Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0010580

Physical Location & Seq

Genomic Coordinates Reverse (-)

9715784 .. 9719143

Gene Structure 3360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0120800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGTAGAAATTAATTTAGCTTCTATTTCATTTTTCATCTACTATAAAATGGCTTTCTCTGAAGTACGGTATTCCTCATCAAGAACCATGTCTCCAAAAAAATCCTCACCCGACTCCACTCTCTTGAAGTTGAAAAGAATGTCGCAAAAAGTGTTTGATTATAACCTATTTAGACGCACTGCCAAATCTCCTATCTTCTCCACCATCTCATTTGCTGCCATATTCTTTCTCCTCTATTCATCAGACACCATAGTCTCGATCTCTAACCTTCCCATGCATCCGGTTGACCTCAAAAGTCATAAAATTGTTGACCATCGCCAGGAACCAACCTTGAATACTACTACTAATATCCAAGAAGAGATCAGCATTGATGAAGGTCCGGATGAAGTTTACGACCCTCTAATCCCTCCCGACAATGTAACAAAATTAAGAAGAAAGACTAGTGTGGTTCAGGCGGAAGCTTCCAGAGCTGGAGATACTCCGGTCCAACAGCTTGACACAGCAATTCCACAGTCGAGTTCTCCAGTTTCTCAACAACGGATGCAGCATTCAATTCTACATGATATGGTTTTCACCAGCCAAGTCATTTGGAAAAAGAGAATTCTTCGCCATGGACAGCCTCTTCAAAGCTCATCCTCAAGGATGTTTGATGCTATTATCGAAAAGCATGGATTCGGCACGCGGATACCGAATCCTGAAACCATTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3475 DUF668

Protein Analysis

236

Amino Acids

26.82

Weight (kDa)

9.39

Isoelectric Point (pI)

