pycom12g09740

Protein of unknown function (DUF668)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Forward (+)
11548451 .. 11550157
1707 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1707 bp
ATGGGGGGTGAGATAGTGTCTGGGTCCTGGTTTGGTAGTTTGAGGTTCTCATGGAGTCGTTTGGCGGAGGCTGACAAGCCGGTGATTGGAATTCTGGCATTTGAAATTGCGGGGTTGATGTTAAAGATGGTTAATTTATGGAATAGTGTGAGTGAGAATGAGATGCTTAGGTTGAGGGAAGAGATTGTTAACTTGATTGGGGTCAGAAGGCTCGTGTCTGACAATGATGATTACTTGATGGAACTTGCACTGAATGAGATAATTGAGGATTTGGGATATCTGGCAATGTCTGTCGTCAGGCTTGGGAAGAAGTGCACTGACCCTGTGTATCACCATTTTGAAGAAATTTTCGAGGACCCTGTCGAGAATGGTTTTCAGTGGCTTGGATGGGCTTACAGGTGGAGCAAAATGGAGAGGAAAGTGAAGAAAATGGAGAAATTTGTTGAAGCTACAATGCAATTATCGCAGGAGCTGGAAGTCCTGGCAGAGCTTGAGCAAACTCTGAGGAGAATGCGTGCTAATCCTGAAGTAAATCGGGTAAAATTGCTTGAGTTTCAACAGAAGGTAATGTGGCGGCGTCAAGTAGTGAAAATTTTACAAGATACGTCTCCATGGAGTAGAACATATGATTACATTGTCCGACTTTTGGCAAGATCGATTTTCACAATGTTAGAGAGGATAAAGCTGGTCTTTGGATTTAATCAAATGGCTTTGGGAGAGGGAATGGATAGCTCTGAAGTTATCAATTCTGTTTGTCTTTCCCACAGTCATTCATTTTCTGCTCTTATGCACTCTTCCGTTCATCCATCTGATGGTAATCCATGTGGGTTATATTCTGAACCTCTTGGGAGGTCGCTTACAAAGCTGAGGTTTAATGCTGGCAAGAATAGAACAAACAAGCAGTGGCAAGCTCATCACCAGTCATCCATCCACCATGGAAGTTTTTCCCAACTAAAAGCCAAACGGTTTGCTCATGTTCGGCCTTTTAAAGAATGTATGACGGGTGGAAGCAATTCTCCTGTTCTTGAGAGCTGCAAGCCAGATATGGGTGGTTCTATGAGTTTGAGAAGTACCAGTATCAAACATTTTGATGACTTAAAGTACACACATATGGGATCTCAATCTTTCAGCCACGGCATCTATTCTAAACTGTCCCTGTTCAGTTCAAAATGCACACTATTAAATGCTCCACCTTCTACCCTTGGCGATGCTGCTCTAGCTCTCCATTACGCATATGTGATAGTTTTGATTGAAAAGATAGCTTCATCACCTCACTTGATCAGCCTTGATGAAAGATCTAATCTTTACAATATGTTGACCACAACCATAAGAGCTGCTCTGAGAGCTAGACTAAAGTCATATGCCAAAACTATGGGCTCATCTGTGTATAATCCTGCCCTTGCAGGCGAGTGGAATCGAGCAATGGAGCAGATCTTGGGATGGCTTGCTCCACTCGCCCATAACATGATACGGTGGCATTCTGACCACAATATTGTGAAGCAGCAGAAAGTTTCCAAGACAAATGTGCTTCTGGTCCAGACCCTCTACTTTGCAAGTCAGGCTAAAACTGAAGATGCAATTACAGAGCTTCTCATTGGTCTGAACTATATGTGCATGGTTGATGAACTTAATAGGAAGGCTATGCGAGATGCTGGTGGCAGCCGGCCATACGATGATTATATGCTCAAGCAGGATGAAATTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

569

Amino Acids

64.68

Weight (kDa)

8.83

Isoelectric Point (pI)

