, 249, 287
NaeI	GCCGGC	1 cut(s)	121
NcoI	CCATGG	1 cut(s)	32
NdeII	GATC	1 cut(s)	19
NgoMIV	GCCGGC	1 cut(s)	119
NlaIII	CATG	2 cut(s)	36, 64
NlaIV	GGNNCC	1 cut(s)	30
NmeAIII	GCCGAG	2 cut(s)	66, 237
NmuCI	GTSAC	3 cut(s)	64, 92, 220
PaqCI	CACCTGC	1 cut(s)	77
PceI	AGGCCT	1 cut(s)	84
PcsI	WCGNNNNNNNCGW	3 cut(s)	234, 243, 300
PdiI	GCCGGC	1 cut(s)	121
PflFI	GACNNNGTC	1 cut(s)	53
PkrI	GCNGC	5 cut(s)	125, 204, 207, 210, 299
Psp124BI	GAGCTC	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	24
PspEI	GGTNACC	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	24
PspN4I	GGNNCC	1 cut(s)	30
PspPI	GGNCC	2 cut(s)	216, 335
PsyI	GACNNNGTC	1 cut(s)	53
SacI	GAGCTC	1 cut(s)	234
SalI	GTCGAC	1 cut(s)	152
SatI	GCNGC	5 cut(s)	124, 203, 206, 209, 298
Sau3AI	GATC	1 cut(s)	19
Sau96I	GGNCC	2 cut(s)	216, 335
ScrFI	CCNGG	1 cut(s)	26
SduI	GDGCHC	1 cut(s)	234
SetI	ASST	8 cut(s)	27, 45, 57, 71, 153, 234, 240, 344
SfaNI	GCATC	3 cut(s)	277, 295, 309
SinI	GGWCC	1 cut(s)	335
SseBI	AGGCCT	1 cut(s)	84
SsiI	CCGC	5 cut(s)	157, 198, 203, 206, 298
SstI	GAGCTC	1 cut(s)	234
StuI	AGGCCT	1 cut(s)	84
StyD4I	CCNGG	1 cut(s)	24
StyI	CCWWGG	2 cut(s)	32, 338
TaaI	ACNGT	1 cut(s)	226
TaiI	ACGT	2 cut(s)	153, 240
TaqI	TCGA	4 cut(s)	153, 228, 234, 303
TauI	GCSGC	3 cut(s)	205, 208, 300
TseFI	GTSAC	3 cut(s)	64, 92, 220
TseI	GCWGC	2 cut(s)	123, 208
Tsp45I	GTSAC	3 cut(s)	64, 92, 220
TspDTI	ATGAA	1 cut(s)	192
Tth111I	GACNNNGTC	1 cut(s)	53
VpaK11BI	GGWCC	1 cut(s)	335
XmiI	GTMKAC	1 cut(s)	153
ZraI	GACGTC	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.