65.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010580)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17590 FvH4_6g17590 FvH4_6g17590
malus_domestica	MD12G1099400.v1.1 MD14G1093600.v1.1
prunus_persica	Prupe.7G119700_v2.0.a1 Prupe.7G119700_v2.0.a1
pyrus_communis	pycom12g09420 pycom12g09430 pycom12g09740
rosa_chinensis	RchiOBHm_Chr3g0471861
rosa_laevigata	RLG00000024123
rosa_multiflora	Rmu_sc0000423.1_g000028
rosa_roxburghii	Rroxscaffold_6G00409470
rosa_rugosa	Rorug03G0120800
rosa_samantha	Rh3AG172100 Rh3BG197500 Rh3CG188500 Rh3CG196100 Rh3DG176800
rosa_wichuraiana	Rw3G016840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	162
AasI	GACNNNNNNGTC	1 cut(s)	251
AccII	CGCG	1 cut(s)	682
AccIII	TCCGGA	1 cut(s)	379
AciI	CCGC	2 cut(s)	455, 682
AcsI	RAATTY	1 cut(s)	600
AcuI	CTGAAG	1 cut(s)	81
AfaI	GTAC	1 cut(s)	66
AfiI	CCNNNNNNNGG	1 cut(s)	319
AgsI	TTSAA	5 cut(s)	127, 133, 334, 552, 626
AhlI	ACTAGT	1 cut(s)	440
AjnI	CCWGG	1 cut(s)	318
AloI	GAACNNNNNNTCC	2 cut(s)	76, 108
AluBI	AGCT	5 cut(s)	20, 461, 470, 493, 630
AluI	AGCT	5 cut(s)	20, 461, 470, 493, 630
Alw26I	GTCTC	2 cut(s)	96, 259
Aor13HI	TCCGGA	1 cut(s)	379
ApeKI	GCWGC	2 cut(s)	215, 544
ApoI	RAATTY	1 cut(s)	600
AseI	ATTAAT	1 cut(s)	12
AspS9I	GGNCC	2 cut(s)	377, 484
AsuHPI	GGTGA	2 cut(s)	99, 565
AvaII	GGWCC	2 cut(s)	377, 484
BaeI	ACNNNNGTAYC	2 cut(s)	468, 501
BbvI	GCAGC	2 cut(s)	202, 556
BccI	CCATC	2 cut(s)	212, 321
BciT130I	CCWGG	1 cut(s)	320
BciVI	GTATCC	1 cut(s)	678
BcoDI	GTCTC	2 cut(s)	96, 259
BcuI	ACTAGT	1 cut(s)	440
BfaI	CTAG	1 cut(s)	441
BfuI	GTATCC	1 cut(s)	678
BisI	GCNGC	2 cut(s)	216, 545
BlsI	GCNGC	2 cut(s)	217, 546
Bme1390I	CCNGG	1 cut(s)	320
Bme18I	GGWCC	2 cut(s)	377, 484
BmgT120I	GGNCC	2 cut(s)	377, 484
BmiI	GGNNCC	1 cut(s)	324
BmrFI	CCNGG	1 cut(s)	320
BmsI	GCATC	3 cut(s)	286, 531, 640
BpmI	CTGGAG	2 cut(s)	492, 507
BpuEI	CTTGAG	1 cut(s)	622
BsaJI	CCNNGG	1 cut(s)	610
BsaWI	WCCGGW	3 cut(s)	280, 379, 481
BsaXI	ACNNNNNCTCC	2 cut(s)	76, 106
Bsc4I	CCNNNNNNNGG	1 cut(s)	319
Bse1I	ACTGG	1 cut(s)	524
BseAI	TCCGGA	1 cut(s)	379
BseBI	CCWGG	1 cut(s)	320
BseDI	CCNNGG	1 cut(s)	610
BseGI	GGATG	5 cut(s)	277, 388, 546, 632, 648
BseLI	CCNNNNNNNGG	1 cut(s)	319
BseNI	ACTGG	1 cut(s)	524
BseRI	GAGGAG	1 cut(s)	221
BseXI	GCAGC	2 cut(s)	202, 556
Bsh1236I	CGCG	1 cut(s)	682
BsiSI	CCGG	3 cut(s)	281, 380, 482
BslI	CCNNNNNNNGG	1 cut(s)	319
BsmAI	GTCTC	2 cut(s)	96, 259
BsmI	GAATGC	1 cut(s)	547