55.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3475 PF11961 31 - 87 6e-23 Domain of unknown function (DUF3475)
DUF668 PF05003 400 - 491 3.5e-31 Protein of unknown function (DUF668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 812
AciI CCGC 3 cut(s) 65, 110, 574
AclWI GGATC 1 cut(s) 1123
AcoI YGGCCR 1 cut(s) 1664
AcsI RAATTY 4 cut(s) 90, 345, 437, 591
AcuI CTGAAG 3 cut(s) 546, 756, 1590
AcyI GRCGYC 1 cut(s) 577
AfaI GTAC 2 cut(s) 1072, 1103
AfiI CCNNNNNNNGG 4 cut(s) 86, 646, 812, 1046
AgsI TTSAA 6 cut(s) 104, 341, 446, 557, 1167, 1253
AjnI CCWGG 2 cut(s) 26, 480
Alw21I GWGCWC 1 cut(s) 317
Alw26I GTCTC 1 cut(s) 612
Alw44I GTGCAC 1 cut(s) 313
AlwI GGATC 1 cut(s) 1123
AlwNI CAGNNNCTG 1 cut(s) 472
AoxI GGCC 2 cut(s) 980, 1664
ApaLI GTGCAC 1 cut(s) 313
ApeKI GCWGC 5 cut(s) 1032, 1211, 1334, 1501, 1659
ApoI RAATTY 4 cut(s) 90, 345, 437, 591
Asp700I GAANNNNTTC 2 cut(s) 943, 1012
AspS9I GGNCC 3 cut(s) 24, 355, 1534
AsuHPI GGTGA 5 cut(s) 20, 94, 323, 908, 1260
AvaII GGWCC 3 cut(s) 24, 355, 1534
BaeGI GKGCMC 1 cut(s) 317
BanII GRGCYC 1 cut(s) 1379
BauI CACGAG 1 cut(s) 212
Bbv12I GWGCWC 1 cut(s) 317
BbvCI CCTCAGC 1 cut(s) 866
BbvI GCAGC 5 cut(s) 1019, 1198, 1321, 1513, 1671
BccI CCATC 7 cut(s) 121, 232, 381, 806, 814, 935, 1434
BceAI ACGGC 1 cut(s) 1150
BciT130I CCWGG 2 cut(s) 28, 482
BclI TGATCA 1 cut(s) 1278
BcoDI GTCTC 1 cut(s) 612
BfaI CTAG 2 cut(s) 1217, 1347
BglII AGATCT 2 cut(s) 1295, 1431
BisI GCNGC 6 cut(s) 575, 1033, 1212, 1335, 1502, 1660
BlsI GCNGC 6 cut(s) 576, 1034, 1213, 1336, 1503, 1661
Bme1390I CCNGG 2 cut(s) 28, 482
Bme18I GGWCC 3 cut(s) 24, 355, 1534
BmgT120I GGNCC 3 cut(s) 24, 355, 1534
BmiI GGNNCC 2 cut(s) 25, 357
BmrFI CCNGG 2 cut(s) 28, 482
BmsI GCATC 5 cut(s) 153, 1146, 1198, 1564, 1639
BoxI GACNNNNGTC 1 cut(s) 1354
Bpu10I CCTNAGC 2 cut(s) 167, 866
BpuEI CTTGAG 4 cut(s) 512, 569, 1046, 1670
Bsa29I ATCGAT 1 cut(s) 656
BsaBI GATNNNNATC 2 cut(s) 816, 1120
BsaHI GRCGYC 1 cut(s) 577
BsaJI CCNNGG 4 cut(s) 611, 934, 1132, 1201
BsaXI ACNNNNNCTCC 2 cut(s) 499, 529
