Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD07G1057000.v1.1 |
| pyrus_communis | pycom13g04470 |
| rosa_laevigata | RLG00000019012 |
| rosa_rugosa | Rorug02G0013500 Rorug03G0224600 |
| rosa_samantha | Rh5DG151200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 999 |
| AatII | GACGTC | 1 cut(s) | 1696 |
| Acc65I | GGTACC | 1 cut(s) | 1365 |
| AccB1I | GGYRCC | 2 cut(s) | 1365, 1388 |
| AccBSI | CCGCTC | 2 cut(s) | 513, 1493 |
| AccII | CGCG | 2 cut(s) | 1063, 1657 |
| AccIII | TCCGGA | 1 cut(s) | 400 |
| AciI | CCGC | 8 cut(s) | 513, 788, 1063, 1449, 1491, 1531, 1615, 1630 |
| AclWI | GGATC | 3 cut(s) | 38, 881, 1586 |
| AcoI | YGGCCR | 1 cut(s) | 1631 |
| AcsI | RAATTY | 3 cut(s) | 124, 142, 1598 |
| AcuI | CTGAAG | 1 cut(s) | 1102 |
| AcvI | CACGTG | 1 cut(s) | 1269 |
| AcyI | GRCGYC | 2 cut(s) | 1389, 1693 |
| AfaI | GTAC | 5 cut(s) | 90, 1265, 1367, 1385, 1547 |
| AfeI | AGCGCT | 1 cut(s) | 1197 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1099 |
| AflIII | ACRYGT | 1 cut(s) | 1266 |
| AgsI | TTSAA | 9 cut(s) | 16, 118, 147, 776, 1150, 1216, 1353, 1436, 1526 |
| AjiI | CACGTC | 1 cut(s) | 727 |
| AjnI | CCWGG | 2 cut(s) | 1047, 1440 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 280, 312, 735, 767 |
| AluBI | AGCT | 4 cut(s) | 274, 354, 499, 1122 |
| AluI | AGCT | 4 cut(s) | 274, 354, 499, 1122 |
| Alw26I | GTCTC | 5 cut(s) | 317, 402, 842, 996, 1076 |
| AlwI | GGATC | 3 cut(s) | 38, 881, 1586 |
| Ama87I | CYCGRG | 1 cut(s) | 1250 |
| Aor13HI | TCCGGA | 1 cut(s) | 400 |
| Aor51HI | AGCGCT | 1 cut(s) | 1197 |
| AoxI | GGCC | 6 cut(s) | 135, 438, 1209, 1443, 1631, 1671 |
| ApeKI | GCWGC | 2 cut(s) | 630, 1664 |
| ApoI | RAATTY | 3 cut(s) | 124, 142, 1598 |
| Asp718I | GGTACC | 1 cut(s) | 1365 |
| AspLEI | GCGC | 4 cut(s) | 1063, 1198, 1391, 1657 |
| AspS9I | GGNCC | 3 cut(s) | 66, 1444, 1671 |
| AsuHPI | GGTGA | 4 cut(s) | 633, 722, 1312, 1389 |
| AvaI | CYCGRG | 1 cut(s) | 1250 |
| AvaII | GGWCC | 1 cut(s) | 66 |
| BaeGI | GKGCMC | 1 cut(s) | 1583 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1349, 1382 |
| BanI | GGYRCC | 2 cut(s) | 1365, 1388 |
| BbrPI | CACGTG | 1 cut(s) | 1269 |
| BbsI | GAAGAC | 2 cut(s) | 105, 922 |
| BbvCI | CCTCAGC | 1 cut(s) | 62 |
| BbvI | GCAGC | 2 cut(s) | 617, 1676 |
