pycom13g12090

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0021274
Physical Location & Seq
Reverse (-)
8360802 .. 8362941
2140 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g12090.3

Sequence Viewer

Length: 1251 bp
ATGGCTGCCTCTCCTGTGGTTAATGCACGGTCCCCTACATGGTATACCGACAGTGGCGCATCGTCACACATCACCAATGATTTAGCTAATTTGAGCCTCTCCACAGAATATATTGGCCAAGACCAAGTTGCGGTTGGTAATGGTGCAGGTTTGTCTATAAAGCATATTGGTTCCGGTTTCGTGTCTCAATTTCCTTTAAATTCTGTGTTGCATTGTCCTTCTGCTTCTGCTAATCTACTGAGCGTTCATCGCTTTTGTTATGATAATCATTGCTACTTCATTTTCACTCCTACTGATTTCTTTGTGAAGGATCTATCCACGGGGAAGACGCTTTTCCACGGCAAGAGTGAGAATGGATTGTATCCGTTTCGTGGCTATCGTTGTTATGATATGTCAAATGGACGAGTTTATTTGTCACGTCATGTGGTTTTTGATGAGGAAACTTTTCCATTTGACAACCCTACACAATTCTCCTCAGTCTTGCCGTCAGAAGCTTACTCTCCCGTGGTTATCACTCCTTCTCCTTTACCACCTCTCCCTCAGGTACCTTCATCATCTCATATTTCTATTCCTCATACTCTAACATCCTCTTCTAGTGCAGCACCTCTCTTCCCCTTGCAACCTTCCTCAAGTTCACCATTGTCTACACCTTCACTTTCCTCGCCACCTCATTCTCAACCTGCTCCTGATAGCTCTGACAGTTTGATTTCCATTAATGAGGCTCCTCCACCTTCCTCCGCTTCTGCTCTCTATCCCATGCTCACTCGGTCTAAATCTGGCATTCGAAAACCAAACCCCAAATATGCTTTATTGACATCATTACAAGCTCCTGATTCTAAACCAACCTCGTTTCGCGAGGCAAATCAATTATCTCATTGGCGTGATGCAATGACATTGGAGTTTAAGGCCTTGAAAGCTTCTGGTACATGGGAGTTGGTACCTTCTTCAACTGCTACTCATGTTCTTCCTTGCAAGTGGGTCTATCGCACAAAGCGGAAATCTGCCGGTACAGTGGAGCGATATAAAGCTCGTCTTGTTGCCAATGGATTTCATCAAACGATGGGTGTTGATTACACGGAGACGTTTAGTCCGGTGGTTAAGCATGTCACCATTCGTCTGGTTCTTGCCCTTGCAGTTTCTTATAGTTGGCCTATACGCCAACTTGATGTCCAAAATGCGTTTTTGCACGGGAATCTCTCTGAAGAAGTTTTCATGAAACAACCACGTGGTTTTGAAGACCCCAAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3

Protein Analysis

417

Amino Acids

45.51

Weight (kDa)

8.67

Isoelectric Point (pI)

50.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021274)