Bsc4I CCNNNNNNNGG 4 cut(s) 86, 646, 812, 1046
Bse118I RCCGGY 2 cut(s) 79, 1662
Bse1I ACTGG 2 cut(s) 919, 1074
Bse3DI GCAATG 2 cut(s) 291, 1428
Bse8I GATNNNNATC 2 cut(s) 816, 1120
BseBI CCWGG 2 cut(s) 28, 482
BseCI ATCGAT 1 cut(s) 656
BseDI CCNNGG 4 cut(s) 611, 934, 1132, 1201
BseGI GGATG 6 cut(s) 392, 802, 923, 927, 1445, 1699
BseJI GATNNNNATC 2 cut(s) 816, 1120
BseLI CCNNNNNNNGG 4 cut(s) 86, 646, 812, 1046
BseMI GCAATG 2 cut(s) 291, 1428
BseMII CTCAG 3 cut(s) 494, 857, 1331
BseNI ACTGG 2 cut(s) 919, 1074
BseRI GAGGAG 1 cut(s) 520
BseSI GKGCMC 1 cut(s) 317
BseXI GCAGC 5 cut(s) 1019, 1198, 1321, 1513, 1671
BshFI GGCC 2 cut(s) 982, 1666
BshVI ATCGAT 1 cut(s) 656
BsiHKAI GWGCWC 1 cut(s) 317
BsiSI CCGG 2 cut(s) 80, 1663
BslFI GGGAC 1 cut(s) 1138
BslI CCNNNNNNNGG 4 cut(s) 86, 646, 812, 1046
BsmAI GTCTC 1 cut(s) 612
BsmBI CGTCTC 1 cut(s) 612
BsmFI GGGAC 1 cut(s) 1138
BsmI GAATGC 2 cut(s) 516, 1477
BsnI GGCC 2 cut(s) 982, 1666
Bsp1286I GDGCHC 2 cut(s) 317, 1379
Bsp143I GATC 5 cut(s) 653, 1115, 1278, 1295, 1431
Bsp19I CCATGG 2 cut(s) 611, 934
BspACI CCGC 3 cut(s) 65, 110, 574
BspANI GGCC 2 cut(s) 982, 1666
BspCNI CTCAG 3 cut(s) 495, 858, 1332
BspDI ATCGAT 1 cut(s) 656
BspLI GGNNCC 2 cut(s) 25, 357
BspPI GGATC 1 cut(s) 1123
BsrDI GCAATG 2 cut(s) 291, 1428
BsrFI RCCGGY 2 cut(s) 79, 1662
BsrI ACTGG 2 cut(s) 919, 1074
BssAI RCCGGY 2 cut(s) 79, 1662
BssECI CCNNGG 4 cut(s) 611, 934, 1132, 1201
BssMI GATC 5 cut(s) 653, 1115, 1278, 1295, 1431
BssNI GRCGYC 1 cut(s) 577
BssSI CACGAG 1 cut(s) 212
BssT1I CCWWGG 3 cut(s) 611, 934, 1201
Bst2BI CACGAG 1 cut(s) 212
Bst2UI CCWGG 2 cut(s) 28, 482
Bst4CI ACNGT 4 cut(s) 767, 966, 1152, 1473
Bst6I CTCTTC 2 cut(s) 174, 799
BstACI GRCGYC 1 cut(s) 577
BstC8I GCNNGC 7 cut(s) 516, 880, 909, 1037, 1405, 1446, 1664
BstDEI CTNAG 4 cut(s) 167, 503, 866, 1340
BstDSI CCRYGG 3 cut(s) 611, 934, 1132
BstF5I GGATG 6 cut(s) 392, 802, 923, 927, 1445, 1699
BstKTI GATC 5 cut(s) 656, 1118, 1281, 1298, 1434
BstMAI GTCTC 1 cut(s) 612
BstMBI GATC 5 cut(s) 653, 1115, 1278, 1295, 1431
