Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0012524

Physical Location & Seq

Genomic Coordinates Reverse (-)

4035114 .. 4036511

Gene Structure 1398 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g06190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1398 bp

ATGGGGAGGCCAGAATCACTCCTCCACCAGCTCAAGCATGTTGTAAAAAAGAAGGAAGTCGAAATTGAGGAGCTCTGCAAGACTCATTATGAGGAATTCATTCTTGCAGTTGATGAGCTTCGTGGTGTGTTGGTTGACGCCGAAGAGCTCAAAGGCCAGCTCTCTAGTGATAATTTCAAGTTGCAAGAGGTCGGGAGCGCTTTGCTGATTAAACTCGAGGAGCTTCTTGAATCTTATTCAATAAAAAAGAATGTGACGGAAGCTATCAAAATGTCCAAGAACTGTGTACAGGTGTTGGAGCTCTGTGTTAAGTTTAATAAGCACATTTCCGAAGGCCAGTTTTACCCGGCATTGAAGACTTTGGATTTGATTGAGAAAAATTACTTGCAGAATATTCCTGTTAGGACACTAAGAATGGTCATAGAGAAGAGAATTCCGATCATTAAATTGCACATTGAGAAGAAAGTAACCAGTCAATTCAATGAATGGCTGGTTCACATAAGGAGTTCTGCAAAGGATATTGGACAAACCGCAATAGGCCATGCTGCATCTGCCCGTCAGAAGGCTGAGGAAATTCTCGAACTCCAAAGGGTAGTTGAGGAGCAGAATATTTCGGGGCTGGGAGATTTCGCATATACTTTGGATGTTGAAGAGATTGTTGAAGAATCTATTTTGAAGGTTGATTTGACTCCTCTATACAGGGCATATCACATCCAAAGTTGCCTTGGAATCCAAGAGCAGTTTTGGGAATATTACTACAGAAATCGATTGTTGCAGCTTAATTCGGACTTGCAGATCTCTTCAGCACAGCCTTTTGTTGAATCCTACCAAACTTTTTTGGCTCAAATTGCTGGATACTTCATAGTGGAGGATCGTGTATTGAGGACTGCTGGGGGCCTGCTGTTAGCCGAGCAAGTTGAAACAATGTGGGACACAGCTTTAGCGAAAATGAAATCTCTGGTAGAGGAACAATTCTCCCTTATGAATTCTGCAACCCATCTTCTTTTGGTAAAGGATTATGTGACTCTTCTTGGCTCTACTCTTAGACAATATGGATATGAAGTGGGACCACTTCTTGAGACGCTTGACAAGAGCCGAAAGAAATACCACGAGCTTCTTTCAGAAGAGTGTCGGAAACAAATCGCAAATGTTATTGCCAATGATACCTATGAGCAGATGGTCTTGAAAAAGGACACTGACTACGAAAGTAATGTCCTGTCATTCAATCTCCAGACATCAGATATAATACCGGCTTTTCCATATATTGCACCATTCTCCTCTGCAGTACCTGATACCTGCCGAATTGTCATAGAGAAGAGAATTCCGATCGATCATTCATCAAAGGGTCTGTTGATTACTTGTCTCATGGGGCACATACTAATTATTATGATGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000145 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005938 GO:0007154 GO:0008037 GO:0008150 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009875 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0044706 GO:0048468 GO:0048544 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060321 GO:0060560 GO:0071840 GO:0071944 GO:0099023 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec15

Protein Analysis

466

Amino Acids

53.28

Weight (kDa)

5.53

Isoelectric Point (pI)