Bsp13I	TCCGGA	1 cut(s)	379
Bsp143I	GATC	2 cut(s)	258, 360
Bsp19I	CCATGG	1 cut(s)	610
BspACI	CCGC	2 cut(s)	455, 682
BspEI	TCCGGA	1 cut(s)	379
BspFNI	CGCG	1 cut(s)	682
BspLI	GGNNCC	1 cut(s)	324
BsrI	ACTGG	1 cut(s)	524
BssECI	CCNNGG	1 cut(s)	610
BssMI	GATC	2 cut(s)	258, 360
BssT1I	CCWWGG	1 cut(s)	610
Bst2UI	CCWGG	1 cut(s)	320
Bst4CI	ACNGT	2 cut(s)	69, 513
Bst6I	CTCTTC	2 cut(s)	351, 627
BstC8I	GCNNGC	1 cut(s)	680
BstDSI	CCRYGG	1 cut(s)	610
BstF5I	GGATG	5 cut(s)	277, 388, 546, 632, 648
BstFNI	CGCG	1 cut(s)	682
BstKTI	GATC	2 cut(s)	261, 363
BstMAI	GTCTC	2 cut(s)	96, 259
BstMBI	GATC	2 cut(s)	258, 360
BstMWI	GCNNNNNNNGC	1 cut(s)	467
BstNI	CCWGG	1 cut(s)	320
BstSCI	CCNGG	1 cut(s)	318
BstUI	CGCG	1 cut(s)	682
BstV1I	GCAGC	2 cut(s)	202, 556
BsuI	GTATCC	1 cut(s)	678
BtgI	CCRYGG	1 cut(s)	610
BtgZI	GCGATG	1 cut(s)	299
BtsCI	GGATG	5 cut(s)	277, 388, 546, 632, 648
BtsI	GCAGTG	1 cut(s)	177
BtsIMutI	CAGTG	1 cut(s)	177
Cac8I	GCNNGC	1 cut(s)	680
Cfr13I	GGNCC	2 cut(s)	377, 484
CseI	GACGC	1 cut(s)	183
Csp6I	GTAC	1 cut(s)	65
CviAII	CATG	5 cut(s)	88, 274, 560, 611, 668
CviJI	RGCY	8 cut(s)	20, 53, 461, 470, 493, 579, 619, 630
CviKI_1	RGCY	8 cut(s)	20, 53, 461, 470, 493, 579, 619, 630
CviQI	GTAC	1 cut(s)	65
DpnI	GATC	2 cut(s)	260, 362
DpnII	GATC	2 cut(s)	258, 360
DrdI	GACNNNNNNGTC	1 cut(s)	251
DseDI	GACNNNNNNGTC	1 cut(s)	251
Eam1104I	CTCTTC	2 cut(s)	351, 627
EarI	CTCTTC	2 cut(s)	351, 627
EciI	GGCGGA	1 cut(s)	470
Eco130I	CCWWGG	1 cut(s)	610
Eco47I	GGWCC	2 cut(s)	377, 484
Eco57I	CTGAAG	1 cut(s)	81
EcoRI	GAATTC	1 cut(s)	600
EcoRII	CCWGG	1 cut(s)	318
EcoT14I	CCWWGG	1 cut(s)	610
EcoT22I	ATGCAT	1 cut(s)	279
ErhI	CCWWGG	1 cut(s)	610
FaeI	CATG	5 cut(s)	91, 277, 563, 614, 671
FatI	CATG	5 cut(s)	87, 273, 559, 610, 667
Fnu4HI	GCNGC	2 cut(s)	216, 545
FokI	GGATG	5 cut(s)	264, 395, 553, 619, 655
Fsp4HI	GCNGC	2 cut(s)	216, 545
FspBI	CTAG	1 cut(s)	441
GluI	GCNGC	2 cut(s)	216, 545
GsuI	CTGGAG	2 cut(s)	492, 507
HapII	CCGG	3 cut(s)	281, 380, 482
HgaI	GACGC	1 cut(s)	183
Hin1II	CATG	5 cut(s)	91, 277, 563, 614, 671
HincII	GTYRAC	2 cut(s)	286, 310
HindII	GTYRAC	2 cut(s)	286, 310
HindIII	AAGCTT	1 cut(s)	459
HinfI	GANTC	3 cut(s)	113, 672, 691
HpaII	CCGG	3 cut(s)	281, 380, 482
HphI	GGTGA	2 cut(s)	99, 565
Hpy166II	GTNNAC	3 cut(s)	286, 310, 391
Hpy188I	TCNGA	2 cut(s)	61, 244
Hpy188III	TCNNGA	7 cut(s)	81, 124, 256, 380, 410, 465, 695
Hpy8I	GTNNAC	3 cut(s)	286, 310, 391
HpyAV	CCTTC	2 cut(s)	278, 368