| BccI | CCATC | 8 cut(s) | 313, 338, 449, 539, 707, 1134, 1291, 1316 |
| BceAI | ACGGC | 5 cut(s) | 618, 1151, 1240, 1402, 1668 |
| BciT130I | CCWGG | 2 cut(s) | 1049, 1442 |
| BciVI | GTATCC | 1 cut(s) | 1560 |
| BclI | TGATCA | 1 cut(s) | 537 |
| BcoDI | GTCTC | 5 cut(s) | 317, 402, 842, 996, 1076 |
| BfaI | CTAG | 2 cut(s) | 666, 701 |
| BfoI | RGCGCY | 2 cut(s) | 1199, 1392 |
| BfuI | GTATCC | 1 cut(s) | 1560 |
| BglII | AGATCT | 1 cut(s) | 1622 |
| BisI | GCNGC | 5 cut(s) | 631, 1491, 1616, 1631, 1665 |
| BlpI | GCTNAGC | 1 cut(s) | 495 |
| BlsI | GCNGC | 5 cut(s) | 632, 1492, 1617, 1632, 1666 |
| Bme1390I | CCNGG | 2 cut(s) | 1049, 1442 |
| Bme18I | GGWCC | 1 cut(s) | 66 |
| BmeT110I | CYCGRG | 1 cut(s) | 1250 |
| BmgBI | CACGTC | 1 cut(s) | 727 |
| BmgT120I | GGNCC | 3 cut(s) | 66, 1444, 1671 |
| BmiI | GGNNCC | 6 cut(s) | 255, 718, 1367, 1390, 1446, 1466 |
| BmrFI | CCNGG | 2 cut(s) | 1049, 1442 |
| BmrI | ACTGGG | 1 cut(s) | 696 |
| BmsI | GCATC | 4 cut(s) | 43, 461, 515, 626 |
| BmuI | ACTGGG | 1 cut(s) | 696 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1692 |
| BpiI | GAAGAC | 2 cut(s) | 105, 922 |
| BpmI | CTGGAG | 1 cut(s) | 330 |
| Bpu10I | CCTNAGC | 1 cut(s) | 62 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 495 |
| BpuEI | CTTGAG | 2 cut(s) | 113, 1058 |
| Bsa29I | ATCGAT | 2 cut(s) | 33, 201 |
| BsaAI | YACGTR | 1 cut(s) | 1269 |
| BsaBI | GATNNNNATC | 1 cut(s) | 197 |
| BsaHI | GRCGYC | 2 cut(s) | 1389, 1693 |
| BsaJI | CCNNGG | 4 cut(s) | 26, 447, 850, 1440 |
| BsaWI | WCCGGW | 2 cut(s) | 400, 1021 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1099 |
| Bse1I | ACTGG | 5 cut(s) | 313, 663, 675, 691, 986 |
| Bse8I | GATNNNNATC | 1 cut(s) | 197 |
| BseAI | TCCGGA | 1 cut(s) | 400 |
| BseBI | CCWGG | 2 cut(s) | 1049, 1442 |
| BseCI | ATCGAT | 2 cut(s) | 33, 201 |
| BseDI | CCNNGG | 4 cut(s) | 26, 447, 850, 1440 |
| BseGI | GGATG | 5 cut(s) | 580, 950, 1057, 1145, 1149 |
| BseJI | GATNNNNATC | 1 cut(s) | 197 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1099 |
| BseMII | CTCAG | 4 cut(s) | 53, 509, 513, 1530 |
| BseNI | ACTGG | 5 cut(s) | 313, 663, 675, 691, 986 |
| BseRI | GAGGAG | 1 cut(s) | 1457 |
| BseSI | GKGCMC | 1 cut(s) | 1583 |
| BseXI | GCAGC | 2 cut(s) | 617, 1676 |
| BsgI | GTGCAG | 2 cut(s) | 174, 1171 |
