Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0010580

Physical Location & Seq

Genomic Coordinates Forward (+)

18055945 .. 18058828

Gene Structure 2884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G016840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1704 bp

ATGGGGGCTGAGATTGCGTCCGAGTCGTGGTTTGGTAGTTTAAGGTTCTCATGGAGTCGTGTGGTGGAGGCTGAGAAGCCTGTGGTTGGAATTCTGGCGTTTGAAGTTGCGGGGTTGATGTTAAAGATGGTTAATTTGTGGAATAGTTTGAGTGAAAGGGATATGATGAGGATGAGGGAAGAAATTGTTAACTCAACCGGGGTGAGAAGGCTCGTGTCCGAAGACGAAGATTACTTGATGGAACTTGCACTGAATGAGATAATTGAGAACTTGGGATATCTAGCAACATGTGTGGTCAGACTTGGGAAGAGGTGCTCCGATCCTATGTATCACAACTTTGAAATTTTTTTCGAAGATCCTCTTGAGAACGGTATGCCATCATTTGGGTGGGAGTACCGGTGGAAGAAAATGGAGAGGAAAATGAAGAAAATGGACAGGTTTGTTGCAAATACTTTGCAATTGTCACAGGAGCTGGAAGTGCTGGCGGACCTTGAGCAGACCCTGAGGAGAATGCGGGCTAATCCTGCGTTAAGTCAGGTCAGATTGCTTGAGTTTCAGCAGAAGGTAATATGGCAACGTCAAGAAGTGAAGAATCTACAAGACATGTCTCCTTGGGGTAGAAGCTATGATTATGTTGTCCGACTTCTTGCAAGATCCCTTTTTACGATACGAGAGAGGATCAAGCAGGTCTTTAGTTGTGATCAAATGGCTTTTGGACTGGGAAATGATAATTGTGAAGTTAGCATTTCTGAATTTCAACTTAGCAATTCTCATGGTCTCTCTCGCAGTCATTCCTTTTCTGCTCTTATGCAGTCTTCTGTTCACCCATCTGATGCTAATCTCTGTGGGTTCTATTCAGGGCCTCTTGGGAGGTCAGTTTCCAAGCAAAGGCTTAATGCTGGTAAGAATAGAAAAAACAAGCAGCATCAGCAGCCAGTTCAACATGGAAATTATTCACAATTAAAAGCCAGGCGATTTTCTCAAATTGGACCTTTTAAAGGATGTATGACTGGTGCAGGTGGTTCTCCGGTTCTAGAGAGCTGCAAGCCAAACATTGGTGGTTCTATGAGGTTGAGCAGTACTAGTATGAAAGATATGTACACACATATGGGATCTCAGTCTTTCAGCAGCAGGATCTATTCTAAATTGTCCCTGTTCAGTTCAAAATGTTCCTTGTTGACTGCCTCGCCGTCTACACTAGGTGGTGCTGCCCTGGCTCTCCATTATGCAAATATCATTATTTTGATTGAAAAGATAGCATCATCGCCTCATTCGATCAGCATTGACGCAAGACGCGATCTATACAATATGTTAACCACCAGTATACGAACTACTCTGAGAGCCAGACTGAAGTCATATCCCAAAACTACAGCCTCATCAGTCTACAATCCTGCCCTTGCAGGAGAATGGGGTCTCGCGCTTGAACAGATACTGGAATGGCTTGGTCCGCTCGCTCACAACATGATATGGTGGCATTCTGAGCGCAATATTATGAAACAGCAAGAAGTTTCCAGTTCAAATGTCCTTCTGGTTCAGACACTCTACTTTGCCAATCAGGCTAAAACTGAAGCTGCAATCATAGAACTTCTCATAGGTCTGAACTATATATGCATGATTGATGAAATCAATAGGAGGGCTTTGCGAAATGCTGGTGGCAGCAGAGTTTACGACGAGCACATGCTCCGAAGGGTCGAAATTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3475 DUF668

Protein Analysis

567

Amino Acids

64.37

Weight (kDa)

9.23

Isoelectric Point (pI)