BstMWI GCNNNNNNNGC 6 cut(s) 463, 862, 1217, 1343, 1454, 1559
BstNI CCWGG 2 cut(s) 28, 482
BstPAI GACNNNNGTC 1 cut(s) 1354
BstSCI CCNGG 2 cut(s) 26, 480
BstSLI GKGCMC 1 cut(s) 317
BstV1I GCAGC 5 cut(s) 1019, 1198, 1321, 1513, 1671
BstX2I RGATCY 3 cut(s) 1115, 1295, 1431
BstXI CCANNNNNNTGG 1 cut(s) 1372
BstYI RGATCY 3 cut(s) 1115, 1295, 1431
Bsu15I ATCGAT 1 cut(s) 656
BsuRI GGCC 2 cut(s) 982, 1666
BsuTUI ATCGAT 1 cut(s) 656
BtgI CCRYGG 3 cut(s) 611, 934, 1132
BtgZI GCGATG 1 cut(s) 1221
BtsCI GGATG 6 cut(s) 392, 802, 923, 927, 1445, 1699
BtsI GCAGTG 1 cut(s) 908
BtsIMutI CAGTG 4 cut(s) 248, 315, 383, 908
Cac8I GCNNGC 7 cut(s) 516, 880, 909, 1037, 1405, 1446, 1664
CaiI CAGNNNCTG 1 cut(s) 472
Cfr10I RCCGGY 2 cut(s) 79, 1662
Cfr13I GGNCC 3 cut(s) 24, 355, 1534
ClaI ATCGAT 1 cut(s) 656
CseI GACGC 1 cut(s) 566
Csp6I GTAC 2 cut(s) 1071, 1102
CviAII CATG 7 cut(s) 51, 612, 822, 935, 974, 1465, 1615
CviQI GTAC 2 cut(s) 1071, 1102
DdeI CTNAG 4 cut(s) 167, 503, 866, 1340
DpnI GATC 5 cut(s) 655, 1117, 1280, 1297, 1433
DpnII GATC 5 cut(s) 653, 1115, 1278, 1295, 1431
DraI TTTAAA 1 cut(s) 988
EaeI YGGCCR 1 cut(s) 1664
Eam1104I CTCTTC 2 cut(s) 174, 799
EarI CTCTTC 2 cut(s) 174, 799
EciI GGCGGA 1 cut(s) 80
Eco130I CCWWGG 3 cut(s) 611, 934, 1201
Eco24I GRGCYC 1 cut(s) 1379
Eco32I GATATC 1 cut(s) 278
Eco47I GGWCC 3 cut(s) 24, 355, 1534
Eco57I CTGAAG 3 cut(s) 546, 756, 1590
EcoO109I RGGNCCY 2 cut(s) 24, 355
EcoRI GAATTC 1 cut(s) 90
EcoRII CCWGG 2 cut(s) 26, 480
EcoRV GATATC 1 cut(s) 278
EcoT14I CCWWGG 3 cut(s) 611, 934, 1201
EcoT38I GRGCYC 1 cut(s) 1379
ErhI CCWWGG 3 cut(s) 611, 934, 1201
Esp3I CGTCTC 1 cut(s) 612
FaeI CATG 7 cut(s) 54, 615, 825, 938, 977, 1468, 1618
FalI AAGNNNNNCTT 2 cut(s) 674, 706
FaqI GGGAC 1 cut(s) 1138
FatI CATG 7 cut(s) 50, 611, 821, 934, 973, 1464, 1614
FauI CCCGC 1 cut(s) 103
FauNDI CATATG 4 cut(s) 625, 1110, 1234, 1360
FbaI TGATCA 1 cut(s) 1278
Fnu4HI GCNGC 6 cut(s) 575, 1033, 1212, 1335, 1502, 1660
FokI GGATG 5 cut(s) 399, 789, 910, 914, 1452
FriOI GRGCYC 1 cut(s) 1379
Fsp4HI GCNGC 6 cut(s) 575, 1033, 1212, 1335, 1502, 1660