| Bsh1236I | CGCG | 2 cut(s) | 1063, 1657 |
| Bsh1285I | CGRYCG | 1 cut(s) | 708 |
| BshFI | GGCC | 6 cut(s) | 137, 440, 1211, 1445, 1633, 1673 |
| BshNI | GGYRCC | 2 cut(s) | 1365, 1388 |
| BshVI | ATCGAT | 2 cut(s) | 33, 201 |
| BsiEI | CGRYCG | 1 cut(s) | 708 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1250 |
| BsiSI | CCGG | 3 cut(s) | 401, 1022, 1236 |
| BsiWI | CGTACG | 1 cut(s) | 1383 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1099 |
| BsmAI | GTCTC | 5 cut(s) | 317, 402, 842, 996, 1076 |
| BsmBI | CGTCTC | 1 cut(s) | 842 |
| BsmI | GAATGC | 1 cut(s) | 786 |
| BsnI | GGCC | 6 cut(s) | 137, 440, 1211, 1445, 1633, 1673 |
| BsoBI | CYCGRG | 1 cut(s) | 1250 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1583 |
| Bsp13I | TCCGGA | 1 cut(s) | 400 |
| Bsp1407I | TGTACA | 1 cut(s) | 1263 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 495 |
| Bsp19I | CCATGG | 2 cut(s) | 26, 850 |
| BspACI | CCGC | 8 cut(s) | 513, 788, 1063, 1449, 1491, 1531, 1615, 1630 |
| BspANI | GGCC | 6 cut(s) | 137, 440, 1211, 1445, 1633, 1673 |
| BspCNI | CTCAG | 4 cut(s) | 54, 508, 514, 1529 |
| BspDI | ATCGAT | 2 cut(s) | 33, 201 |
| BspEI | TCCGGA | 1 cut(s) | 400 |
| BspFNI | CGCG | 2 cut(s) | 1063, 1657 |
| BspLI | GGNNCC | 6 cut(s) | 255, 718, 1367, 1390, 1446, 1466 |
| BspPI | GGATC | 3 cut(s) | 38, 881, 1586 |
| BspT107I | GGYRCC | 2 cut(s) | 1365, 1388 |
| BsrBI | CCGCTC | 2 cut(s) | 513, 1493 |
| BsrGI | TGTACA | 1 cut(s) | 1263 |
| BsrI | ACTGG | 5 cut(s) | 313, 663, 675, 691, 986 |
| BssECI | CCNNGG | 4 cut(s) | 26, 447, 850, 1440 |
| BssNI | GRCGYC | 2 cut(s) | 1389, 1693 |
| BssT1I | CCWWGG | 3 cut(s) | 26, 447, 850 |
| Bst2UI | CCWGG | 2 cut(s) | 1049, 1442 |
| Bst4CI | ACNGT | 7 cut(s) | 169, 226, 928, 1563, 1642, 1679, 1703 |
| Bst6I | CTCTTC | 2 cut(s) | 1121, 1343 |
| BstACI | GRCGYC | 2 cut(s) | 1389, 1693 |
| BstAUI | TGTACA | 1 cut(s) | 1263 |
| BstBAI | YACGTR | 1 cut(s) | 1269 |
| BstC8I | GCNNGC | 8 cut(s) | 276, 356, 558, 734, 786, 969, 1124, 1209 |
| BstDEI | CTNAG | 5 cut(s) | 62, 359, 495, 522, 1516 |
| BstDSI | CCRYGG | 2 cut(s) | 26, 850 |
| BstF5I | GGATG | 5 cut(s) | 580, 950, 1057, 1145, 1149 |
| BstFNI | CGCG | 2 cut(s) | 1063, 1657 |
| BstH2I | RGCGCY | 2 cut(s) | 1199, 1392 |
| BstHHI | GCGC | 4 cut(s) | 1063, 1198, 1391, 1657 |
