Rw6G007970

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0021274
Physical Location & Seq
Reverse (-)
13495182 .. 13496003
822 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G007970.1

Sequence Viewer

Length: 480 bp
ATGTGTTCTGAATTCAATGCACTACAGAAAAGTGGTATATGGAAGCTTGTTCCAGCTCATCCCACTATGAATATTCTCCCTTGCAAGTGGGTGTTCCGCACTAAAAAGAAGGCAGATGGCAGTATTGAGTGTTATAAGGCTCGCTTAGTAGCAAATGGGTTTCATCAGCAAGAAGGTGTTGATTTTTCTGAAACCTTCAGCCCGGTCATCAAGCATACTACCATTCGACTTATCATTGCTCTTGCCGTTCATCACAAGTGGCCTATACGCCAACTCGATGTTCAGAACGCATTTCTGAATGGATATCTCACTGAAGACGTGCAATCACATGGTCTCTCTCTTACTCAAACAAAGTATGTCACTGATCTTTTGAAACGCACAAACATGTTGGATGCCAGGCCTCTCTCTTCTCCGGCAGCAAGTGGAAAGCGCCTCAGTATTCATGAGGGTACCTTACTTTCAGATCCAACTCAGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3

Protein Analysis

159

Amino Acids

17.92

Weight (kDa)

9.35

Isoelectric Point (pI)

40.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 13 - 107 1.8e-25 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021274)

