Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0012524

Physical Location & Seq

Genomic Coordinates Reverse (-)

6245913 .. 6250217

Gene Structure 4305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0080300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3231 bp

ATGAGTACTTCTATGACGAATCTGGGATCCTCTTCCTCTTCTTCCTTCACTCATTCATGGACATATCATGTCTTCTTGAGCTTTAGAGGTAAGGATACACGCAACGGTTTCACAGGCCACTTGTACAAGGCTCTAGTTGATAAGGGAATTTACACATTCATTGATGAAAGCAAACTTAAAAGAGGAGAAGAAATATCAGCAGCACTTCTTGAAGCAATTGAAGACTCAAAGATTGCTATCATTGTATTCTCCGAAAACTATGCCTCATCTACGTGGTGCTTGGATGAACTCGTTAAGATTCTTGAATGTAAGGAATCAAATCAACAAATAGTCATGCCCATCTTTTACAAGGTGGATCCATTTCATGTACGATACCAGAGAGGTAGTTTTGAGGAGGCATTTGCTAGACATGAATCCAAATTCAAGGATGACCTGGCCAAAGTCAACCGATGGCGAGCAGCTCTTAAAGAAGCAGCAGATTTGTCGGGGTGGCCTTACTTGGACGGGTACGAATATCTATTTATACAAAAGATTGTTCAAGAGATATCATCCCAAACATTAAAGTGTACCTATTTGGATGTAGCCAAATATCCCGTTGGAATAGATTCTTGTTTAGACGAGATAGAGGAGCTTTTAGGGCTCGAAGAAAATGATATTCGCATGGTTGGGATATGGGGCATTGGTGGTATAGGTAAAACCACACTTGCTAAAGCTGTTTATAATTCTTTTGCTCACAGCTTTGAAGGTTATTGTTTTCTAGCAAATGTCAGAGAAAATTCAATGTCAGATGAAGGGTTAGTCCGACTACAGAAGACTCTTCTCTTTGATACTCTAAGAGACGCAAACTTGAATGTGACCAACGTTGGTATAGGAGCCTCTGTAATAAGGGAAATGTTGAGATGTAAGAGGGATTTCTTAATTCTTGATGATGTGAATAAATCAGAACAGTTATATAACTTAGCTGGGGGGTTAAAGTGGTTTGGTCCTGGTAGTAGAATTGTCATAACATCAAGAGATAAATGGTTGTTAACTACTCATCGAGTTGATTCAATATATGAGGTCAAAAAATTAGATGCTCATGAAGCCCTTGAGCTTTTCAGTTGGCATGCCTTCGAAAGAAATGAACCTTTACCCAATTATGCGAAACTCACACAATGTGCAGTAGAATATGCTCAAGGGCTTCCCCTAGCTGTGACAGTTTTAGGTTCTAATCTTTTTGGTAAAAGCATAGGCGAATGGCAAGATACATTAGATTGTTATAAAAGAGTTCCCAACCAACAAAGTCAAGAAATTCTTAGAATTAGTTACGATGCTTTAGAGGATCCTGTGAAAGAATTATTGCTTGACATTGCATGTTTCTTTAAAGGTGAAAGCATGACTCATGTTAGACAAATATTAGAAGGTTGTGTGAGTGGCATTCAAGTACTGAAAGAAAAGTCCCTCGTAACTATTGGCCAAAATAAGAAGATTCTCATGCATGATCTGCTAGAGAAAATGGGGAAAGAAATAGTACGGCAGGAATCTCCTGTTGAACCTGGCAGACGTAGTAGATTGTGGCTTCCTGAAGATGTTTGTCATGTACTAACAGAAAATACAGGAACATATAATGTTAGAGGCATCATCATAAAGTTGCCCAAACGTGATGCTATATGCTTGGGAACTAAAAGCTTCGAAGGGATGAAAAATCTTAAATTTTTTATAAACTGCAATGCAGACCTTTCTGGAGAGATTAGTTATCTACCGAATGAGTTGAGGCTGCTTGTTTGGCCTGGATATCCTTTGAAATCTTTGCCACCTAATTATCATCCTGGGAAGCTTATCGTACTCCGTATGCCTTCTAGTAACATTAGACAGCTGGGGACTGGTTTTAAGGTCTCCCAGAATTTGAAGACTATGGATTTGAAAGGAAGCAAATTCCTATCAAAAATCCCCGACTTATCTGGAATGCCAAATTTACAGACACTGAACCTAGATTATTGTACAAAGTTAGTTGAGGTTCATTATTCTGTTGGACGCCTTGAGAAACTCGTTACCTTGAGTCTTAAAGAATGCTGTAGACTTCAGATATTTCCAAGAAAAGTCAGCTTGAGTTCTCTGGAATCTATTAATCTTTCAGGCTTTAAGCTCGAGTATTTCCCTGAAATAGAAGGAAAGATGGAATCCTTAAGAAGTATAGATCTAACTCTCACTTCCATCAAAGAACTGCCATCATCAATCGGCTGCCTCCTCGGGCTTCGTGTGTTATACTTGAATGGGTGCTACAAACTTTCAAAACTGCCACCCAGCATTTATAAGTTGAAATATCTAGAGTATCTAGGGCTTCACAAGTGCGCCCGAATTTCAACATTTCCAGATGACAAAAACTCTGATGTTTCACAGAGGGCAGTCTGTAGCTTATTAGTTTTCACTAAGCTAGCAGAGGTTCAAATGGGAGGAATGAAGGAGAAAGTTATATCACAAGCATTTGGTTCGTGCATGATTGACTACTTGTTCACATTGCATAGGCTTGATCTCTCCAGAAGCAAGTTTTCTGGCATTCCTGTATGCATCAGCAACCTCGTGAATTTGACAAAACTCGACTTACATGGTTGTATACAGCTTAAAGAAATTCCAGAACTTCCGTCAAGCGTAAAATGGGTTGATGTCGCTGGTTGCAGATCATTGACAAGATTTCGACAATTGTATGATATACCCGGTGGAATTGAGTGGTTCAACTTGATAAATTGTATTGGAACATGTGTGAATCTGGACTATGGAATGATAATGATAAACAAGATTGTATGGAATCAGGTATCTTCCAAGCCCTTTAAATTTGGAACTGTATTCCCAGGAAGTGAAGTTCCCAAGTGGTTCAGTCACACTGTGATTCCAGATCATTTCCCTACCCTTCCATTTTACCGCCCCTCTGAATACCTAGTTCCCATATGTGAGCATGCAATTGAAATTCCTGCACAATTCAAATGGGAGAACACCGGAGTGGCTTTCTGTATTGTCTTCAACTTTAGAGACCACTGCAGCCAGGATTGGTACAGTGATTGCAATTGCTATTTCCGAGCTGTAGTTCACATCAATGACGTACACATCGGTGATTATCAGTCCCCCTTCTATCCTCGAAGGACGCGACAGGAACATATATGGCTGCAATATGATCCATTGCCAGTTGAGTTAGGCCAAGGTAGATGGAGAGACTGGGTTGCTGCGTTTGGGTACTCATTACAACTGTCGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000145 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005938 GO:0007154 GO:0008037 GO:0008150 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009875 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0044706 GO:0048468 GO:0048544 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060321 GO:0060560 GO:0071840 GO:0071944 GO:0099023 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec15

Protein Analysis

1076

Amino Acids

122.46

Weight (kDa)

7.63

Isoelectric Point (pI)

43.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	22 - 186	6.2e-56	TIR domain
TIR_2	PF13676	24 - 120	2e-15	TIR domain
NB-ARC	PF00931	206 - 374	1.8e-19	NB-ARC domain
WHD_ROQ1	PF23282	444 - 508	6e-15	Disease resistance protein Roq1-like, winged-helix domain
LRR_13	PF23286	696 - 778	2.8e-07	Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14	PF23598	717 - 780	1.8e-07	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0012524)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56640