| BstMAI | GTCTC | 5 cut(s) | 317, 402, 842, 996, 1076 |
| BstMCI | CGRYCG | 1 cut(s) | 708 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 841, 1204, 1388, 1578, 1661, 1670 |
| BstNI | CCWGG | 2 cut(s) | 1049, 1442 |
| BstNSI | RCATGY | 2 cut(s) | 351, 736 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1692 |
| BstSCI | CCNGG | 2 cut(s) | 1047, 1440 |
| BstSLI | GKGCMC | 1 cut(s) | 1583 |
| BstUI | CGCG | 2 cut(s) | 1063, 1657 |
| BstV1I | GCAGC | 2 cut(s) | 617, 1676 |
| BstV2I | GAAGAC | 2 cut(s) | 105, 922 |
| BstX2I | RGATCY | 2 cut(s) | 873, 1622 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 727 |
| BstYI | RGATCY | 2 cut(s) | 873, 1622 |
| Bsu15I | ATCGAT | 2 cut(s) | 33, 201 |
| BsuI | GTATCC | 1 cut(s) | 1560 |
| BsuRI | GGCC | 6 cut(s) | 137, 440, 1211, 1445, 1633, 1673 |
| BsuTUI | ATCGAT | 2 cut(s) | 33, 201 |
| BtgI | CCRYGG | 2 cut(s) | 26, 850 |
| BtgZI | GCGATG | 2 cut(s) | 427, 895 |
| BtrI | CACGTC | 1 cut(s) | 727 |
| BtsCI | GGATG | 5 cut(s) | 580, 950, 1057, 1145, 1149 |
| BtsI | GCAGTG | 1 cut(s) | 1413 |
| BtsIMutI | CAGTG | 5 cut(s) | 174, 656, 924, 1413, 1568 |
| Cac8I | GCNNGC | 8 cut(s) | 276, 356, 558, 734, 786, 969, 1124, 1209 |
| CfoI | GCGC | 4 cut(s) | 1063, 1198, 1391, 1657 |
| Cfr13I | GGNCC | 3 cut(s) | 66, 1444, 1671 |
| ClaI | ATCGAT | 2 cut(s) | 33, 201 |
| CseI | GACGC | 1 cut(s) | 824 |
| Csp6I | GTAC | 5 cut(s) | 89, 1264, 1366, 1384, 1546 |
| CviAII | CATG | 7 cut(s) | 27, 348, 733, 793, 851, 1393, 1609 |
| CviQI | GTAC | 5 cut(s) | 89, 1264, 1366, 1384, 1546 |
| DdeI | CTNAG | 5 cut(s) | 62, 359, 495, 522, 1516 |
| DinI | GGCGCC | 1 cut(s) | 1390 |
| DraI | TTTAAA | 1 cut(s) | 597 |
| EaeI | YGGCCR | 1 cut(s) | 1631 |
| Eam1104I | CTCTTC | 2 cut(s) | 1121, 1343 |
| EarI | CTCTTC | 2 cut(s) | 1121, 1343 |
| Eco130I | CCWWGG | 3 cut(s) | 26, 447, 850 |
| Eco147I | AGGCCT | 1 cut(s) | 1211 |
| Eco47I | GGWCC | 1 cut(s) | 66 |
| Eco47III | AGCGCT | 1 cut(s) | 1197 |
| Eco57I | CTGAAG | 1 cut(s) | 1102 |
| Eco72I | CACGTG | 1 cut(s) | 1269 |
| Eco88I | CYCGRG | 1 cut(s) | 1250 |
| EcoO109I | RGGNCCY | 1 cut(s) | 66 |
| EcoRI | GAATTC | 1 cut(s) | 142 |
| EcoRII | CCWGG | 2 cut(s) | 1047, 1440 |
| EcoT14I | CCWWGG | 3 cut(s) | 26, 447, 850 |
| EgeI | GGCGCC | 1 cut(s) | 1390 |
| EheI | GGCGCC | 1 cut(s) | 1390 |