FspBI CTAG 2 cut(s) 1217, 1347
GluI GCNGC 6 cut(s) 575, 1033, 1212, 1335, 1502, 1660
HaeIII GGCC 2 cut(s) 982, 1666
HapII CCGG 2 cut(s) 80, 1663
HgaI GACGC 1 cut(s) 566
Hin1I GRCGYC 1 cut(s) 577
Hin1II CATG 7 cut(s) 54, 615, 825, 938, 977, 1468, 1618
HincII GTYRAC 2 cut(s) 190, 1317
HindII GTYRAC 2 cut(s) 190, 1317
HinfI GANTC 2 cut(s) 55, 1414
HpaI GTTAAC 1 cut(s) 190
HpaII CCGG 2 cut(s) 80, 1663
HphI GGTGA 5 cut(s) 20, 94, 323, 908, 1260
Hpy166II GTNNAC 4 cut(s) 190, 315, 1104, 1317
Hpy188III TCNNGA 4 cut(s) 364, 524, 1025, 1537
Hpy8I GTNNAC 4 cut(s) 190, 315, 1104, 1317
HpyAV CCTTC 4 cut(s) 201, 556, 1203, 1630
HpyCH4III ACNGT 4 cut(s) 767, 966, 1152, 1473
HpyCH4IV ACGT 1 cut(s) 605
HpyF10VI GCNNNNNNNGC 6 cut(s) 463, 862, 1217, 1343, 1454, 1559
HpyF3I CTNAG 4 cut(s) 167, 503, 866, 1340
HpySE526I ACGT 1 cut(s) 605
Hsp92I GRCGYC 1 cut(s) 577
Hsp92II CATG 7 cut(s) 54, 615, 825, 938, 977, 1468, 1618
KroI GCCGGC 1 cut(s) 1662
KroNI GCCGGC 1 cut(s) 1664
Ksp22I TGATCA 1 cut(s) 1278
KspAI GTTAAC 1 cut(s) 190
Kzo9I GATC 5 cut(s) 653, 1115, 1278, 1295, 1431
LmnI GCTCC 5 cut(s) 402, 469, 1192, 1426, 1453
Lsp1109I GCAGC 5 cut(s) 1019, 1198, 1321, 1513, 1671
LweI GCATC 5 cut(s) 153, 1146, 1198, 1564, 1639
MaeI CTAG 2 cut(s) 1217, 1347
MaeII ACGT 1 cut(s) 605
MalI GATC 5 cut(s) 655, 1117, 1280, 1297, 1433
MboI GATC 5 cut(s) 653, 1115, 1278, 1295, 1431
MboII GAAGA 6 cut(s) 191, 319, 353, 436, 786, 1583
MflI RGATCY 3 cut(s) 1115, 1295, 1431
MhlI GDGCHC 2 cut(s) 317, 1379
MlyI GAGTC 1 cut(s) 64
MmeI TCCRAC 1 cut(s) 664
MroNI GCCGGC 1 cut(s) 1662
MroXI GAANNNNTTC 2 cut(s) 943, 1012
MslI CAYNNNNRTG 2 cut(s) 1089, 1109
MspI CCGG 2 cut(s) 80, 1663
MspR9I CCNGG 2 cut(s) 28, 482
Mva1269I GAATGC 2 cut(s) 516, 1477
MvaI CCWGG 2 cut(s) 28, 482
MwoI GCNNNNNNNGC 6 cut(s) 463, 862, 1217, 1343, 1454, 1559
NaeI GCCGGC 1 cut(s) 1664
NcoI CCATGG 2 cut(s) 611, 934
NdeI CATATG 4 cut(s) 625, 1110, 1234, 1360
NdeII GATC 5 cut(s) 653, 1115, 1278, 1295, 1431
NgoMIV GCCGGC 1 cut(s) 1662