fragaria_vesca	FvH4_5g19480 FvH4_5g19480 FvH4_5g19480
malus_domestica	MD13G1069100.v1.1 MD16G1069400.v1.1
prunus_persica	Prupe.1G277600_v2.0.a1
pyrus_communis	pycom13g06190 pycom16g06060
rosa_chinensis	RchiOBHm_Chr7g0204061
rosa_laevigata	RLG00000003491
rosa_multiflora	Rmu_sc0001311.1_g000011
rosa_roxburghii	Rroxscaffold_3G00253390
rosa_rugosa	Rorug07G0080300
rosa_samantha	Rh7AG210300 Rh7BG208900 Rh7CG222700 Rh7DG217000
rosa_wichuraiana	Rw7G018310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	720, 1260, 1700, 2292
AccI	GTMKAC	2 cut(s)	2056, 2593
AccII	CGCG	1 cut(s)	3121
AciI	CCGC	1 cut(s)	2899
AclI	AACGTT	1 cut(s)	861
AclWI	GGATC	7 cut(s)	21, 34, 350, 363, 1316, 1329, 3143
AcoI	YGGCCR	2 cut(s)	435, 1453
AcuI	CTGAAG	2 cut(s)	1584, 2045
AcyI	GRCGYC	1 cut(s)	2014
AdeI	CACNNNGTG	2 cut(s)	1157, 2863
AflII	CTTAAG	1 cut(s)	2164
AflIII	ACRYGT	1 cut(s)	2735
AjnI	CCWGG	7 cut(s)	432, 985, 1534, 1768, 1807, 2827, 3018
AleI	CACNNNNGTG	2 cut(s)	2975, 3084
AloI	GAACNNNNNNTCC	2 cut(s)	2823, 2855
Alw26I	GTCTC	4 cut(s)	831, 1879, 3000, 3180
AlwI	GGATC	7 cut(s)	21, 34, 350, 363, 1316, 1329, 3143
AlwNI	CAGNNNCTG	1 cut(s)	1963
Ama87I	CYCGRG	2 cut(s)	2126, 2228
AoxI	GGCC	6 cut(s)	115, 435, 491, 1453, 1766, 3169
ApeKI	GCWGC	8 cut(s)	200, 458, 473, 1756, 2220, 3015, 3139, 3197
ArsI	GACNNNNNNTTYG	2 cut(s)	1882, 1914
AseI	ATTAAT	1 cut(s)	2106
Asp700I	GAANNNNTTC	1 cut(s)	604
AspLEI	GCGC	1 cut(s)	2333
AspS9I	GGNCC	1 cut(s)	983
AsuC2I	CCSGG	1 cut(s)	2694
AsuHPI	GGTGA	2 cut(s)	1379, 3098
AsuII	TTCGAA	2 cut(s)	1113, 1671
AsuNHI	GCTAGC	1 cut(s)	2413
AvaI	CYCGRG	2 cut(s)	2126, 2228
AvaII	GGWCC	1 cut(s)	983
BalI	TGGCCA	2 cut(s)	437, 1455
BamHI	GGATCC	3 cut(s)	26, 355, 1321
BanII	GRGCYC	1 cut(s)	642
BauI	CACGAG	1 cut(s)	2558
BbsI	GAAGAC	5 cut(s)	64, 228, 818, 1895, 2986
BbvI	GCAGC	8 cut(s)	212, 470, 485, 1743, 2207, 3027, 3126, 3184
BccI	CCATC	6 cut(s)	347, 444, 2149, 2201, 2215, 3174
BceAI	ACGGC	1 cut(s)	1529
BcgI	CGANNNNNNTGC	6 cut(s)	242, 276, 465, 499, 2451, 2485
BciT130I	CCWGG	7 cut(s)	434, 987, 1536, 1770, 1809, 2829, 3020
BciVI	GTATCC	1 cut(s)	88
BcnI	CCSGG	1 cut(s)	2694
BcoDI	GTCTC	4 cut(s)	831, 1879, 3000, 3180
BfmI	CTRYAG	5 cut(s)	806, 2053, 2389, 3013, 3057