| ErhI | CCWWGG | 3 cut(s) | 26, 447, 850 |
| Esp3I | CGTCTC | 1 cut(s) | 842 |
| FaeI | CATG | 7 cut(s) | 30, 351, 736, 796, 854, 1396, 1612 |
| FatI | CATG | 7 cut(s) | 26, 347, 732, 792, 850, 1392, 1608 |
| FauI | CCCGC | 2 cut(s) | 506, 1456 |
| FbaI | TGATCA | 1 cut(s) | 537 |
| Fnu4HI | GCNGC | 5 cut(s) | 631, 1491, 1616, 1631, 1665 |
| FokI | GGATG | 5 cut(s) | 587, 937, 1064, 1152, 1156 |
| Fsp4HI | GCNGC | 5 cut(s) | 631, 1491, 1616, 1631, 1665 |
| FspBI | CTAG | 2 cut(s) | 666, 701 |
| GlaI | GCGC | 4 cut(s) | 1062, 1197, 1390, 1656 |
| GluI | GCNGC | 5 cut(s) | 631, 1491, 1616, 1631, 1665 |
| GsuI | CTGGAG | 1 cut(s) | 330 |
| HaeII | RGCGCY | 2 cut(s) | 1199, 1392 |
| HaeIII | GGCC | 6 cut(s) | 137, 440, 1211, 1445, 1633, 1673 |
| HapII | CCGG | 3 cut(s) | 401, 1022, 1236 |
| HgaI | GACGC | 1 cut(s) | 824 |
| HhaI | GCGC | 4 cut(s) | 1063, 1198, 1391, 1657 |
| Hin1I | GRCGYC | 2 cut(s) | 1389, 1693 |
| Hin1II | CATG | 7 cut(s) | 30, 351, 736, 796, 854, 1396, 1612 |
| Hin6I | GCGC | 4 cut(s) | 1061, 1196, 1389, 1655 |
| HinP1I | GCGC | 4 cut(s) | 1061, 1196, 1389, 1655 |
| HincII | GTYRAC | 1 cut(s) | 1158 |
| HindII | GTYRAC | 1 cut(s) | 1158 |
| HindIII | AAGCTT | 1 cut(s) | 272 |
| HinfI | GANTC | 1 cut(s) | 395 |
| HpaI | GTTAAC | 1 cut(s) | 1158 |
| HpaII | CCGG | 3 cut(s) | 401, 1022, 1236 |
| HphI | GGTGA | 4 cut(s) | 633, 722, 1312, 1389 |
| Hpy166II | GTNNAC | 4 cut(s) | 89, 1158, 1266, 1288 |
| Hpy188I | TCNGA | 4 cut(s) | 9, 477, 523, 1139 |
| Hpy188III | TCNNGA | 8 cut(s) | 161, 257, 401, 470, 681, 960, 1043, 1595 |
| Hpy8I | GTNNAC | 4 cut(s) | 89, 1158, 1266, 1288 |
| Hpy99I | CGWCG | 1 cut(s) | 1698 |
| HpyAV | CCTTC | 5 cut(s) | 646, 770, 1091, 1222, 1464 |
| HpyCH4III | ACNGT | 7 cut(s) | 169, 226, 928, 1563, 1642, 1679, 1703 |
| HpyCH4IV | ACGT | 4 cut(s) | 726, 1002, 1268, 1693 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 841, 1204, 1388, 1578, 1661, 1670 |
| HpyF3I | CTNAG | 5 cut(s) | 62, 359, 495, 522, 1516 |
| HpySE526I | ACGT | 4 cut(s) | 726, 1002, 1268, 1693 |
| Hsp92I | GRCGYC | 2 cut(s) | 1389, 1693 |
| Hsp92II | CATG | 7 cut(s) | 30, 351, 736, 796, 854, 1396, 1612 |
| HspAI | GCGC | 4 cut(s) | 1061, 1196, 1389, 1655 |
| KasI | GGCGCC | 1 cut(s) | 1388 |
| Kpn2I | TCCGGA | 1 cut(s) | 400 |