60.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3475	PF11961	31 - 87	1.3e-25	Domain of unknown function (DUF3475)
DUF668	PF05003	399 - 489	1.1e-30	Protein of unknown function (DUF668)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010580)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17590 FvH4_6g17590 FvH4_6g17590
malus_domestica	MD12G1099400.v1.1 MD14G1093600.v1.1
prunus_persica	Prupe.7G119700_v2.0.a1 Prupe.7G119700_v2.0.a1
pyrus_communis	pycom12g09420 pycom12g09430 pycom12g09740
rosa_chinensis	RchiOBHm_Chr3g0471861
rosa_laevigata	RLG00000024123
rosa_multiflora	Rmu_sc0000423.1_g000028
rosa_roxburghii	Rroxscaffold_6G00409470
rosa_rugosa	Rorug03G0120800
rosa_samantha	Rh3AG172100 Rh3BG197500 Rh3CG188500 Rh3CG196100 Rh3DG176800
rosa_wichuraiana	Rw3G016840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1007
Acc36I	ACCTGC	2 cut(s)	676, 1007
AccB7I	CCANNNNNTGG	2 cut(s)	383, 1055
AccBSI	CCGCTC	1 cut(s)	1450
AccI	GTMKAC	3 cut(s)	1193, 1324, 1383
AccII	CGCG	2 cut(s)	1296, 1418
AciI	CCGC	4 cut(s)	110, 485, 514, 1448
AclWI	GGATC	6 cut(s)	314, 350, 648, 686, 1120, 1142
AcsI	RAATTY	3 cut(s)	90, 342, 752
AcuI	CTGAAG	2 cut(s)	1370, 1587
AdeI	CACNNNGTG	1 cut(s)	1202
AfaI	GTAC	3 cut(s)	395, 1081, 1100
AfiI	CCNNNNNNNGG	6 cut(s)	27, 86, 383, 888, 998, 1055
AflIII	ACRYGT	2 cut(s)	287, 603
AgeI	ACCGGT	1 cut(s)	396
AgsI	TTSAA	8 cut(s)	104, 341, 758, 941, 1164, 1250, 1424, 1518
AhlI	ACTAGT	1 cut(s)	1082
AjnI	CCWGG	2 cut(s)	968, 1212
AluBI	AGCT	4 cut(s)	472, 624, 1041, 1571
AluI	AGCT	4 cut(s)	472, 624, 1041, 1571
Alw21I	GWGCWC	2 cut(s)	317, 1677
Alw26I	GTCTC	3 cut(s)	612, 782, 1418
AlwI	GGATC	6 cut(s)	314, 350, 648, 686, 1120, 1142
AlwNI	CAGNNNCTG	3 cut(s)	472, 502, 1432
AoxI	GGCC	1 cut(s)	860
ApeKI	GCWGC	7 cut(s)	922, 931, 1041, 1128, 1208, 1571, 1656
ApoI	RAATTY	3 cut(s)	90, 342, 752
AsiGI	ACCGGT	1 cut(s)	396
Asp700I	GAANNNNTTC	1 cut(s)	952
AspLEI	GCGC	2 cut(s)	1420, 1485
AspS9I	GGNCC	4 cut(s)	487, 860, 989, 1445
AsuC2I	CCSGG	1 cut(s)	199
AsuHPI	GGTGA	2 cut(s)	214, 815
AsuII	TTCGAA	1 cut(s)	351
AvaII	GGWCC	3 cut(s)	487, 989, 1445
AxyI	CCTNAGG	1 cut(s)	503
BauI	CACGAG	1 cut(s)	212
BbsI	GAAGAC	2 cut(s)	228, 807