BfrI	CTTAAG	1 cut(s)	2164
BfuI	GTATCC	1 cut(s)	88
BglII	AGATCT	1 cut(s)	2176
BisI	GCNGC	8 cut(s)	201, 459, 474, 1757, 2221, 3016, 3140, 3198
BlsI	GCNGC	8 cut(s)	202, 460, 475, 1758, 2222, 3017, 3141, 3199
BmcAI	AGTACT	2 cut(s)	7, 1425
Bme1390I	CCNGG	8 cut(s)	434, 987, 1536, 1770, 1809, 2694, 2829, 3020
Bme18I	GGWCC	1 cut(s)	983
BmeT110I	CYCGRG	2 cut(s)	2126, 2228
BmgT120I	GGNCC	1 cut(s)	983
BmiI	GGNNCC	4 cut(s)	28, 357, 874, 1323
BmrFI	CCNGG	8 cut(s)	434, 987, 1536, 1770, 1809, 2694, 2829, 3020
BmrI	ACTGGG	1 cut(s)	3199
BmsI	GCATC	5 cut(s)	1063, 1300, 1626, 1633, 2556
BmtI	GCTAGC	1 cut(s)	2417
BmuI	ACTGGG	1 cut(s)	3199
BpiI	GAAGAC	5 cut(s)	64, 228, 818, 1895, 2986
BpmI	CTGGAG	2 cut(s)	1743, 2500
Bpu14I	TTCGAA	2 cut(s)	1113, 1671
BpuEI	CTTGAG	6 cut(s)	97, 1109, 1158, 2039, 2056, 2107
BpuMI	CCSGG	1 cut(s)	2694
BsaAI	YACGTR	1 cut(s)	273
BsaBI	GATNNNNATC	1 cut(s)	236
BsaHI	GRCGYC	1 cut(s)	2014
BsaI	GGTCTC	2 cut(s)	1879, 3000
BsaJI	CCNNGG	4 cut(s)	1808, 2227, 2827, 3172
BsaWI	WCCGGW	1 cut(s)	2972
BsaXI	ACNNNNNCTCC	2 cut(s)	864, 894
Bse1I	ACTGG	3 cut(s)	1867, 3158, 3194
Bse3DI	GCAATG	4 cut(s)	1347, 1714, 2495, 3152
Bse8I	GATNNNNATC	1 cut(s)	236
BseBI	CCWGG	7 cut(s)	434, 987, 1536, 1770, 1809, 2829, 3020
BseDI	CCNNGG	4 cut(s)	1808, 2227, 2827, 3172
BseGI	GGATG	6 cut(s)	289, 433, 548, 583, 1683, 1804
BseJI	GATNNNNATC	1 cut(s)	236
BseMI	GCAATG	4 cut(s)	1347, 1714, 2495, 3152
BseNI	ACTGG	3 cut(s)	1867, 3158, 3194
BseRI	GAGGAG	4 cut(s)	198, 407, 641, 2216
BseXI	GCAGC	8 cut(s)	212, 470, 485, 1743, 2207, 3027, 3126, 3184
BseYI	CCCAGC	3 cut(s)	962, 1855, 2282
BsgI	GTGCAG	2 cut(s)	1179, 2934
Bsh1236I	CGCG	1 cut(s)	3121
BshFI	GGCC	6 cut(s)	117, 437, 493, 1455, 1768, 3171
BsiHKCI	CYCGRG	2 cut(s)	2126, 2228
BsiSI	CCGG	2 cut(s)	2694, 2973
BslFI	GGGAC	3 cut(s)	1423, 1873, 3082
BsmAI	GTCTC	4 cut(s)	831, 1879, 3000, 3180
BsmBI	CGTCTC	1 cut(s)	831
BsmFI	GGGAC	3 cut(s)	1423, 1873, 3082
BsmI	GAATGC	4 cut(s)	1416, 1950, 2054, 2535
BsnI	GGCC	6 cut(s)	117, 437, 493, 1455, 1768, 3171
Bso31I	GGTCTC	2 cut(s)	1879, 3000
BsoBI	CYCGRG	2 cut(s)	2126, 2228
Bsp119I	TTCGAA	2 cut(s)	1113, 1671
Bsp1286I	GDGCHC	1 cut(s)	642
Bsp1407I	TGTACA	2 cut(s)	123, 1979
Bsp143I	GATC	9 cut(s)	26, 355, 1321, 1480, 2176, 2509, 2657, 2872, 3148
BspACI	CCGC	1 cut(s)	2899