Species Orthologous Gene IDs
pyrus_communis pycom11g04700 pycom13g12090 pycom14g19030 pycom16g20010
rosa_wichuraiana Rw6G007970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 135
Acc65I GGTACC 1 cut(s) 449
AccB1I GGYRCC 1 cut(s) 449
AciI CCGC 1 cut(s) 97
AclWI GGATC 1 cut(s) 458
AcsI RAATTY 1 cut(s) 11
AcuI CTGAAG 2 cut(s) 181, 333
AfaI GTAC 1 cut(s) 451
AflIII ACRYGT 1 cut(s) 384
AgsI TTSAA 2 cut(s) 16, 373
AjiI CACGTC 1 cut(s) 319
AjnI CCWGG 1 cut(s) 395
AjuI GAANNNNNNNTTGG 2 cut(s) 264, 296
AluBI AGCT 2 cut(s) 46, 56
AluI AGCT 2 cut(s) 46, 56
Alw26I GTCTC 1 cut(s) 338
AlwI GGATC 1 cut(s) 458
AoxI GGCC 2 cut(s) 260, 398
ApeKI GCWGC 1 cut(s) 416
ApoI RAATTY 1 cut(s) 11
Asp718I GGTACC 1 cut(s) 449
AspLEI GCGC 1 cut(s) 432
AsuC2I CCSGG 1 cut(s) 203
BanI GGYRCC 1 cut(s) 449
BbsI GAAGAC 1 cut(s) 321
BbvI GCAGC 1 cut(s) 428
BccI CCATC 1 cut(s) 110
BceAI ACGGC 1 cut(s) 230
BciT130I CCWGG 1 cut(s) 397
BcnI CCSGG 1 cut(s) 203
BcoDI GTCTC 1 cut(s) 338
BfmI CTRYAG 1 cut(s) 23
BfoI RGCGCY 1 cut(s) 433
BisI GCNGC 1 cut(s) 417
BlsI GCNGC 1 cut(s) 418
Bme1390I CCNGG 2 cut(s) 203, 397
BmgBI CACGTC 1 cut(s) 319
BmiI GGNNCC 1 cut(s) 451
BmrFI CCNGG 2 cut(s) 203, 397
BmsI GCATC 1 cut(s) 382
BpiI GAAGAC 1 cut(s) 321
BpuMI CCSGG 1 cut(s) 203
BsaI GGTCTC 1 cut(s) 338
Bse3DI GCAATG 1 cut(s) 234
BseBI CCWGG 1 cut(s) 397
BseGI GGATG 2 cut(s) 58, 397
BseMI GCAATG 1 cut(s) 234
BseMII CTCAG 1 cut(s) 448
BseXI GCAGC 1 cut(s) 428
BshFI GGCC 2 cut(s) 262, 400
BshNI GGYRCC 1 cut(s) 449
BsiSI CCGG 2 cut(s) 203, 413
BsmAI GTCTC 1 cut(s) 338
BsnI GGCC 2 cut(s) 262, 400
Bso31I GGTCTC 1 cut(s) 338
Bsp143I GATC 2 cut(s) 364, 463
BspACI CCGC 1 cut(s) 97
BspANI GGCC 2 cut(s) 262, 400
BspCNI CTCAG 1 cut(s) 447
BspHI TCATGA 1 cut(s) 442
BspLI GGNNCC 1 cut(s) 451
BspPI GGATC 1 cut(s) 458
BspT107I GGYRCC 1 cut(s) 449
BspTNI GGTCTC 1 cut(s) 338
BsrDI GCAATG 1 cut(s) 234
BssMI GATC 2 cut(s) 364, 463
Bst2UI CCWGG 1 cut(s) 397
Bst6I CTCTTC 1 cut(s) 412
BstC8I GCNNGC 1 cut(s) 142
BstDEI CTNAG 3 cut(s) 145, 434, 471
BstF5I GGATG 2 cut(s) 58, 397
BstH2I RGCGCY 1 cut(s) 433
BstHHI GCGC 1 cut(s) 432
BstKTI GATC 2 cut(s) 367, 466
BstMAI GTCTC 1 cut(s) 338
BstMBI GATC 2 cut(s) 364, 463
BstNI CCWGG 1 cut(s) 397
BstNSI RCATGY 1 cut(s) 388
BstSCI CCNGG 2 cut(s) 201, 395
BstSFI CTRYAG 1 cut(s) 23
BstV1I GCAGC 1 cut(s) 428
BstV2I GAAGAC 1 cut(s) 321
BstX2I RGATCY 1 cut(s) 463
BstYI RGATCY 1 cut(s) 463
BsuRI GGCC 2 cut(s) 262, 400
BtrI CACGTC 1 cut(s) 319
BtsCI GGATG 2 cut(s) 58, 397
BtsIMutI CAGTG 2 cut(s) 309, 360
Cac8I GCNNGC 1 cut(s) 142
CciI TCATGA 1 cut(s) 442
CfoI GCGC 1 cut(s) 432
Csp6I GTAC 1 cut(s) 450
CviAII CATG 3 cut(s) 329, 385, 443
CviJI RGCY 6 cut(s) 46, 56, 140, 201, 262, 400
CviKI_1 RGCY 6 cut(s) 46, 56, 140, 201, 262, 400
CviQI GTAC 1 cut(s) 450
DdeI CTNAG 3 cut(s) 145, 434, 471