Species Orthologous Gene IDs
pyrus_communis pycom11g04700 pycom13g12090 pycom14g19030 pycom16g20010
rosa_wichuraiana Rw6G007970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 137, 688
Acc65I GGTACC 2 cut(s) 544, 937
AccB1I GGYRCC 2 cut(s) 544, 937
AccI GTMKAC 2 cut(s) 44, 644
AccII CGCG 1 cut(s) 855
AciI CCGC 3 cut(s) 131, 738, 994
AclWI GGATC 1 cut(s) 318
AcoI YGGCCR 1 cut(s) 115
AcsI RAATTY 1 cut(s) 199
AcuI CTGAAG 1 cut(s) 1221
AcvI CACGTG 1 cut(s) 1226
AfaI GTAC 4 cut(s) 546, 925, 939, 1009
AfiI CCNNNNNNNGG 3 cut(s) 39, 130, 371
AgsI TTSAA 3 cut(s) 913, 948, 1235
AhdI GACNNNNNGTC 1 cut(s) 1086
AjiI CACGTC 1 cut(s) 419
AluBI AGCT 6 cut(s) 86, 494, 693, 827, 917, 1028
AluI AGCT 6 cut(s) 86, 494, 693, 827, 917, 1028
Alw26I GTCTC 2 cut(s) 189, 1073
AlwI GGATC 1 cut(s) 318
AoxI GGCC 3 cut(s) 115, 906, 1148
ApeKI GCWGC 2 cut(s) 5, 599
ApoI RAATTY 1 cut(s) 199
AseI ATTAAT 1 cut(s) 714
Asp700I GAANNNNTTC 1 cut(s) 444
Asp718I GGTACC 2 cut(s) 544, 937
AspLEI GCGC 1 cut(s) 59
AspS9I GGNCC 1 cut(s) 30
AsuHPI GGTGA 3 cut(s) 64, 627, 1099
AsuII TTCGAA 1 cut(s) 784
AvaII GGWCC 1 cut(s) 30
AxyI CCTNAGG 1 cut(s) 540
BalI TGGCCA 1 cut(s) 117
BanI GGYRCC 2 cut(s) 544, 937
BbrPI CACGTG 1 cut(s) 1226
BbsI GAAGAC 2 cut(s) 332, 1242
BbvI GCAGC 1 cut(s) 611
BccI CCATC 1 cut(s) 1054
BceAI ACGGC 2 cut(s) 355, 469
BciVI GTATCC 1 cut(s) 372
BcoDI GTCTC 2 cut(s) 189, 1073
BfaI CTAG 1 cut(s) 594
BfuAI ACCTGC 2 cut(s) 137, 688
BfuI GTATCC 1 cut(s) 372
BisI GCNGC 2 cut(s) 6, 600
BlsI GCNGC 2 cut(s) 7, 601
Bme18I GGWCC 1 cut(s) 30
BmeRI GACNNNNNGTC 1 cut(s) 1086
BmgBI CACGTC 1 cut(s) 419
BmgT120I GGNCC 1 cut(s) 30
BmiI GGNNCC 5 cut(s) 32, 172, 546, 723, 939
BmsI GCATC 2 cut(s) 68, 874
BpiI GAAGAC 2 cut(s) 332, 1242
Bpu14I TTCGAA 1 cut(s) 784
BpuEI CTTGAG 1 cut(s) 613
BsaAI YACGTR 1 cut(s) 1226
BsaJI CCNNGG 4 cut(s) 318, 337, 504, 1242
BsaWI WCCGGW 2 cut(s) 173, 1090
BsaXI ACNNNNNCTCC 4 cut(s) 505, 519, 535, 549
Bsc4I CCNNNNNNNGG 3 cut(s) 39, 130, 371
Bse118I RCCGGY 1 cut(s) 1004
Bse21I CCTNAGG 1 cut(s) 540
Bse3DI GCAATG 2 cut(s) 268, 894
BseDI CCNNGG 4 cut(s) 318, 337, 504, 1242
BseGI GGATG 1 cut(s) 584
BseLI CCNNNNNNNGG 3 cut(s) 39, 130, 371
BseMI GCAATG 2 cut(s) 268, 894
BseMII CTCAG 3 cut(s) 230, 489, 554
BseRI GAGGAG 2 cut(s) 463, 714
BseXI GCAGC 1 cut(s) 611
BsgI GTGCAG 2 cut(s) 165, 618
Bsh1236I CGCG 1 cut(s) 855
BshFI GGCC 3 cut(s) 117, 908, 1150
BshNI GGYRCC 2 cut(s) 544, 937
BsiSI CCGG 3 cut(s) 174, 1005, 1091
BslFI GGGAC 1 cut(s) 16
BslI CCNNNNNNNGG 3 cut(s) 39, 130, 371
BsmAI GTCTC 2 cut(s) 189, 1073
BsmBI CGTCTC 1 cut(s) 1073
BsmFI GGGAC 1 cut(s) 16
BsmI GAATGC 1 cut(s) 780
BsnI GGCC 3 cut(s) 117, 908, 1150
Bsp119I TTCGAA 1 cut(s) 784
Bsp143I GATC 1 cut(s) 310
Bsp68I TCGCGA 1 cut(s) 855
BspACI CCGC 3 cut(s) 131, 738, 994
BspANI GGCC 3 cut(s) 117, 908, 1150
BspCNI CTCAG 3 cut(s) 231, 488, 553
BspFNI CGCG 1 cut(s) 855
BspHI TCATGA 1 cut(s) 1212
BspLI GGNNCC 5 cut(s) 32, 172, 546, 723, 939
BspMI ACCTGC 2 cut(s) 137, 688
BspPI GGATC 1 cut(s) 318
BspT104I TTCGAA 1 cut(s) 784
BspT107I GGYRCC 2 cut(s) 544, 937
BsrDI GCAATG 2 cut(s) 268, 894
BsrFI RCCGGY 1 cut(s) 1004
BssAI RCCGGY 1 cut(s) 1004
BssECI CCNNGG 4 cut(s) 318, 337, 504, 1242
BssMI GATC 1 cut(s) 310
BssNAI GTATAC 1 cut(s) 45
BssT1I CCWWGG 1 cut(s) 1242
Bst1107I GTATAC 1 cut(s) 45
Bst4CI ACNGT 4 cut(s) 30, 53, 701, 1012
Bst6I CTCTTC 2 cut(s) 595, 614
BstBAI YACGTR 1 cut(s) 1226
BstBI TTCGAA 1 cut(s) 784
BstDEI CTNAG 3 cut(s) 239, 475, 540
BstDSI CCRYGG 3 cut(s) 318, 337, 504
BstF5I GGATG 1 cut(s) 584
BstFNI CGCG 1 cut(s) 855
BstHHI GCGC 1 cut(s) 59
BstKTI GATC 1 cut(s) 313
BstMAI GTCTC 2 cut(s) 189, 1073
BstMBI GATC 1 cut(s) 310
BstMWI GCNNNNNNNGC 2 cut(s) 249, 914
BstNSI RCATGY 1 cut(s) 1106
BstUI CGCG 1 cut(s) 855
BstV1I GCAGC 1 cut(s) 611
BstV2I GAAGAC 2 cut(s) 332, 1242
BstX2I RGATCY 1 cut(s) 310
BstXI CCANNNNNNTGG 1 cut(s) 1117
BstYI RGATCY 1 cut(s) 310
BstZ17I GTATAC 1 cut(s) 45
Bsu36I CCTNAGG 1 cut(s) 540
BsuI GTATCC 1 cut(s) 372
BsuRI GGCC 3 cut(s) 117, 908, 1150
BtgI CCRYGG 3 cut(s) 318, 337, 504
BtgZI GCGATG 1 cut(s) 233
BtrI CACGTC 1 cut(s) 419
BtsCI GGATG 1 cut(s) 584
BtsIMutI CAGTG 2 cut(s) 58, 1017
BtuMI TCGCGA 1 cut(s) 855
BveI ACCTGC 2 cut(s) 137, 688
CciI TCATGA 1 cut(s) 1212
CfoI GCGC 1 cut(s) 59
Cfr10I RCCGGY 1 cut(s) 1004
Cfr13I GGNCC 1 cut(s) 30
CseI GACGC 1 cut(s) 337
Csp6I GTAC 4 cut(s) 545, 924, 938, 1008
CviAII CATG 7 cut(s) 39, 422, 757, 927, 959, 1103, 1213
CviQI GTAC 4 cut(s) 545, 924, 938, 1008
DdeI CTNAG 3 cut(s) 239, 475, 540
DpnI GATC 1 cut(s) 312
DpnII GATC 1 cut(s) 310