BspANI	GGCC	6 cut(s)	117, 437, 493, 1455, 1768, 3171
BspFNI	CGCG	1 cut(s)	3121
BspHI	TCATGA	1 cut(s)	1078
BspLI	GGNNCC	4 cut(s)	28, 357, 874, 1323
BspMAI	CTGCAG	1 cut(s)	3017
BspOI	GCTAGC	1 cut(s)	2417
BspPI	GGATC	7 cut(s)	21, 34, 350, 363, 1316, 1329, 3143
BspT104I	TTCGAA	2 cut(s)	1113, 1671
BspTI	CTTAAG	1 cut(s)	2164
BspTNI	GGTCTC	2 cut(s)	1879, 3000
BsrDI	GCAATG	4 cut(s)	1347, 1714, 2495, 3152
BsrGI	TGTACA	2 cut(s)	123, 1979
BsrI	ACTGG	3 cut(s)	1867, 3158, 3194
BssECI	CCNNGG	4 cut(s)	1808, 2227, 2827, 3172
BssMI	GATC	9 cut(s)	26, 355, 1321, 1480, 2176, 2509, 2657, 2872, 3148
BssNAI	GTATAC	1 cut(s)	2594
BssNI	GRCGYC	1 cut(s)	2014
BssSI	CACGAG	1 cut(s)	2558
BssT1I	CCWWGG	1 cut(s)	3172
Bst1107I	GTATAC	1 cut(s)	2594
Bst2BI	CACGAG	1 cut(s)	2558
Bst2UI	CCWGG	7 cut(s)	434, 987, 1536, 1770, 1809, 2829, 3020
Bst4CI	ACNGT	7 cut(s)	107, 948, 1198, 2821, 2863, 3032, 3222
Bst6I	CTCTTC	3 cut(s)	37, 43, 822
BstACI	GRCGYC	1 cut(s)	2014
BstAFI	CTTAAG	1 cut(s)	2164
BstAPI	GCANNNNNTGC	1 cut(s)	1483
BstAUI	TGTACA	2 cut(s)	123, 1979
BstBAI	YACGTR	1 cut(s)	273
BstBI	TTCGAA	2 cut(s)	1113, 1671
BstC8I	GCNNGC	4 cut(s)	456, 1107, 2415, 2934
BstDEI	CTNAG	4 cut(s)	833, 958, 1295, 2409
BstF5I	GGATG	6 cut(s)	289, 433, 548, 583, 1683, 1804
BstFNI	CGCG	1 cut(s)	3121
BstHHI	GCGC	1 cut(s)	2333
BstKTI	GATC	9 cut(s)	29, 358, 1324, 1483, 2179, 2512, 2660, 2875, 3151
BstMAI	GTCTC	4 cut(s)	831, 1879, 3000, 3180
BstMBI	GATC	9 cut(s)	26, 355, 1321, 1480, 2176, 2509, 2657, 2872, 3148
BstMWI	GCNNNNNNNGC	4 cut(s)	637, 1082, 1483, 1765
BstNI	CCWGG	7 cut(s)	434, 987, 1536, 1770, 1809, 2829, 3020
BstNSI	RCATGY	4 cut(s)	1109, 1356, 2739, 2936
BstSCI	CCNGG	8 cut(s)	432, 985, 1534, 1768, 1807, 2692, 2827, 3018
BstSFI	CTRYAG	5 cut(s)	806, 2053, 2389, 3013, 3057
BstUI	CGCG	1 cut(s)	3121
BstV1I	GCAGC	8 cut(s)	212, 470, 485, 1743, 2207, 3027, 3126, 3184
BstV2I	GAAGAC	5 cut(s)	64, 228, 818, 1895, 2986
BstX2I	RGATCY	4 cut(s)	26, 355, 1321, 2176
BstYI	RGATCY	4 cut(s)	26, 355, 1321, 2176
BstZ17I	GTATAC	1 cut(s)	2594
BsuI	GTATCC	1 cut(s)	88
BsuRI	GGCC	6 cut(s)	117, 437, 493, 1455, 1768, 3171
BtsCI	GGATG	6 cut(s)	289, 433, 548, 583, 1683, 1804
BtsI	GCAGTG	1 cut(s)	3010
BtsIMutI	CAGTG	4 cut(s)	1961, 2859, 3010, 3037
Cac8I	GCNNGC	4 cut(s)	456, 1107, 2415, 2934