NlaIII CATG 7 cut(s) 54, 615, 825, 938, 977, 1468, 1618
NlaIV GGNNCC 2 cut(s) 25, 357
PctI GAATGC 2 cut(s) 516, 1477
PdiI GCCGGC 1 cut(s) 1664
PdmI GAANNNNTTC 2 cut(s) 943, 1012
PfeI GAWTC 1 cut(s) 1414
PflFI GACNNNGTC 1 cut(s) 359
PflMI CCANNNNNTGG 1 cut(s) 812
PkrI GCNGC 6 cut(s) 576, 1034, 1213, 1336, 1503, 1661
PleI GAGTC 1 cut(s) 63
PpsI GAGTC 1 cut(s) 63
PpuMI RGGWCCY 2 cut(s) 24, 355
PshAI GACNNNNGTC 1 cut(s) 1354
Psp5II RGGWCCY 2 cut(s) 24, 355
Psp6I CCWGG 2 cut(s) 26, 480
PspGI CCWGG 2 cut(s) 26, 480
PspN4I GGNNCC 2 cut(s) 25, 357
PspPI GGNCC 3 cut(s) 24, 355, 1534
PspPPI RGGWCCY 2 cut(s) 24, 355
PstNI CAGNNNCTG 1 cut(s) 472
PsuI RGATCY 3 cut(s) 1115, 1295, 1431
PsyI GACNNNGTC 1 cut(s) 359
RsaI GTAC 2 cut(s) 1072, 1103
RsaNI GTAC 2 cut(s) 1071, 1102
RseI CAYNNNNRTG 2 cut(s) 1089, 1109
SatI GCNGC 6 cut(s) 575, 1033, 1212, 1335, 1502, 1660
Sau3AI GATC 5 cut(s) 653, 1115, 1278, 1295, 1431
Sau96I GGNCC 3 cut(s) 24, 355, 1534
SchI GAGTC 1 cut(s) 64
ScrFI CCNGG 2 cut(s) 28, 482
SduI GDGCHC 2 cut(s) 317, 1379
SfaNI GCATC 5 cut(s) 153, 1146, 1198, 1564, 1639
SinI GGWCC 3 cut(s) 24, 355, 1534
SmiMI CAYNNNNRTG 2 cut(s) 1089, 1109
SmlI CTYRAG 4 cut(s) 491, 548, 1025, 1685
SmoI CTYRAG 4 cut(s) 491, 548, 1025, 1685
SsiI CCGC 3 cut(s) 65, 110, 574
SspI AATATT 1 cut(s) 1492
SspMI CTAG 2 cut(s) 1217, 1347
StyD4I CCNGG 2 cut(s) 26, 480
StyI CCWWGG 3 cut(s) 611, 934, 1201
TaaI ACNGT 4 cut(s) 767, 966, 1152, 1473
TaiI ACGT 1 cut(s) 608
TaqI TCGA 4 cut(s) 351, 363, 656, 1417
TatI WGTACW 1 cut(s) 1101
TauI GCSGC 1 cut(s) 577
TfiI GAWTC 1 cut(s) 1414
TscAI CASTG 4 cut(s) 255, 322, 383, 908
TseI GCWGC 5 cut(s) 1032, 1211, 1334, 1501, 1659
TspDTI ATGAA 5 cut(s) 762, 791, 1254, 1305, 1638
TspGWI ACGGA 1 cut(s) 787
TspRI CASTG 4 cut(s) 255, 322, 383, 908
Tth111I GACNNNGTC 1 cut(s) 359
Van91I CCANNNNNTGG 1 cut(s) 812
VneI GTGCAC 1 cut(s) 313
VpaK11BI GGWCC 3 cut(s) 24, 355, 1534
XapI RAATTY 4 cut(s) 90, 345, 437, 591
XmnI GAANNNNTTC 2 cut(s) 943, 1012
XspI CTAG 2 cut(s) 1217, 1347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.