DraI TTTAAA 1 cut(s) 198
DriI GACNNNNNGTC 1 cut(s) 1086
EaeI YGGCCR 1 cut(s) 115
Eam1104I CTCTTC 2 cut(s) 595, 614
Eam1105I GACNNNNNGTC 1 cut(s) 1086
EarI CTCTTC 2 cut(s) 595, 614
Eco130I CCWWGG 1 cut(s) 1242
Eco147I AGGCCT 1 cut(s) 908
Eco47I GGWCC 1 cut(s) 30
Eco57I CTGAAG 1 cut(s) 1221
Eco72I CACGTG 1 cut(s) 1226
Eco81I CCTNAGG 1 cut(s) 540
EcoT14I CCWWGG 1 cut(s) 1242
ErhI CCWWGG 1 cut(s) 1242
Esp3I CGTCTC 1 cut(s) 1073
FaeI CATG 7 cut(s) 42, 425, 760, 930, 962, 1106, 1216
FalI AAGNNNNNCTT 2 cut(s) 1017, 1049
FaqI GGGAC 1 cut(s) 16
FatI CATG 7 cut(s) 38, 421, 756, 926, 958, 1102, 1212
FblI GTMKAC 2 cut(s) 44, 644
Fnu4HI GCNGC 2 cut(s) 6, 600
FokI GGATG 1 cut(s) 571
Fsp4HI GCNGC 2 cut(s) 6, 600
FspBI CTAG 1 cut(s) 594
GlaI GCGC 1 cut(s) 58
GluI GCNGC 2 cut(s) 6, 600
HaeIII GGCC 3 cut(s) 117, 908, 1150
HapII CCGG 3 cut(s) 174, 1005, 1091
HgaI GACGC 1 cut(s) 337
HhaI GCGC 1 cut(s) 59
Hin1II CATG 7 cut(s) 42, 425, 760, 930, 962, 1106, 1216
Hin6I GCGC 1 cut(s) 57
HinP1I GCGC 1 cut(s) 57
HindIII AAGCTT 2 cut(s) 492, 915
HinfI GANTC 2 cut(s) 833, 1192
HpaII CCGG 3 cut(s) 174, 1005, 1091
HphI GGTGA 3 cut(s) 64, 627, 1099
Hpy166II GTNNAC 3 cut(s) 45, 635, 645
Hpy188I TCNGA 3 cut(s) 490, 697, 1201
Hpy188III TCNNGA 4 cut(s) 686, 830, 854, 1213
Hpy8I GTNNAC 3 cut(s) 45, 635, 645
HpyAV CCTTC 8 cut(s) 228, 301, 528, 558, 633, 660, 741, 951
HpyCH4III ACNGT 4 cut(s) 30, 53, 701, 1012
HpyCH4IV ACGT 3 cut(s) 418, 1082, 1225
HpyCH4V TGCA 9 cut(s) 26, 146, 211, 599, 619, 887, 972, 1133, 1186
HpyF10VI GCNNNNNNNGC 2 cut(s) 249, 914
HpyF3I CTNAG 3 cut(s) 239, 475, 540
HpySE526I ACGT 3 cut(s) 418, 1082, 1225
Hsp92II CATG 7 cut(s) 42, 425, 760, 930, 962, 1106, 1216
HspAI GCGC 1 cut(s) 57
KpnI GGTACC 2 cut(s) 548, 941
Kzo9I GATC 1 cut(s) 310
LmnI GCTCC 4 cut(s) 688, 727, 832, 1015
Lsp1109I GCAGC 1 cut(s) 611
LweI GCATC 2 cut(s) 68, 874
MaeI CTAG 1 cut(s) 594
MaeII ACGT 3 cut(s) 418, 1082, 1225
MaeIII GTNAC 3 cut(s) 63, 414, 1105
MalI GATC 1 cut(s) 312
MboI GATC 1 cut(s) 310
MboII GAAGA 7 cut(s) 337, 582, 601, 936, 956, 1214, 1247
MflI RGATCY 1 cut(s) 310
MlsI TGGCCA 1 cut(s) 117
MluCI AATT 5 cut(s) 88, 188, 199, 467, 866
MluNI TGGCCA 1 cut(s) 117
Mox20I TGGCCA 1 cut(s) 117
MroXI GAANNNNTTC 1 cut(s) 444
MscI TGGCCA 1 cut(s) 117