| KpnI | GGTACC | 1 cut(s) | 1369 |
| Ksp22I | TGATCA | 1 cut(s) | 537 |
| KspAI | GTTAAC | 1 cut(s) | 1158 |
| LmnI | GCTCC | 4 cut(s) | 716, 741, 832, 1470 |
| Lsp1109I | GCAGC | 2 cut(s) | 617, 1676 |
| LweI | GCATC | 4 cut(s) | 43, 461, 515, 626 |
| MaeI | CTAG | 2 cut(s) | 666, 701 |
| MaeII | ACGT | 4 cut(s) | 726, 1002, 1268, 1693 |
| MaeIII | GTNAC | 7 cut(s) | 181, 661, 863, 1313, 1395, 1604, 1697 |
| MbiI | CCGCTC | 2 cut(s) | 513, 1493 |
| MfeI | CAATTG | 2 cut(s) | 606, 1353 |
| MflI | RGATCY | 2 cut(s) | 873, 1622 |
| MhlI | GDGCHC | 1 cut(s) | 1583 |
| Mly113I | GGCGCC | 1 cut(s) | 1389 |
| MlyI | GAGTC | 1 cut(s) | 404 |
| MmeI | TCCRAC | 2 cut(s) | 396, 739 |
| MroI | TCCGGA | 1 cut(s) | 400 |
| MseI | TTAA | 5 cut(s) | 291, 408, 596, 1157, 1325 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1526 |
| MspA1I | CMGCKG | 1 cut(s) | 1122 |
| MspI | CCGG | 3 cut(s) | 401, 1022, 1236 |
| MspR9I | CCNGG | 2 cut(s) | 1049, 1442 |
| MunI | CAATTG | 2 cut(s) | 606, 1353 |
| Mva1269I | GAATGC | 1 cut(s) | 786 |
| MvaI | CCWGG | 2 cut(s) | 1049, 1442 |
| MvnI | CGCG | 2 cut(s) | 1063, 1657 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 841, 1204, 1388, 1578, 1661, 1670 |
| NarI | GGCGCC | 1 cut(s) | 1389 |
| NcoI | CCATGG | 2 cut(s) | 26, 850 |
| NlaIII | CATG | 7 cut(s) | 30, 351, 736, 796, 854, 1396, 1612 |
| NlaIV | GGNNCC | 6 cut(s) | 255, 718, 1367, 1390, 1446, 1466 |
| NmuCI | GTSAC | 3 cut(s) | 661, 1395, 1604 |
| NspI | RCATGY | 2 cut(s) | 351, 736 |
| PaeI | GCATGC | 1 cut(s) | 736 |
| PceI | AGGCCT | 1 cut(s) | 1211 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1265, 1699 |
| PctI | GAATGC | 1 cut(s) | 786 |
| Pfl23II | CGTACG | 1 cut(s) | 1383 |
| PkrI | GCNGC | 5 cut(s) | 632, 1492, 1617, 1632, 1666 |
| Ple19I | CGATCG | 1 cut(s) | 708 |
| PleI | GAGTC | 1 cut(s) | 403 |
| PluTI | GGCGCC | 1 cut(s) | 1392 |
| PmaCI | CACGTG | 1 cut(s) | 1269 |
| PmlI | CACGTG | 1 cut(s) | 1269 |
| PpsI | GAGTC | 1 cut(s) | 403 |
| Ppu21I | YACGTR | 1 cut(s) | 1269 |
| PpuMI | RGGWCCY | 1 cut(s) | 66 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1692 |
| PsiI | TTATAA | 1 cut(s) | 999 |
| Psp5II | RGGWCCY | 1 cut(s) | 66 |
| Psp6I | CCWGG | 2 cut(s) | 1047, 1440 |
| PspCI | CACGTG | 1 cut(s) | 1269 |
| PspGI | CCWGG | 2 cut(s) | 1047, 1440 |