Bbv12I	GWGCWC	2 cut(s)	317, 1677
BbvI	GCAGC	7 cut(s)	934, 943, 1028, 1140, 1195, 1558, 1668
BccI	CCATC	4 cut(s)	121, 232, 385, 835
BceAI	ACGGC	1 cut(s)	1174
BciT130I	CCWGG	2 cut(s)	970, 1214
BclI	TGATCA	1 cut(s)	700
BcnI	CCSGG	1 cut(s)	199
BcoDI	GTCTC	3 cut(s)	612, 782, 1418
BcuI	ACTAGT	1 cut(s)	1082
BfaI	CTAG	4 cut(s)	281, 1034, 1083, 1199
BfmI	CTRYAG	1 cut(s)	1368
BfuAI	ACCTGC	2 cut(s)	676, 1007
BglI	GCCNNNNNGGC	1 cut(s)	1556
BisI	GCNGC	7 cut(s)	923, 932, 1042, 1129, 1209, 1572, 1657
BlsI	GCNGC	7 cut(s)	924, 933, 1043, 1130, 1210, 1573, 1658
BmcAI	AGTACT	1 cut(s)	1081
Bme1390I	CCNGG	3 cut(s)	199, 970, 1214
Bme18I	GGWCC	3 cut(s)	487, 989, 1445
BmgT120I	GGNCC	4 cut(s)	487, 860, 989, 1445
BmrFI	CCNGG	3 cut(s)	199, 970, 1214
BmrI	ACTGGG	1 cut(s)	728
BmsI	GCATC	3 cut(s)	823, 934, 1268
BmuI	ACTGGG	1 cut(s)	728
BoxI	GACNNNNGTC	1 cut(s)	1351
BpiI	GAAGAC	2 cut(s)	228, 807
Bpu14I	TTCGAA	1 cut(s)	351
BpuEI	CTTGAG	3 cut(s)	383, 512, 569
BpuMI	CCSGG	1 cut(s)	199
BsaBI	GATNNNNATC	1 cut(s)	837
BsaI	GGTCTC	2 cut(s)	782, 1418
BsaJI	CCNNGG	3 cut(s)	198, 611, 1212
BsaWI	WCCGGW	2 cut(s)	396, 1027
BsaXI	ACNNNNNCTCC	2 cut(s)	383, 413
Bsc4I	CCNNNNNNNGG	6 cut(s)	27, 86, 383, 888, 998, 1055
Bse118I	RCCGGY	1 cut(s)	396
Bse1I	ACTGG	6 cut(s)	723, 935, 1015, 1320, 1437, 1512
Bse21I	CCTNAGG	1 cut(s)	503
Bse8I	GATNNNNATC	1 cut(s)	837
BseBI	CCWGG	2 cut(s)	970, 1214
BseDI	CCNNGG	3 cut(s)	198, 611, 1212
BseGI	GGATG	2 cut(s)	177, 1007
BseJI	GATNNNNATC	1 cut(s)	837
BseLI	CCNNNNNNNGG	6 cut(s)	27, 86, 383, 888, 998, 1055
BseMII	CTCAG	5 cut(s)	63, 494, 1130, 1328, 1470
BseNI	ACTGG	6 cut(s)	723, 935, 1015, 1320, 1437, 1512
BseRI	GAGGAG	1 cut(s)	520
BseXI	GCAGC	7 cut(s)	934, 943, 1028, 1140, 1195, 1558, 1668
BsgI	GTGCAG	1 cut(s)	1035
Bsh1236I	CGCG	2 cut(s)	1296, 1418
BshFI	GGCC	1 cut(s)	862
BshTI	ACCGGT	1 cut(s)	396
BsiHKAI	GWGCWC	2 cut(s)	317, 1677
BsiSI	CCGG	3 cut(s)	198, 397, 1028
BslFI	GGGAC	1 cut(s)	1135
BslI	CCNNNNNNNGG	6 cut(s)	27, 86, 383, 888, 998, 1055
BsmAI	GTCTC	3 cut(s)	612, 782, 1418
BsmFI	GGGAC	1 cut(s)	1135
BsmI	GAATGC	2 cut(s)	516, 1474
BsnI	GGCC	1 cut(s)	862
Bso31I	GGTCTC	2 cut(s)	782, 1418
Bsp119I	TTCGAA	1 cut(s)	351
Bsp1286I	GDGCHC	2 cut(s)	317, 1677