52.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXOC6_Sec15_N	PF20651	10 - 179	2.8e-54	Exocyst complex component EXOC6/Sec15, N-terminal
Sec15_C	PF04091	357 - 436	4.1e-18	Exocyst complex subunit Sec15 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012524)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56640
fragaria_vesca	FvH4_5g19480 FvH4_5g19480 FvH4_5g19480
malus_domestica	MD13G1069100.v1.1 MD16G1069400.v1.1
prunus_persica	Prupe.1G277600_v2.0.a1
pyrus_communis	pycom13g06190 pycom16g06060
rosa_chinensis	RchiOBHm_Chr7g0204061
rosa_laevigata	RLG00000003491
rosa_multiflora	Rmu_sc0001311.1_g000011
rosa_roxburghii	Rroxscaffold_3G00253390
rosa_rugosa	Rorug07G0080300
rosa_samantha	Rh7AG210300 Rh7BG208900 Rh7CG222700 Rh7DG217000
rosa_wichuraiana	Rw7G018310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1304
AciI	CCGC	1 cut(s)	531
AclWI	GGATC	1 cut(s)	879
AcsI	RAATTY	5 cut(s)	95, 432, 573, 985, 1320
AcuI	CTGAAG	1 cut(s)	786
AcyI	GRCGYC	1 cut(s)	138
AfaI	GTAC	2 cut(s)	288, 1287
AfeI	AGCGCT	1 cut(s)	199
AfiI	CCNNNNNNNGG	1 cut(s)	562
Alw21I	GWGCWC	3 cut(s)	75, 150, 303
Alw26I	GTCTC	2 cut(s)	1073, 1367
AlwI	GGATC	1 cut(s)	879
AlwNI	CAGNNNCTG	1 cut(s)	1289
Ama87I	CYCGRG	1 cut(s)	215
Aor51HI	AGCGCT	1 cut(s)	199
AoxI	GGCC	5 cut(s)	8, 154, 334, 538, 895
ApeKI	GCWGC	2 cut(s)	545, 775
ApoI	RAATTY	5 cut(s)	95, 432, 573, 985, 1320
ArsI	GACNNNNNNTTYG	4 cut(s)	349, 381, 1197, 1229
Asp700I	GAANNNNTTC	1 cut(s)	99
AspLEI	GCGC	1 cut(s)	200
AspS9I	GGNCC	2 cut(s)	895, 1067
AsuC2I	CCSGG	1 cut(s)	347
AvaI	CYCGRG	1 cut(s)	215
AvaII	GGWCC	1 cut(s)	1067
BaeGI	GKGCMC	1 cut(s)	1374
BanII	GRGCYC	3 cut(s)	75, 150, 303
BauI	CACGAG	1 cut(s)	1109
BbsI	GAAGAC	1 cut(s)	362
Bbv12I	GWGCWC	3 cut(s)	75, 150, 303
BbvCI	CCTCAGC	1 cut(s)	567
BbvI	GCAGC	2 cut(s)	532, 787
BccI	CCATC	2 cut(s)	1005, 1171
BciVI	GTATCC	1 cut(s)	848
BcnI	CCSGG	1 cut(s)	347
BcoDI	GTCTC	2 cut(s)	1073, 1367
BfaI	CTAG	1 cut(s)	165
BfmI	CTRYAG	2 cut(s)	757, 1281
BfoI	RGCGCY	1 cut(s)	201
BfuAI	ACCTGC	1 cut(s)	1304
BfuI	GTATCC	1 cut(s)	848
BglII	AGATCT	1 cut(s)	795
BisI	GCNGC	2 cut(s)	546, 776
BlsI	GCNGC	2 cut(s)	547, 777
Bme1390I	CCNGG	1 cut(s)	347
Bme18I	GGWCC	1 cut(s)	1067
BmeT110I	CYCGRG	1 cut(s)	215
BmgT120I	GGNCC	2 cut(s)	895, 1067
BmiI	GGNNCC	2 cut(s)	896, 1068
BmrFI	CCNGG	1 cut(s)	347
BmsI	GCATC	1 cut(s)	557
BpiI	GAAGAC	1 cut(s)	362
BpmI	CTGGAG	1 cut(s)	1214
Bpu10I	CCTNAGC	1 cut(s)	567
BpuEI	CTTGAG	2 cut(s)	17, 1097
BpuMI	CCSGG	1 cut(s)	347
Bsa29I	ATCGAT	2 cut(s)	766, 1329
BsaHI	GRCGYC	1 cut(s)	138