DpnI GATC 2 cut(s) 366, 465
DpnII GATC 2 cut(s) 364, 463
Eam1104I CTCTTC 1 cut(s) 412
EarI CTCTTC 1 cut(s) 412
Eco147I AGGCCT 1 cut(s) 400
Eco31I GGTCTC 1 cut(s) 338
Eco32I GATATC 1 cut(s) 305
Eco57I CTGAAG 2 cut(s) 181, 333
EcoRI GAATTC 1 cut(s) 11
EcoRII CCWGG 1 cut(s) 395
EcoRV GATATC 1 cut(s) 305
FaeI CATG 3 cut(s) 332, 388, 446
FalI AAGNNNNNCTT 2 cut(s) 128, 160
FatI CATG 3 cut(s) 328, 384, 442
Fnu4HI GCNGC 1 cut(s) 417
FokI GGATG 2 cut(s) 45, 404
Fsp4HI GCNGC 1 cut(s) 417
GlaI GCGC 1 cut(s) 431
GluI GCNGC 1 cut(s) 417
HaeII RGCGCY 1 cut(s) 433
HaeIII GGCC 2 cut(s) 262, 400
HapII CCGG 2 cut(s) 203, 413
HhaI GCGC 1 cut(s) 432
Hin1II CATG 3 cut(s) 332, 388, 446
Hin6I GCGC 1 cut(s) 430
HinP1I GCGC 1 cut(s) 430
HindIII AAGCTT 1 cut(s) 44
HpaII CCGG 2 cut(s) 203, 413
Hpy188I TCNGA 5 cut(s) 10, 190, 285, 297, 463
Hpy188III TCNNGA 1 cut(s) 443
HpyAV CCTTC 3 cut(s) 103, 167, 205
HpyCH4IV ACGT 1 cut(s) 318
HpyCH4V TGCA 3 cut(s) 20, 84, 322
HpyF3I CTNAG 3 cut(s) 145, 434, 471
HpySE526I ACGT 1 cut(s) 318
Hsp92II CATG 3 cut(s) 332, 388, 446
HspAI GCGC 1 cut(s) 430
KpnI GGTACC 1 cut(s) 453
Kzo9I GATC 2 cut(s) 364, 463
LpnPI CCDG 5 cut(s) 66, 216, 382, 409, 426
Lsp1109I GCAGC 1 cut(s) 428
LweI GCATC 1 cut(s) 382
MaeII ACGT 1 cut(s) 318
MaeIII GTNAC 1 cut(s) 358
MalI GATC 2 cut(s) 366, 465
MboI GATC 2 cut(s) 364, 463
MboII GAAGA 2 cut(s) 326, 399
MflI RGATCY 1 cut(s) 463
MluCI AATT 1 cut(s) 11
MmeI TCCRAC 1 cut(s) 369
MnlI CCTC 3 cut(s) 411, 439, 443
MslI CAYNNNNRTG 1 cut(s) 383
MspI CCGG 2 cut(s) 203, 413
MspR9I CCNGG 2 cut(s) 203, 397
MvaI CCWGG 1 cut(s) 397
NciI CCSGG 1 cut(s) 203
NdeII GATC 2 cut(s) 364, 463
NlaIII CATG 3 cut(s) 332, 388, 446
NlaIV GGNNCC 1 cut(s) 451
NmuCI GTSAC 1 cut(s) 358
NspI RCATGY 1 cut(s) 388
PagI TCATGA 1 cut(s) 442
PceI AGGCCT 1 cut(s) 400
PciI ACATGT 1 cut(s) 384
PkrI GCNGC 1 cut(s) 418
PscI ACATGT 1 cut(s) 384
PsiI TTATAA 1 cut(s) 135
Psp6I CCWGG 1 cut(s) 395
PspGI CCWGG 1 cut(s) 395
PspN4I GGNNCC 1 cut(s) 451
PsuI RGATCY 1 cut(s) 463
RsaI GTAC 1 cut(s) 451
RsaNI GTAC 1 cut(s) 450
RseI CAYNNNNRTG 1 cut(s) 383
SatI GCNGC 1 cut(s) 417
Sau3AI GATC 2 cut(s) 364, 463
ScrFI CCNGG 2 cut(s) 203, 397
SetI ASST 6 cut(s) 48, 58, 178, 197, 321, 455
SfaNI GCATC 1 cut(s) 382
SfcI CTRYAG 1 cut(s) 23
SmiMI CAYNNNNRTG 1 cut(s) 383
Sse9I AATT 1 cut(s) 11
SseBI AGGCCT 1 cut(s) 400
SsiI CCGC 1 cut(s) 97
SspI AATATT 1 cut(s) 73
StuI AGGCCT 1 cut(s) 400
StyD4I CCNGG 2 cut(s) 201, 395
TaiI ACGT 1 cut(s) 321
TaqI TCGA 2 cut(s) 226, 276
TasI AATT 1 cut(s) 11
TscAI CASTG 2 cut(s) 316, 367
TseFI GTSAC 1 cut(s) 358
TseI GCWGC 1 cut(s) 416
Tsp45I GTSAC 1 cut(s) 358
TspDTI ATGAA 4 cut(s) 83, 152, 239, 431
TspRI CASTG 2 cut(s) 316, 367
XapI RAATTY 1 cut(s) 11
XceI RCATGY 1 cut(s) 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.