Bsp1407I	TGTACA	1 cut(s)	1098
Bsp143I	GATC	9 cut(s)	319, 355, 653, 678, 700, 1112, 1134, 1275, 1297
BspACI	CCGC	4 cut(s)	110, 485, 514, 1448
BspANI	GGCC	1 cut(s)	862
BspCNI	CTCAG	5 cut(s)	64, 495, 1129, 1329, 1471
BspFNI	CGCG	2 cut(s)	1296, 1418
BspMI	ACCTGC	2 cut(s)	676, 1007
BspPI	GGATC	6 cut(s)	314, 350, 648, 686, 1120, 1142
BspT104I	TTCGAA	1 cut(s)	351
BspTNI	GGTCTC	2 cut(s)	782, 1418
BsrBI	CCGCTC	1 cut(s)	1450
BsrFI	RCCGGY	1 cut(s)	396
BsrGI	TGTACA	1 cut(s)	1098
BsrI	ACTGG	6 cut(s)	723, 935, 1015, 1320, 1437, 1512
BssAI	RCCGGY	1 cut(s)	396
BssECI	CCNNGG	3 cut(s)	198, 611, 1212
BssMI	GATC	9 cut(s)	319, 355, 653, 678, 700, 1112, 1134, 1275, 1297
BssNAI	GTATAC	1 cut(s)	1325
BssSI	CACGAG	1 cut(s)	212
BssT1I	CCWWGG	1 cut(s)	611
Bst1107I	GTATAC	1 cut(s)	1325
Bst2BI	CACGAG	1 cut(s)	212
Bst2UI	CCWGG	2 cut(s)	970, 1214
Bst4CI	ACNGT	1 cut(s)	371
Bst6I	CTCTTC	1 cut(s)	302
BstAUI	TGTACA	1 cut(s)	1098
BstBI	TTCGAA	1 cut(s)	351
BstC8I	GCNNGC	4 cut(s)	483, 516, 1046, 1452
BstDEI	CTNAG	7 cut(s)	9, 72, 503, 761, 1116, 1337, 1479
BstENI	CCTNNNNNAGG	1 cut(s)	996
BstF5I	GGATG	2 cut(s)	177, 1007
BstFNI	CGCG	2 cut(s)	1296, 1418
BstHHI	GCGC	2 cut(s)	1420, 1485
BstKTI	GATC	9 cut(s)	322, 358, 656, 681, 703, 1115, 1137, 1278, 1300
BstMAI	GTCTC	3 cut(s)	612, 782, 1418
BstMBI	GATC	9 cut(s)	319, 355, 653, 678, 700, 1112, 1134, 1275, 1297
BstMWI	GCNNNNNNNGC	9 cut(s)	14, 478, 524, 928, 931, 1214, 1447, 1480, 1556
BstNI	CCWGG	2 cut(s)	970, 1214
BstNSI	RCATGY	3 cut(s)	291, 607, 1681
BstPAI	GACNNNNGTC	1 cut(s)	1351
BstSCI	CCNGG	3 cut(s)	197, 968, 1212
BstSFI	CTRYAG	1 cut(s)	1368
BstUI	CGCG	2 cut(s)	1296, 1418
BstV1I	GCAGC	7 cut(s)	934, 943, 1028, 1140, 1195, 1558, 1668
BstV2I	GAAGAC	2 cut(s)	228, 807
BstX2I	RGATCY	4 cut(s)	355, 653, 1112, 1134
BstYI	RGATCY	4 cut(s)	355, 653, 1112, 1134
BstZ17I	GTATAC	1 cut(s)	1325
Bsu36I	CCTNAGG	1 cut(s)	503
BsuRI	GGCC	1 cut(s)	862
BtgZI	GCGATG	1 cut(s)	1248
BtsCI	GGATG	2 cut(s)	177, 1007
BtsIMutI	CAGTG	1 cut(s)	248
BveI	ACCTGC	2 cut(s)	676, 1007
Cac8I	GCNNGC	4 cut(s)	483, 516, 1046, 1452
CaiI	CAGNNNCTG	3 cut(s)	472, 502, 1432
CfoI	GCGC	2 cut(s)	1420, 1485
Cfr10I	RCCGGY	1 cut(s)	396