BsaJI	CCNNGG	1 cut(s)	724
Bsc4I	CCNNNNNNNGG	1 cut(s)	562
Bse118I	RCCGGY	1 cut(s)	1249
Bse1I	ACTGG	2 cut(s)	337, 471
BseCI	ATCGAT	2 cut(s)	766, 1329
BseDI	CCNNGG	1 cut(s)	724
BseGI	GGATG	2 cut(s)	649, 711
BseLI	CCNNNNNNNGG	1 cut(s)	562
BseMII	CTCAG	1 cut(s)	558
BseNI	ACTGG	2 cut(s)	337, 471
BseRI	GAGGAG	6 cut(s)	11, 83, 233, 614, 681, 1267
BseSI	GKGCMC	1 cut(s)	1374
BseXI	GCAGC	2 cut(s)	532, 787
BseYI	CCCAGC	2 cut(s)	619, 890
Bsh1285I	CGRYCG	1 cut(s)	1329
BshFI	GGCC	5 cut(s)	10, 156, 336, 540, 897
BshVI	ATCGAT	2 cut(s)	766, 1329
BsiEI	CGRYCG	1 cut(s)	1329
BsiHKAI	GWGCWC	3 cut(s)	75, 150, 303
BsiHKCI	CYCGRG	1 cut(s)	215
BsiSI	CCGG	2 cut(s)	347, 1250
BslFI	GGGAC	2 cut(s)	944, 1080
BslI	CCNNNNNNNGG	1 cut(s)	562
BsmAI	GTCTC	2 cut(s)	1073, 1367
BsmBI	CGTCTC	1 cut(s)	1073
BsmFI	GGGAC	2 cut(s)	944, 1080
BsnI	GGCC	5 cut(s)	10, 156, 336, 540, 897
BsoBI	CYCGRG	1 cut(s)	215
Bsp1286I	GDGCHC	4 cut(s)	75, 150, 303, 1374
Bsp1407I	TGTACA	1 cut(s)	286
Bsp143I	GATC	5 cut(s)	438, 795, 871, 1326, 1330
BspACI	CCGC	1 cut(s)	531
BspANI	GGCC	5 cut(s)	10, 156, 336, 540, 897
BspCNI	CTCAG	1 cut(s)	559
BspDI	ATCGAT	2 cut(s)	766, 1329
BspLI	GGNNCC	2 cut(s)	896, 1068
BspMAI	CTGCAG	1 cut(s)	1285
BspMI	ACCTGC	1 cut(s)	1304
BspPI	GGATC	1 cut(s)	879
BspQI	GCTCTTC	1 cut(s)	138
BsrFI	RCCGGY	1 cut(s)	1249
BsrGI	TGTACA	1 cut(s)	286
BsrI	ACTGG	2 cut(s)	337, 471
BssAI	RCCGGY	1 cut(s)	1249
BssECI	CCNNGG	1 cut(s)	724
BssMI	GATC	5 cut(s)	438, 795, 871, 1326, 1330
BssNI	GRCGYC	1 cut(s)	138
BssSI	CACGAG	1 cut(s)	1109
BssT1I	CCWWGG	1 cut(s)	724
Bst2BI	CACGAG	1 cut(s)	1109
Bst4CI	ACNGT	1 cut(s)	284
Bst6I	CTCTTC	7 cut(s)	138, 422, 645, 805, 1032, 1119, 1310
BstACI	GRCGYC	1 cut(s)	138
BstAUI	TGTACA	1 cut(s)	286
BstC8I	GCNNGC	2 cut(s)	158, 899
BstDEI	CTNAG	3 cut(s)	410, 567, 1043
BstF5I	GGATG	2 cut(s)	649, 711
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	5 cut(s)	441, 798, 874, 1329, 1333
BstMAI	GTCTC	2 cut(s)	1073, 1367
BstMBI	GATC	5 cut(s)	438, 795, 871, 1326, 1330
BstMCI	CGRYCG	1 cut(s)	1329
BstMWI	GCNNNNNNNGC	2 cut(s)	551, 848
BstNSI	RCATGY	1 cut(s)	41
BstSCI	CCNGG	1 cut(s)	345
BstSFI	CTRYAG	2 cut(s)	757, 1281
BstSLI	GKGCMC	1 cut(s)	1374
BstV1I	GCAGC	2 cut(s)	532, 787
BstV2I	GAAGAC	1 cut(s)	362
BstX2I	RGATCY	1 cut(s)	795
BstYI	RGATCY	1 cut(s)	795
Bsu15I	ATCGAT	2 cut(s)	766, 1329
BsuI	GTATCC	1 cut(s)	848
BsuRI	GGCC	5 cut(s)	10, 156, 336, 540, 897
BsuTUI	ATCGAT	2 cut(s)	766, 1329
BtsCI	GGATG	2 cut(s)	649, 711
BtsIMutI	CAGTG	1 cut(s)	1194
BveI	ACCTGC	1 cut(s)	1304
Cac8I	GCNNGC	2 cut(s)	158, 899
