Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0020401

Physical Location & Seq

Genomic Coordinates Forward (+)

44756143 .. 44757245

Gene Structure 1103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019012

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGATCAAGTTGGAAAGAGATCCACATGCAGCATTTGCACTAGTTATTGATGGAAAAACTTTAGCCTATGCTTTGGATGCTGATATGAAGCATCTATGCTTGGAATTAGCTATTGATTGTGCATCTATCATATGTTGTCGTGTCTCCCCTAAGCAGAAGGCATTGGTAACAAGACTAGTAAGACAAGGAACTGGGAAGACTACATTAGCAATTGGTGATGGTGCAAATGATGTTGGAATGATTCAAGAAGATGACATTGGTATTGGAATCAGTGGCGTCGAAGGTATGCAGGCTATGATGGCTAGTGACTTTGCTATTGCCGAGTTTTGGTTTTTGGAGAGACTTTTGGTTGTCCATGGACATTGGTGCTATAAAAGGATTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006996 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031984 GO:0033036 GO:0034204 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045332 GO:0048193 GO:0048194 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

129

Amino Acids

13.98

Weight (kDa)

5.73

Isoelectric Point (pI)

16.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PhoLip_ATPase_C	PF16212	100 - 128	4e-12	Phospholipid-translocating P-type ATPase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020401)