Cfr13I	GGNCC	4 cut(s)	487, 860, 989, 1445
CseI	GACGC	3 cut(s)	6, 1295, 1302
Csp6I	GTAC	3 cut(s)	394, 1080, 1099
CspAI	ACCGGT	1 cut(s)	396
CspCI	CAANNNNNGTGG	2 cut(s)	273, 308
CviAII	CATG	8 cut(s)	51, 288, 604, 773, 944, 1462, 1612, 1678
CviQI	GTAC	3 cut(s)	394, 1080, 1099
DdeI	CTNAG	7 cut(s)	9, 72, 503, 761, 1116, 1337, 1479
DpnI	GATC	9 cut(s)	321, 357, 655, 680, 702, 1114, 1136, 1277, 1299
DpnII	GATC	9 cut(s)	319, 355, 653, 678, 700, 1112, 1134, 1275, 1297
DraI	TTTAAA	1 cut(s)	997
DraIII	CACNNNGTG	1 cut(s)	1202
Eam1104I	CTCTTC	1 cut(s)	302
EarI	CTCTTC	1 cut(s)	302
EciI	GGCGGA	1 cut(s)	500
Eco130I	CCWWGG	1 cut(s)	611
Eco31I	GGTCTC	2 cut(s)	782, 1418
Eco32I	GATATC	1 cut(s)	278
Eco47I	GGWCC	3 cut(s)	487, 989, 1445
Eco57I	CTGAAG	2 cut(s)	1370, 1587
Eco81I	CCTNAGG	1 cut(s)	503
EcoNI	CCTNNNNNAGG	1 cut(s)	996
EcoO109I	RGGNCCY	1 cut(s)	860
EcoRI	GAATTC	1 cut(s)	90
EcoRII	CCWGG	2 cut(s)	968, 1212
EcoRV	GATATC	1 cut(s)	278
EcoT14I	CCWWGG	1 cut(s)	611
EcoT22I	ATGCAT	1 cut(s)	1613
ErhI	CCWWGG	1 cut(s)	611
FaeI	CATG	8 cut(s)	54, 291, 607, 776, 947, 1465, 1615, 1681
FalI	AAGNNNNNCTT	4 cut(s)	345, 377, 674, 706
FaqI	GGGAC	1 cut(s)	1135
FatI	CATG	8 cut(s)	50, 287, 603, 772, 943, 1461, 1611, 1677
FauI	CCCGC	2 cut(s)	103, 507
FauNDI	CATATG	1 cut(s)	1107
FbaI	TGATCA	1 cut(s)	700
FblI	GTMKAC	3 cut(s)	1193, 1324, 1383
Fnu4HI	GCNGC	7 cut(s)	923, 932, 1042, 1129, 1209, 1572, 1657
FokI	GGATG	2 cut(s)	184, 1014
Fsp4HI	GCNGC	7 cut(s)	923, 932, 1042, 1129, 1209, 1572, 1657
FspBI	CTAG	4 cut(s)	281, 1034, 1083, 1199
GlaI	GCGC	2 cut(s)	1419, 1484
GluI	GCNGC	7 cut(s)	923, 932, 1042, 1129, 1209, 1572, 1657
HaeIII	GGCC	1 cut(s)	862
HapII	CCGG	3 cut(s)	198, 397, 1028
HgaI	GACGC	3 cut(s)	6, 1295, 1302
HhaI	GCGC	2 cut(s)	1420, 1485
Hin1II	CATG	8 cut(s)	54, 291, 607, 776, 947, 1465, 1615, 1681
Hin6I	GCGC	2 cut(s)	1418, 1483
HinP1I	GCGC	2 cut(s)	1418, 1483
HincII	GTYRAC	3 cut(s)	190, 1179, 1314
HindII	GTYRAC	3 cut(s)	190, 1179, 1314
HinfI	GANTC	3 cut(s)	23, 55, 592
HpaI	GTTAAC	2 cut(s)	190, 1314
HpaII	CCGG	3 cut(s)	198, 397, 1028
HphI	GGTGA	2 cut(s)	214, 815
Hpy166II	GTNNAC	9 cut(s)	190, 823, 1101, 1179, 1194, 1314, 1325, 1384, 1666
Hpy188III	TCNNGA	3 cut(s)	362, 581, 1034