MseI TTAA 5 cut(s) 21, 197, 714, 903, 1098
MslI CAYNNNNRTG 1 cut(s) 879
Msp20I TGGCCA 1 cut(s) 117
MspI CCGG 3 cut(s) 174, 1005, 1091
Mva1269I GAATGC 1 cut(s) 780
MvnI CGCG 1 cut(s) 855
MwoI GCNNNNNNNGC 2 cut(s) 249, 914
NdeII GATC 1 cut(s) 310
NlaIII CATG 7 cut(s) 42, 425, 760, 930, 962, 1106, 1216
NlaIV GGNNCC 5 cut(s) 32, 172, 546, 723, 939
NmuCI GTSAC 3 cut(s) 63, 414, 1105
NruI TCGCGA 1 cut(s) 855
NspI RCATGY 1 cut(s) 1106
NspV TTCGAA 1 cut(s) 784
PagI TCATGA 1 cut(s) 1212
PceI AGGCCT 1 cut(s) 908
PcsI WCGNNNNNNNCGW 1 cut(s) 376
PctI GAATGC 1 cut(s) 780
PdmI GAANNNNTTC 1 cut(s) 444
PfeI GAWTC 2 cut(s) 833, 1192
PkrI GCNGC 2 cut(s) 7, 601
PmaCI CACGTG 1 cut(s) 1226
PmlI CACGTG 1 cut(s) 1226
Ppu21I YACGTR 1 cut(s) 1226
PshBI ATTAAT 1 cut(s) 714
PspCI CACGTG 1 cut(s) 1226
PspN4I GGNNCC 5 cut(s) 32, 172, 546, 723, 939
PspPI GGNCC 1 cut(s) 30
PsuI RGATCY 1 cut(s) 310
RruI TCGCGA 1 cut(s) 855
RsaI GTAC 4 cut(s) 546, 925, 939, 1009
RsaNI GTAC 4 cut(s) 545, 924, 938, 1008
RseI CAYNNNNRTG 1 cut(s) 879
SaqAI TTAA 5 cut(s) 21, 197, 714, 903, 1098
SatI GCNGC 2 cut(s) 6, 600
Sau3AI GATC 1 cut(s) 310
Sau96I GGNCC 1 cut(s) 30
SfaNI GCATC 2 cut(s) 68, 874
SfuI TTCGAA 1 cut(s) 784
SinI GGWCC 1 cut(s) 30
SmiMI CAYNNNNRTG 1 cut(s) 879
SmlI CTYRAG 1 cut(s) 628
SmoI CTYRAG 1 cut(s) 628
Sse9I AATT 5 cut(s) 88, 188, 199, 467, 866
SseBI AGGCCT 1 cut(s) 908
SsiI CCGC 3 cut(s) 131, 738, 994
SspMI CTAG 1 cut(s) 594
StuI AGGCCT 1 cut(s) 908
StyI CCWWGG 1 cut(s) 1242
TaaI ACNGT 4 cut(s) 30, 53, 701, 1012
TaiI ACGT 3 cut(s) 421, 1085, 1228
TaqI TCGA 1 cut(s) 784
TaqII GACCGA 1 cut(s) 756
TasI AATT 5 cut(s) 88, 188, 199, 467, 866
TfiI GAWTC 2 cut(s) 833, 1192
Tru1I TTAA 5 cut(s) 21, 197, 714, 903, 1098
Tru9I TTAA 5 cut(s) 21, 197, 714, 903, 1098
TscAI CASTG 2 cut(s) 58, 1017
TseFI GTSAC 3 cut(s) 63, 414, 1105
TseI GCWGC 2 cut(s) 5, 599
Tsp45I GTSAC 3 cut(s) 63, 414, 1105
TspDTI ATGAA 6 cut(s) 236, 268, 540, 1040, 1201, 1229
TspGWI ACGGA 2 cut(s) 354, 1091
TspRI CASTG 2 cut(s) 58, 1017
VpaK11BI GGWCC 1 cut(s) 30
VspI ATTAAT 1 cut(s) 714
XapI RAATTY 1 cut(s) 199
XceI RCATGY 1 cut(s) 1106
XcmI CCANNNNNNNNNTGG 1 cut(s) 131
XmiI GTMKAC 2 cut(s) 44, 644
XmnI GAANNNNTTC 1 cut(s) 444
XspI CTAG 1 cut(s) 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.