Species	Orthologous Gene IDs
malus_domestica	MD07G1057000.v1.1
pyrus_communis	pycom13g04470
rosa_laevigata	RLG00000019012
rosa_rugosa	Rorug02G0013500 Rorug03G0224600
rosa_samantha	Rh5DG151200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	14
AcyI	GRCGYC	1 cut(s)	276
AfiI	CCNNNNNNNGG	1 cut(s)	327
AgsI	TTSAA	1 cut(s)	245
AhlI	ACTAGT	2 cut(s)	40, 175
AjuI	GAANNNNNNNTTGG	2 cut(s)	240, 272
AluBI	AGCT	1 cut(s)	110
AluI	AGCT	1 cut(s)	110
Alw26I	GTCTC	2 cut(s)	148, 334
AlwI	GGATC	1 cut(s)	14
ApeKI	GCWGC	1 cut(s)	29
AsuHPI	GGTGA	1 cut(s)	227
BbsI	GAAGAC	1 cut(s)	203
BbvI	GCAGC	1 cut(s)	41
BccI	CCATC	3 cut(s)	44, 212, 292
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	2 cut(s)	148, 334
BcuI	ACTAGT	2 cut(s)	40, 175
BfaI	CTAG	3 cut(s)	41, 176, 303
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
BmrI	ACTGGG	1 cut(s)	201
BmsI	GCATC	3 cut(s)	67, 100, 131
BmuI	ACTGGG	1 cut(s)	201
BpiI	GAAGAC	1 cut(s)	203
Bpu10I	CCTNAGC	1 cut(s)	150
BsaHI	GRCGYC	1 cut(s)	276
BsaJI	CCNNGG	1 cut(s)	355
Bsc4I	CCNNNNNNNGG	1 cut(s)	327
Bse1I	ACTGG	1 cut(s)	196
BseDI	CCNNGG	1 cut(s)	355
BseGI	GGATG	1 cut(s)	82
BseLI	CCNNNNNNNGG	1 cut(s)	327
BseNI	ACTGG	1 cut(s)	196
BseXI	GCAGC	1 cut(s)	41
BslI	CCNNNNNNNGG	1 cut(s)	327
BsmAI	GTCTC	2 cut(s)	148, 334
Bsp143I	GATC	2 cut(s)	3, 19
Bsp19I	CCATGG	1 cut(s)	355
BspPI	GGATC	1 cut(s)	14
BsrI	ACTGG	1 cut(s)	196
BssECI	CCNNGG	1 cut(s)	355
BssMI	GATC	2 cut(s)	3, 19
BssNI	GRCGYC	1 cut(s)	276
BssT1I	CCWWGG	1 cut(s)	355
BstACI	GRCGYC	1 cut(s)	276
BstAPI	GCANNNNNTGC	1 cut(s)	35
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	2 cut(s)	150, 384
BstDSI	CCRYGG	1 cut(s)	355
BstF5I	GGATG	1 cut(s)	82
BstKTI	GATC	2 cut(s)	6, 22
BstMAI	GTCTC	2 cut(s)	148, 334
BstMBI	GATC	2 cut(s)	3, 19
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 77, 299
BstNSI	RCATGY	1 cut(s)	29
BstV1I	GCAGC	1 cut(s)	41
BstV2I	GAAGAC	1 cut(s)	203
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
BtgI	CCRYGG	1 cut(s)	355
BtsCI	GGATG	1 cut(s)	82
BtsIMutI	CAGTG	1 cut(s)	277
Cac8I	GCNNGC	1 cut(s)	291
CseI	GACGC	1 cut(s)	265
CviAII	CATG	2 cut(s)	26, 356
CviJI	RGCY	4 cut(s)	65, 110, 293, 302
CviKI_1	RGCY	4 cut(s)	65, 110, 293, 302
DdeI	CTNAG	2 cut(s)	150, 384
DpnI	GATC	2 cut(s)	5, 21
DpnII	GATC	2 cut(s)	3, 19
Eco130I	CCWWGG	1 cut(s)	355
EcoT14I	CCWWGG	1 cut(s)	355
ErhI	CCWWGG	1 cut(s)	355
FaeI	CATG	2 cut(s)	29, 359
FalI	AAGNNNNNCTT	1 cut(s)	367
FatI	CATG	2 cut(s)	25, 355
FauNDI	CATATG	1 cut(s)	131
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	30
FokI	GGATG	1 cut(s)	89
Fsp4HI	GCNGC	1 cut(s)	30
FspBI	CTAG	3 cut(s)	41, 176, 303
GluI	GCNGC	1 cut(s)	30
HgaI	GACGC	1 cut(s)	265
Hin1I	GRCGYC	1 cut(s)	276
Hin1II	CATG	2 cut(s)	29, 359
HinfI	GANTC	2 cut(s)	241, 267
HphI	GGTGA	1 cut(s)	227
Hpy188III	TCNNGA	1 cut(s)	245
Hpy99I	CGWCG	1 cut(s)	281
HpyAV	CCTTC	2 cut(s)	151, 275
HpyCH4V	TGCA	5 cut(s)	29, 38, 122, 224, 289
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 77, 299
HpyF3I	CTNAG	2 cut(s)	150, 384
Hsp92I	GRCGYC	1 cut(s)	276
Hsp92II	CATG	2 cut(s)	29, 359
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 19
LpnPI	CCDG	2 cut(s)	177, 275
Lsp1109I	GCAGC	1 cut(s)	41
LweI	GCATC	3 cut(s)	67, 100, 131
MaeI	CTAG	3 cut(s)	41, 176, 303
MaeIII	GTNAC	2 cut(s)	166, 305
MalI	GATC	2 cut(s)	5, 21
MboI	GATC	2 cut(s)	3, 19
MboII	GAAGA	2 cut(s)	208, 260
MfeI	CAATTG	1 cut(s)	210
MflI	RGATCY	1 cut(s)	19
MluCI	AATT	2 cut(s)	104, 210
MmeI	TCCRAC	1 cut(s)	214
MunI	CAATTG	1 cut(s)	210
MwoI	GCNNNNNNNGC	3 cut(s)	35, 77, 299
NcoI	CCATGG	1 cut(s)	355
NdeI	CATATG	1 cut(s)	131
NdeII	GATC	2 cut(s)	3, 19
NlaIII	CATG	2 cut(s)	29, 359
NmeAIII	GCCGAG	1 cut(s)	346
NmuCI	GTSAC	1 cut(s)	305
NspI	RCATGY	1 cut(s)	29
PfeI	GAWTC	2 cut(s)	241, 267
PkrI	GCNGC	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	19
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	2 cut(s)	3, 19
SetI	ASST	2 cut(s)	112, 286
SfaNI	GCATC	3 cut(s)	67, 100, 131
SpeI	ACTAGT	2 cut(s)	40, 175
Sse9I	AATT	2 cut(s)	104, 210
SspMI	CTAG	3 cut(s)	41, 176, 303
StyI	CCWWGG	1 cut(s)	355
TaqI	TCGA	1 cut(s)	279
TasI	AATT	2 cut(s)	104, 210
TfiI	GAWTC	2 cut(s)	241, 267
TscAI	CASTG	1 cut(s)	277
TseFI	GTSAC	1 cut(s)	305
TseI	GCWGC	1 cut(s)	29
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	1 cut(s)	101
TspRI	CASTG	1 cut(s)	277
XceI	RCATGY	1 cut(s)	29
XspI	CTAG	3 cut(s)	41, 176, 303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.