CaiI	CAGNNNCTG	1 cut(s)	1963
CciI	TCATGA	1 cut(s)	1078
CfoI	GCGC	1 cut(s)	2333
Cfr13I	GGNCC	1 cut(s)	983
CseI	GACGC	3 cut(s)	848, 2022, 3127
DdeI	CTNAG	4 cut(s)	833, 958, 1295, 2409
DpnI	GATC	9 cut(s)	28, 357, 1323, 1482, 2178, 2511, 2659, 2874, 3150
DpnII	GATC	9 cut(s)	26, 355, 1321, 1480, 2176, 2509, 2657, 2872, 3148
DraI	TTTAAA	2 cut(s)	1363, 2809
DraIII	CACNNNGTG	2 cut(s)	1157, 2863
EaeI	YGGCCR	2 cut(s)	435, 1453
Eam1104I	CTCTTC	3 cut(s)	37, 43, 822
EarI	CTCTTC	3 cut(s)	37, 43, 822
Eco130I	CCWWGG	1 cut(s)	3172
Eco24I	GRGCYC	1 cut(s)	642
Eco31I	GGTCTC	2 cut(s)	1879, 3000
Eco32I	GATATC	2 cut(s)	546, 1775
Eco47I	GGWCC	1 cut(s)	983
Eco57I	CTGAAG	2 cut(s)	1584, 2045
Eco88I	CYCGRG	2 cut(s)	2126, 2228
EcoRII	CCWGG	7 cut(s)	432, 985, 1534, 1768, 1807, 2827, 3018
EcoRV	GATATC	2 cut(s)	546, 1775
EcoT14I	CCWWGG	1 cut(s)	3172
EcoT22I	ATGCAT	2 cut(s)	1479, 2549
EcoT38I	GRGCYC	1 cut(s)	642
ErhI	CCWWGG	1 cut(s)	3172
Esp3I	CGTCTC	1 cut(s)	831
FalI	AAGNNNNNCTT	2 cut(s)	1278, 1310
FaqI	GGGAC	3 cut(s)	1423, 1873, 3082
FauNDI	CATATG	1 cut(s)	2924
FblI	GTMKAC	2 cut(s)	2056, 2593
Fnu4HI	GCNGC	8 cut(s)	201, 459, 474, 1757, 2221, 3016, 3140, 3198
FokI	GGATG	6 cut(s)	296, 440, 535, 590, 1690, 1791
FriOI	GRGCYC	1 cut(s)	642
Fsp4HI	GCNGC	8 cut(s)	201, 459, 474, 1757, 2221, 3016, 3140, 3198
GlaI	GCGC	1 cut(s)	2332
GluI	GCNGC	8 cut(s)	201, 459, 474, 1757, 2221, 3016, 3140, 3198
GsaI	CCCAGC	3 cut(s)	966, 1859, 2286
GsuI	CTGGAG	2 cut(s)	1743, 2500
HaeIII	GGCC	6 cut(s)	117, 437, 493, 1455, 1768, 3171
HapII	CCGG	2 cut(s)	2694, 2973
HgaI	GACGC	3 cut(s)	848, 2022, 3127
HhaI	GCGC	1 cut(s)	2333
Hin1I	GRCGYC	1 cut(s)	2014
Hin6I	GCGC	1 cut(s)	2331
HinP1I	GCGC	1 cut(s)	2331
HincII	GTYRAC	2 cut(s)	445, 1029
HindII	GTYRAC	2 cut(s)	445, 1029
HindIII	AAGCTT	2 cut(s)	1666, 1814
HpaI	GTTAAC	1 cut(s)	1029
HpaII	CCGG	2 cut(s)	2694, 2973
HphI	GGTGA	2 cut(s)	1379, 3098
Hpy166II	GTNNAC	8 cut(s)	445, 567, 1029, 2057, 2493, 2594, 3064, 3079
Hpy188I	TCNGA	9 cut(s)	253, 770, 787, 803, 943, 2064, 2368, 2908, 3053
Hpy8I	GTNNAC	8 cut(s)	445, 567, 1029, 2057, 2493, 2594, 3064, 3079
HpyCH4III	ACNGT	7 cut(s)	107, 948, 1198, 2821, 2863, 3032, 3222
HpyCH4IV	ACGT	5 cut(s)	272, 861, 1543, 1639, 3075
HpyF10VI	GCNNNNNNNGC	4 cut(s)	637, 1082, 1483, 1765
HpyF3I	CTNAG	4 cut(s)	833, 958, 1295, 2409