HpyCH4III	ACNGT	2 cut(s)	69, 513
HpyCH4V	TGCA	2 cut(s)	277, 544
HpyF10VI	GCNNNNNNNGC	1 cut(s)	467
Hsp92II	CATG	5 cut(s)	91, 277, 563, 614, 671
Kpn2I	TCCGGA	1 cut(s)	379
Kzo9I	GATC	2 cut(s)	258, 360
Lsp1109I	GCAGC	2 cut(s)	202, 556
LweI	GCATC	3 cut(s)	286, 531, 640
MaeI	CTAG	1 cut(s)	441
MaeIII	GTNAC	1 cut(s)	418
MalI	GATC	2 cut(s)	260, 362
MboI	GATC	2 cut(s)	258, 360
MboII	GAAGA	5 cut(s)	187, 368, 444, 596, 614
MluCI	AATT	7 cut(s)	9, 13, 303, 425, 504, 552, 600
MlyI	GAGTC	1 cut(s)	107
MmeI	TCCRAC	1 cut(s)	511
MnlI	CCTC	8 cut(s)	85, 115, 242, 299, 408, 417, 630, 646
Mph1103I	ATGCAT	1 cut(s)	279
MroI	TCCGGA	1 cut(s)	379
MseI	TTAA	2 cut(s)	12, 428
MspI	CCGG	3 cut(s)	281, 380, 482
MspR9I	CCNGG	1 cut(s)	320
Mva1269I	GAATGC	1 cut(s)	547
MvaI	CCWGG	1 cut(s)	320
MvnI	CGCG	1 cut(s)	682
MwoI	GCNNNNNNNGC	1 cut(s)	467
NcoI	CCATGG	1 cut(s)	610
NdeII	GATC	2 cut(s)	258, 360
NlaIII	CATG	5 cut(s)	91, 277, 563, 614, 671
NlaIV	GGNNCC	1 cut(s)	324
NsiI	ATGCAT	1 cut(s)	279
PcsI	WCGNNNNNNNCGW	1 cut(s)	686
PctI	GAATGC	1 cut(s)	547
PfeI	GAWTC	2 cut(s)	672, 691
PkrI	GCNGC	2 cut(s)	217, 546
PleI	GAGTC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	107
PshBI	ATTAAT	1 cut(s)	12
PsiI	TTATAA	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	318
PspGI	CCWGG	1 cut(s)	318
PspN4I	GGNNCC	1 cut(s)	324
PspPI	GGNCC	2 cut(s)	377, 484
RsaI	GTAC	1 cut(s)	66
RsaNI	GTAC	1 cut(s)	65
SaqAI	TTAA	2 cut(s)	12, 428
SatI	GCNGC	2 cut(s)	216, 545
Sau3AI	GATC	2 cut(s)	258, 360
Sau96I	GGNCC	2 cut(s)	377, 484
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	1 cut(s)	320
SfaNI	GCATC	3 cut(s)	286, 531, 640
SinI	GGWCC	2 cut(s)	377, 484
SmlI	CTYRAG	1 cut(s)	637
SmoI	CTYRAG	1 cut(s)	637
SpeI	ACTAGT	1 cut(s)	440
Sse9I	AATT	7 cut(s)	9, 13, 303, 425, 504, 552, 600
SsiI	CCGC	2 cut(s)	455, 682
SspMI	CTAG	1 cut(s)	441
StyD4I	CCNGG	1 cut(s)	318
StyI	CCWWGG	1 cut(s)	610
TaaI	ACNGT	2 cut(s)	69, 513
TaqI	TCGA	3 cut(s)	257, 515, 660
TasI	AATT	7 cut(s)	9, 13, 303, 425, 504, 552, 600
TfiI	GAWTC	2 cut(s)	672, 691
Tru1I	TTAA	2 cut(s)	12, 428
Tru9I	TTAA	2 cut(s)	12, 428
TscAI	CASTG	1 cut(s)	184
TseI	GCWGC	2 cut(s)	215, 544
TspDTI	ATGAA	5 cut(s)	18, 25, 228, 387, 399
TspGWI	ACGGA	1 cut(s)	553
TspRI	CASTG	1 cut(s)	184
VpaK11BI	GGWCC	2 cut(s)	377, 484
VspI	ATTAAT	1 cut(s)	12
XapI	RAATTY	1 cut(s)	600
XspI	CTAG	1 cut(s)	441
Zsp2I	ATGCAT	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.