| PspLI | CGTACG | 1 cut(s) | 1383 |
| PspN4I | GGNNCC | 6 cut(s) | 255, 718, 1367, 1390, 1446, 1466 |
| PspPI | GGNCC | 3 cut(s) | 66, 1444, 1671 |
| PspPPI | RGGWCCY | 1 cut(s) | 66 |
| PsuI | RGATCY | 2 cut(s) | 873, 1622 |
| PvuI | CGATCG | 1 cut(s) | 708 |
| PvuII | CAGCTG | 1 cut(s) | 1122 |
| RsaI | GTAC | 5 cut(s) | 90, 1265, 1367, 1385, 1547 |
| RsaNI | GTAC | 5 cut(s) | 89, 1264, 1366, 1384, 1546 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1526 |
| SaqAI | TTAA | 5 cut(s) | 291, 408, 596, 1157, 1325 |
| SatI | GCNGC | 5 cut(s) | 631, 1491, 1616, 1631, 1665 |
| Sau96I | GGNCC | 3 cut(s) | 66, 1444, 1671 |
| SchI | GAGTC | 1 cut(s) | 404 |
| ScrFI | CCNGG | 2 cut(s) | 1049, 1442 |
| SduI | GDGCHC | 1 cut(s) | 1583 |
| SfaNI | GCATC | 4 cut(s) | 43, 461, 515, 626 |
| SfoI | GGCGCC | 1 cut(s) | 1390 |
| SinI | GGWCC | 1 cut(s) | 66 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1526 |
| SmlI | CTYRAG | 2 cut(s) | 92, 1073 |
| SmoI | CTYRAG | 2 cut(s) | 92, 1073 |
| SphI | GCATGC | 1 cut(s) | 736 |
| SseBI | AGGCCT | 1 cut(s) | 1211 |
| SsiI | CCGC | 8 cut(s) | 513, 788, 1063, 1449, 1491, 1531, 1615, 1630 |
| SspDI | GGCGCC | 1 cut(s) | 1388 |
| SspI | AATATT | 2 cut(s) | 337, 1134 |
| SspMI | CTAG | 2 cut(s) | 666, 701 |
| StuI | AGGCCT | 1 cut(s) | 1211 |
| StyD4I | CCNGG | 2 cut(s) | 1047, 1440 |
| StyI | CCWWGG | 3 cut(s) | 26, 447, 850 |
| TaaI | ACNGT | 7 cut(s) | 169, 226, 928, 1563, 1642, 1679, 1703 |
| TaiI | ACGT | 4 cut(s) | 729, 1005, 1271, 1696 |
| TaqI | TCGA | 6 cut(s) | 33, 201, 471, 509, 823, 1044 |
| TatI | WGTACW | 2 cut(s) | 88, 1263 |
| TauI | GCSGC | 3 cut(s) | 1493, 1618, 1633 |
| Tru1I | TTAA | 5 cut(s) | 291, 408, 596, 1157, 1325 |
| Tru9I | TTAA | 5 cut(s) | 291, 408, 596, 1157, 1325 |
| TscAI | CASTG | 5 cut(s) | 174, 663, 931, 1420, 1568 |
| TseFI | GTSAC | 3 cut(s) | 661, 1395, 1604 |
| TseI | GCWGC | 2 cut(s) | 630, 1664 |
| Tsp45I | GTSAC | 3 cut(s) | 661, 1395, 1604 |
| TspDTI | ATGAA | 5 cut(s) | 192, 386, 627, 1330, 1420 |
| TspGWI | ACGGA | 1 cut(s) | 1205 |
| TspRI | CASTG | 5 cut(s) | 174, 663, 931, 1420, 1568 |
| VpaK11BI | GGWCC | 1 cut(s) | 66 |
| XapI | RAATTY | 3 cut(s) | 124, 142, 1598 |
| XceI | RCATGY | 2 cut(s) | 351, 736 |
| XspI | CTAG | 2 cut(s) | 666, 701 |
| ZraI | GACGTC | 1 cut(s) | 1694 |