HpySE526I	ACGT	5 cut(s)	272, 861, 1543, 1639, 3075
Hsp92I	GRCGYC	1 cut(s)	2014
HspAI	GCGC	1 cut(s)	2331
KspAI	GTTAAC	1 cut(s)	1029
Kzo9I	GATC	9 cut(s)	26, 355, 1321, 1480, 2176, 2509, 2657, 2872, 3148
LmnI	GCTCC	2 cut(s)	628, 872
Lsp1109I	GCAGC	8 cut(s)	212, 470, 485, 1743, 2207, 3027, 3126, 3184
LweI	GCATC	5 cut(s)	1063, 1300, 1626, 1633, 2556
MaeII	ACGT	5 cut(s)	272, 861, 1543, 1639, 3075
MaeIII	GTNAC	7 cut(s)	853, 1192, 1304, 1444, 1841, 2029, 2855
MalI	GATC	9 cut(s)	28, 357, 1323, 1482, 2178, 2511, 2659, 2874, 3150
MboI	GATC	9 cut(s)	26, 355, 1321, 1480, 2176, 2509, 2657, 2872, 3148
MfeI	CAATTG	4 cut(s)	216, 2678, 2937, 3040
MflI	RGATCY	4 cut(s)	26, 355, 1321, 2176
MhlI	GDGCHC	1 cut(s)	642
MlsI	TGGCCA	2 cut(s)	437, 1455
MluNI	TGGCCA	2 cut(s)	437, 1455
MlyI	GAGTC	4 cut(s)	218, 808, 1372, 2047
MmeI	TCCRAC	3 cut(s)	577, 826, 1990
Mox20I	TGGCCA	2 cut(s)	437, 1455
Mph1103I	ATGCAT	2 cut(s)	1479, 2549
MroXI	GAANNNNTTC	1 cut(s)	604
MscI	TGGCCA	2 cut(s)	437, 1455
MslI	CAYNNNNRTG	5 cut(s)	271, 562, 2975, 3069, 3084
Msp20I	TGGCCA	2 cut(s)	437, 1455
MspA1I	CMGCKG	1 cut(s)	1855
MspCI	CTTAAG	1 cut(s)	2164
MspI	CCGG	2 cut(s)	2694, 2973
MspR9I	CCNGG	8 cut(s)	434, 987, 1536, 1770, 1809, 2694, 2829, 3020
MunI	CAATTG	4 cut(s)	216, 2678, 2937, 3040
Mva1269I	GAATGC	4 cut(s)	1416, 1950, 2054, 2535
MvaI	CCWGG	7 cut(s)	434, 987, 1536, 1770, 1809, 2829, 3020
MvnI	CGCG	1 cut(s)	3121
MwoI	GCNNNNNNNGC	4 cut(s)	637, 1082, 1483, 1765
NciI	CCSGG	1 cut(s)	2694
NdeI	CATATG	1 cut(s)	2924
NdeII	GATC	9 cut(s)	26, 355, 1321, 1480, 2176, 2509, 2657, 2872, 3148
NheI	GCTAGC	1 cut(s)	2413
NlaIV	GGNNCC	4 cut(s)	28, 357, 874, 1323
NmuCI	GTSAC	3 cut(s)	853, 1192, 2855
NsiI	ATGCAT	2 cut(s)	1479, 2549
NspI	RCATGY	4 cut(s)	1109, 1356, 2739, 2936
NspV	TTCGAA	2 cut(s)	1113, 1671
OliI	CACNNNNGTG	2 cut(s)	2975, 3084
PaeI	GCATGC	2 cut(s)	1109, 2936
PaeR7I	CTCGAG	1 cut(s)	2126
PagI	TCATGA	1 cut(s)	1078
PciI	ACATGT	1 cut(s)	2735
PcsI	WCGNNNNNNNCGW	1 cut(s)	3118
PctI	GAATGC	4 cut(s)	1416, 1950, 2054, 2535
PdmI	GAANNNNTTC	1 cut(s)	604
PkrI	GCNGC	8 cut(s)	202, 460, 475, 1758, 2222, 3017, 3141, 3199
PleI	GAGTC	4 cut(s)	218, 808, 1372, 2046
PpsI	GAGTC	4 cut(s)	218, 808, 1372, 2046
Ppu21I	YACGTR	1 cut(s)	273
PscI	ACATGT	1 cut(s)	2735