CaiI	CAGNNNCTG	1 cut(s)	1289
CfoI	GCGC	1 cut(s)	200
Cfr10I	RCCGGY	1 cut(s)	1249
Cfr13I	GGNCC	2 cut(s)	895, 1067
ClaI	ATCGAT	2 cut(s)	766, 1329
CseI	GACGC	2 cut(s)	146, 1090
Csp6I	GTAC	2 cut(s)	287, 1286
CviAII	CATG	3 cut(s)	38, 542, 1366
CviQI	GTAC	2 cut(s)	287, 1286
DdeI	CTNAG	3 cut(s)	410, 567, 1043
DpnI	GATC	5 cut(s)	440, 797, 873, 1328, 1332
DpnII	GATC	5 cut(s)	438, 795, 871, 1326, 1330
Eam1104I	CTCTTC	7 cut(s)	138, 422, 645, 805, 1032, 1119, 1310
EarI	CTCTTC	7 cut(s)	138, 422, 645, 805, 1032, 1119, 1310
Ecl136II	GAGCTC	3 cut(s)	73, 148, 301
Eco130I	CCWWGG	1 cut(s)	724
Eco24I	GRGCYC	3 cut(s)	75, 150, 303
Eco47I	GGWCC	1 cut(s)	1067
Eco47III	AGCGCT	1 cut(s)	199
Eco53kI	GAGCTC	3 cut(s)	73, 148, 301
Eco57I	CTGAAG	1 cut(s)	786
Eco88I	CYCGRG	1 cut(s)	215
EcoICRI	GAGCTC	3 cut(s)	73, 148, 301
EcoO109I	RGGNCCY	1 cut(s)	895
EcoRI	GAATTC	4 cut(s)	95, 432, 985, 1320
EcoT14I	CCWWGG	1 cut(s)	724
EcoT38I	GRGCYC	3 cut(s)	75, 150, 303
ErhI	CCWWGG	1 cut(s)	724
Esp3I	CGTCTC	1 cut(s)	1073
FaeI	CATG	3 cut(s)	41, 545, 1369
FaqI	GGGAC	2 cut(s)	944, 1080
FatI	CATG	3 cut(s)	37, 541, 1365
Fnu4HI	GCNGC	2 cut(s)	546, 776
FokI	GGATG	2 cut(s)	656, 698
FriOI	GRGCYC	3 cut(s)	75, 150, 303
Fsp4HI	GCNGC	2 cut(s)	546, 776
FspBI	CTAG	1 cut(s)	165
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	2 cut(s)	546, 776
GsaI	CCCAGC	2 cut(s)	623, 894
GsuI	CTGGAG	1 cut(s)	1214
HaeII	RGCGCY	1 cut(s)	201
HaeIII	GGCC	5 cut(s)	10, 156, 336, 540, 897
HapII	CCGG	2 cut(s)	347, 1250
HgaI	GACGC	2 cut(s)	146, 1090
HhaI	GCGC	1 cut(s)	200
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	3 cut(s)	41, 545, 1369
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HinfI	GANTC	8 cut(s)	14, 82, 230, 665, 688, 729, 821, 1024
HpaII	CCGG	2 cut(s)	347, 1250
Hpy166II	GTNNAC	3 cut(s)	136, 287, 496
Hpy188I	TCNGA	8 cut(s)	331, 438, 561, 787, 1123, 1134, 1240, 1326
Hpy188III	TCNNGA	6 cut(s)	193, 227, 578, 1076, 1183, 1231
Hpy8I	GTNNAC	3 cut(s)	136, 287, 496
HpyAV	CCTTC	4 cut(s)	46, 326, 556, 670
HpyCH4III	ACNGT	1 cut(s)	284
HpyF10VI	GCNNNNNNNGC	2 cut(s)	551, 848
HpyF3I	CTNAG	3 cut(s)	410, 567, 1043
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	3 cut(s)	41, 545, 1369
HspAI	GCGC	1 cut(s)	198
Kzo9I	GATC	5 cut(s)	438, 795, 871, 1326, 1330
LguI	GCTCTTC	1 cut(s)	138
LmnI	GCTCC	5 cut(s)	70, 195, 220, 298, 601
Lsp1109I	GCAGC	2 cut(s)	532, 787
LweI	GCATC	1 cut(s)	557
MaeI	CTAG	1 cut(s)	165
MaeIII	GTNAC	3 cut(s)	253, 466, 1021
MalI	GATC	5 cut(s)	440, 797, 873, 1328, 1332
MboI	GATC	5 cut(s)	438, 795, 871, 1326, 1330