Hpy8I	GTNNAC	9 cut(s)	190, 823, 1101, 1179, 1194, 1314, 1325, 1384, 1666
Hpy99I	CGWCG	1 cut(s)	1673
HpyAV	CCTTC	4 cut(s)	201, 556, 1535, 1680
HpyCH4III	ACNGT	1 cut(s)	371
HpyCH4IV	ACGT	1 cut(s)	577
HpyF10VI	GCNNNNNNNGC	9 cut(s)	14, 478, 524, 928, 931, 1214, 1447, 1480, 1556
HpyF3I	CTNAG	7 cut(s)	9, 72, 503, 761, 1116, 1337, 1479
HpySE526I	ACGT	1 cut(s)	577
Hsp92II	CATG	8 cut(s)	54, 291, 607, 776, 947, 1465, 1615, 1681
HspAI	GCGC	2 cut(s)	1418, 1483
Ksp22I	TGATCA	1 cut(s)	700
KspAI	GTTAAC	2 cut(s)	190, 1314
Kzo9I	GATC	9 cut(s)	319, 355, 653, 678, 700, 1112, 1134, 1275, 1297
LmnI	GCTCC	3 cut(s)	320, 469, 1686
Lsp1109I	GCAGC	7 cut(s)	934, 943, 1028, 1140, 1195, 1558, 1668
LweI	GCATC	3 cut(s)	823, 934, 1268
MaeI	CTAG	4 cut(s)	281, 1034, 1083, 1199
MaeII	ACGT	1 cut(s)	577
MaeIII	GTNAC	1 cut(s)	462
MalI	GATC	9 cut(s)	321, 357, 655, 680, 702, 1114, 1136, 1277, 1299
MbiI	CCGCTC	1 cut(s)	1450
MboI	GATC	9 cut(s)	319, 355, 653, 678, 700, 1112, 1134, 1275, 1297
MboII	GAAGA	9 cut(s)	191, 233, 239, 319, 365, 415, 436, 601, 807
MfeI	CAATTG	1 cut(s)	458
MflI	RGATCY	4 cut(s)	355, 653, 1112, 1134
MhlI	GDGCHC	2 cut(s)	317, 1677
MlyI	GAGTC	2 cut(s)	32, 64
MmeI	TCCRAC	2 cut(s)	67, 664
Mph1103I	ATGCAT	1 cut(s)	1613
MroXI	GAANNNNTTC	1 cut(s)	952
MseI	TTAA	9 cut(s)	41, 122, 132, 189, 530, 894, 962, 996, 1313
MslI	CAYNNNNRTG	2 cut(s)	385, 1106
MspI	CCGG	3 cut(s)	198, 397, 1028
MspR9I	CCNGG	3 cut(s)	199, 970, 1214
MunI	CAATTG	1 cut(s)	458
Mva1269I	GAATGC	2 cut(s)	516, 1474
MvaI	CCWGG	2 cut(s)	970, 1214
MvnI	CGCG	2 cut(s)	1296, 1418
MwoI	GCNNNNNNNGC	9 cut(s)	14, 478, 524, 928, 931, 1214, 1447, 1480, 1556
NciI	CCSGG	1 cut(s)	199
NdeI	CATATG	1 cut(s)	1107
NdeII	GATC	9 cut(s)	319, 355, 653, 678, 700, 1112, 1134, 1275, 1297
NlaIII	CATG	8 cut(s)	54, 291, 607, 776, 947, 1465, 1615, 1681
NmuCI	GTSAC	1 cut(s)	462
NsiI	ATGCAT	1 cut(s)	1613
NspI	RCATGY	3 cut(s)	291, 607, 1681
NspV	TTCGAA	1 cut(s)	351
PaqCI	CACCTGC	1 cut(s)	1007
PciI	ACATGT	2 cut(s)	287, 603
PcsI	WCGNNNNNNNCGW	2 cut(s)	1271, 1293
PctI	GAATGC	2 cut(s)	516, 1474
PdmI	GAANNNNTTC	1 cut(s)	952
PfeI	GAWTC	1 cut(s)	592
PflMI	CCANNNNNTGG	2 cut(s)	383, 1055
PinAI	ACCGGT	1 cut(s)	396