PshBI	ATTAAT	1 cut(s)	2106
PsiI	TTATAA	4 cut(s)	720, 1260, 1700, 2292
Psp1406I	AACGTT	1 cut(s)	861
Psp6I	CCWGG	7 cut(s)	432, 985, 1534, 1768, 1807, 2827, 3018
PspFI	CCCAGC	3 cut(s)	962, 1855, 2282
PspGI	CCWGG	7 cut(s)	432, 985, 1534, 1768, 1807, 2827, 3018
PspN4I	GGNNCC	4 cut(s)	28, 357, 874, 1323
PspPI	GGNCC	1 cut(s)	983
PspXI	VCTCGAGB	1 cut(s)	2126
PstI	CTGCAG	1 cut(s)	3017
PstNI	CAGNNNCTG	1 cut(s)	1963
PsuI	RGATCY	4 cut(s)	26, 355, 1321, 2176
PvuII	CAGCTG	1 cut(s)	1855
RseI	CAYNNNNRTG	5 cut(s)	271, 562, 2975, 3069, 3084
SatI	GCNGC	8 cut(s)	201, 459, 474, 1757, 2221, 3016, 3140, 3198
Sau3AI	GATC	9 cut(s)	26, 355, 1321, 1480, 2176, 2509, 2657, 2872, 3148
Sau96I	GGNCC	1 cut(s)	983
ScaI	AGTACT	2 cut(s)	7, 1425
SchI	GAGTC	4 cut(s)	218, 808, 1372, 2047
ScrFI	CCNGG	8 cut(s)	434, 987, 1536, 1770, 1809, 2694, 2829, 3020
SduI	GDGCHC	1 cut(s)	642
SfaNI	GCATC	5 cut(s)	1063, 1300, 1626, 1633, 2556
SfcI	CTRYAG	5 cut(s)	806, 2053, 2389, 3013, 3057
Sfr274I	CTCGAG	1 cut(s)	2126
SfuI	TTCGAA	2 cut(s)	1113, 1671
SinI	GGWCC	1 cut(s)	983
SlaI	CTCGAG	1 cut(s)	2126
SmiMI	CAYNNNNRTG	5 cut(s)	271, 562, 2975, 3069, 3084
SmlI	CTYRAG	8 cut(s)	76, 1088, 1173, 2018, 2035, 2086, 2126, 2164
SmoI	CTYRAG	8 cut(s)	76, 1088, 1173, 2018, 2035, 2086, 2126, 2164
SphI	GCATGC	2 cut(s)	1109, 2936
SsiI	CCGC	1 cut(s)	2899
SspI	AATATT	1 cut(s)	1395
StyD4I	CCNGG	8 cut(s)	432, 985, 1534, 1768, 1807, 2692, 2827, 3018
StyI	CCWWGG	1 cut(s)	3172
TaaI	ACNGT	7 cut(s)	107, 948, 1198, 2821, 2863, 3032, 3222
TaiI	ACGT	5 cut(s)	275, 864, 1546, 1642, 3078
TaqI	TCGA	9 cut(s)	642, 1039, 1113, 1671, 2127, 2577, 2674, 3112, 3224
TatI	WGTACW	5 cut(s)	5, 123, 1423, 1579, 1979
TscAI	CASTG	4 cut(s)	1968, 2866, 3017, 3037
TseFI	GTSAC	3 cut(s)	853, 1192, 2855
TseI	GCWGC	8 cut(s)	200, 458, 473, 1756, 2220, 3015, 3139, 3197
Tsp45I	GTSAC	3 cut(s)	853, 1192, 2855
TspGWI	ACGGA	2 cut(s)	1817, 2610
TspRI	CASTG	4 cut(s)	1968, 2866, 3017, 3037
Vha464I	CTTAAG	1 cut(s)	2164
VpaK11BI	GGWCC	1 cut(s)	983
VspI	ATTAAT	1 cut(s)	2106
XbaI	TCTAGA	1 cut(s)	2305
XceI	RCATGY	4 cut(s)	1109, 1356, 2739, 2936
XhoI	CTCGAG	1 cut(s)	2126
XmiI	GTMKAC	2 cut(s)	2056, 2593
XmnI	GAANNNNTTC	1 cut(s)	604
ZrmI	AGTACT	2 cut(s)	7, 1425
Zsp2I	ATGCAT	2 cut(s)	1479, 2549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.