MflI	RGATCY	1 cut(s)	795
MhlI	GDGCHC	4 cut(s)	75, 150, 303, 1374
MlyI	GAGTC	3 cut(s)	76, 682, 1018
MmeI	TCCRAC	2 cut(s)	276, 1112
MroXI	GAANNNNTTC	1 cut(s)	99
MseI	TTAA	5 cut(s)	210, 309, 315, 444, 780
MspI	CCGG	2 cut(s)	347, 1250
MspR9I	CCNGG	1 cut(s)	347
MwoI	GCNNNNNNNGC	2 cut(s)	551, 848
NciI	CCSGG	1 cut(s)	347
NdeII	GATC	5 cut(s)	438, 795, 871, 1326, 1330
NlaIII	CATG	3 cut(s)	41, 545, 1369
NlaIV	GGNNCC	2 cut(s)	896, 1068
NmeAIII	GCCGAG	1 cut(s)	934
NmuCI	GTSAC	2 cut(s)	253, 1021
NspI	RCATGY	1 cut(s)	41
PaeR7I	CTCGAG	1 cut(s)	215
PciSI	GCTCTTC	1 cut(s)	138
PdmI	GAANNNNTTC	1 cut(s)	99
PfeI	GAWTC	5 cut(s)	14, 230, 665, 729, 821
PkrI	GCNGC	2 cut(s)	547, 777
Ple19I	CGATCG	1 cut(s)	1329
PleI	GAGTC	3 cut(s)	76, 682, 1018
PpsI	GAGTC	3 cut(s)	76, 682, 1018
Psp124BI	GAGCTC	3 cut(s)	75, 150, 303
PspFI	CCCAGC	2 cut(s)	619, 890
PspN4I	GGNNCC	2 cut(s)	896, 1068
PspPI	GGNCC	2 cut(s)	895, 1067
PspXI	VCTCGAGB	1 cut(s)	215
PstI	CTGCAG	1 cut(s)	1285
PstNI	CAGNNNCTG	1 cut(s)	1289
PsuI	RGATCY	1 cut(s)	795
PvuI	CGATCG	1 cut(s)	1329
RsaI	GTAC	2 cut(s)	288, 1287
RsaNI	GTAC	2 cut(s)	287, 1286
SacI	GAGCTC	3 cut(s)	75, 150, 303
SapI	GCTCTTC	1 cut(s)	138
SaqAI	TTAA	5 cut(s)	210, 309, 315, 444, 780
SatI	GCNGC	2 cut(s)	546, 776
Sau3AI	GATC	5 cut(s)	438, 795, 871, 1326, 1330
Sau96I	GGNCC	2 cut(s)	895, 1067
SchI	GAGTC	3 cut(s)	76, 682, 1018
ScrFI	CCNGG	1 cut(s)	347
SduI	GDGCHC	4 cut(s)	75, 150, 303, 1374
SfaNI	GCATC	1 cut(s)	557
SfcI	CTRYAG	2 cut(s)	757, 1281
Sfr274I	CTCGAG	1 cut(s)	215
SinI	GGWCC	1 cut(s)	1067
SlaI	CTCGAG	1 cut(s)	215
SmlI	CTYRAG	3 cut(s)	32, 215, 1076
SmoI	CTYRAG	3 cut(s)	32, 215, 1076
SsiI	CCGC	1 cut(s)	531
SspI	AATATT	3 cut(s)	394, 610, 752
SspMI	CTAG	1 cut(s)	165
SstI	GAGCTC	3 cut(s)	75, 150, 303
StyD4I	CCNGG	1 cut(s)	345
StyI	CCWWGG	1 cut(s)	724
TaaI	ACNGT	1 cut(s)	284
TaqI	TCGA	5 cut(s)	60, 216, 579, 766, 1329
TatI	WGTACW	1 cut(s)	286
TfiI	GAWTC	5 cut(s)	14, 230, 665, 729, 821
Tru1I	TTAA	5 cut(s)	210, 309, 315, 444, 780
Tru9I	TTAA	5 cut(s)	210, 309, 315, 444, 780
TscAI	CASTG	1 cut(s)	1201
TseFI	GTSAC	2 cut(s)	253, 1021
TseI	GCWGC	2 cut(s)	545, 775
Tsp45I	GTSAC	2 cut(s)	253, 1021
TspDTI	ATGAA	7 cut(s)	88, 498, 850, 965, 998, 1074, 1326
TspGWI	ACGGA	1 cut(s)	272
TspRI	CASTG	1 cut(s)	1201
VpaK11BI	GGWCC	1 cut(s)	1067
XapI	RAATTY	5 cut(s)	95, 432, 573, 985, 1320
XceI	RCATGY	1 cut(s)	41
XcmI	CCANNNNNNNNNTGG	1 cut(s)	722
XhoI	CTCGAG	1 cut(s)	215
XmnI	GAANNNNTTC	1 cut(s)	99
XspI	CTAG	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.