PkrI	GCNGC	7 cut(s)	924, 933, 1043, 1130, 1210, 1573, 1658
PleI	GAGTC	2 cut(s)	31, 63
PpsI	GAGTC	2 cut(s)	31, 63
PscI	ACATGT	2 cut(s)	287, 603
PshAI	GACNNNNGTC	1 cut(s)	1351
Psp6I	CCWGG	2 cut(s)	968, 1212
PspGI	CCWGG	2 cut(s)	968, 1212
PspPI	GGNCC	4 cut(s)	487, 860, 989, 1445
PstNI	CAGNNNCTG	3 cut(s)	472, 502, 1432
PsuI	RGATCY	4 cut(s)	355, 653, 1112, 1134
RsaI	GTAC	3 cut(s)	395, 1081, 1100
RsaNI	GTAC	3 cut(s)	394, 1080, 1099
RseI	CAYNNNNRTG	2 cut(s)	385, 1106
SaqAI	TTAA	9 cut(s)	41, 122, 132, 189, 530, 894, 962, 996, 1313
SatI	GCNGC	7 cut(s)	923, 932, 1042, 1129, 1209, 1572, 1657
Sau3AI	GATC	9 cut(s)	319, 355, 653, 678, 700, 1112, 1134, 1275, 1297
Sau96I	GGNCC	4 cut(s)	487, 860, 989, 1445
ScaI	AGTACT	1 cut(s)	1081
SchI	GAGTC	2 cut(s)	32, 64
ScrFI	CCNGG	3 cut(s)	199, 970, 1214
SduI	GDGCHC	2 cut(s)	317, 1677
SfaNI	GCATC	3 cut(s)	823, 934, 1268
SfcI	CTRYAG	1 cut(s)	1368
SfuI	TTCGAA	1 cut(s)	351
SinI	GGWCC	3 cut(s)	487, 989, 1445
SmiMI	CAYNNNNRTG	2 cut(s)	385, 1106
SmlI	CTYRAG	3 cut(s)	362, 491, 548
SmoI	CTYRAG	3 cut(s)	362, 491, 548
SpeI	ACTAGT	1 cut(s)	1082
SsiI	CCGC	4 cut(s)	110, 485, 514, 1448
SspI	AATATT	1 cut(s)	1489
SspMI	CTAG	4 cut(s)	281, 1034, 1083, 1199
StyD4I	CCNGG	3 cut(s)	197, 968, 1212
StyI	CCWWGG	1 cut(s)	611
TaaI	ACNGT	1 cut(s)	371
TaiI	ACGT	1 cut(s)	580
TaqI	TCGA	3 cut(s)	351, 1274, 1692
TatI	WGTACW	2 cut(s)	1079, 1098
TfiI	GAWTC	1 cut(s)	592
Tru1I	TTAA	9 cut(s)	41, 122, 132, 189, 530, 894, 962, 996, 1313
Tru9I	TTAA	9 cut(s)	41, 122, 132, 189, 530, 894, 962, 996, 1313
TscAI	CASTG	1 cut(s)	255
TseFI	GTSAC	1 cut(s)	462
TseI	GCWGC	7 cut(s)	922, 931, 1041, 1128, 1208, 1571, 1656
Tsp45I	GTSAC	1 cut(s)	462
TspDTI	ATGAA	4 cut(s)	437, 1103, 1508, 1635
TspRI	CASTG	1 cut(s)	255
Van91I	CCANNNNNTGG	2 cut(s)	383, 1055
VpaK11BI	GGWCC	3 cut(s)	487, 989, 1445
XagI	CCTNNNNNAGG	1 cut(s)	996
XapI	RAATTY	3 cut(s)	90, 342, 752
XbaI	TCTAGA	1 cut(s)	1033
XceI	RCATGY	3 cut(s)	291, 607, 1681
XcmI	CCANNNNNNNNNTGG	1 cut(s)	384
XmiI	GTMKAC	3 cut(s)	1193, 1324, 1383
XmnI	GAANNNNTTC	1 cut(s)	952
XspI	CTAG	4 cut(s)	281, 1034, 1083, 1199
ZrmI	AGTACT	1 cut(s)	1081
Zsp2I	ATGCAT	1 cut(s)	1613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.