pycom13g16560

Belongs to the cysteine synthase cystathionine beta- synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0022423
Physical Location & Seq
Forward (+)
12367598 .. 12368435
838 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 237 bp
ATGGCCGTTGAGAAGGCCGGCATCGCCAAAGATGTCACTGAATTAATTGGAAAGACCCCGTTGGTGTATCTGAACCATGTCGTGGAAGGTTGTGTTGCTCGTATTGCTGCCAAATTGGAAATGATGGAGCCCTGCTCCAGTGTAAAAGACAGGATTGGTTATAGCATGATTGCAGATGCTGAGGCGAAGGGCCTTATCACACCTGGACAGTGTCCTCATCGAGCCAACAAGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000096 GO:0000097 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005777 GO:0005829 GO:0005886 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0007568 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009532 GO:0009536 GO:0009566 GO:0009567 GO:0009570 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016043 GO:0016049 GO:0016053 GO:0016740 GO:0016765 GO:0019344 GO:0019752 GO:0019842 GO:0019953 GO:0022414 GO:0030154 GO:0030170 GO:0031090 GO:0032501 GO:0032502 GO:0032989 GO:0036094 GO:0040007 GO:0042221 GO:0042579 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044706 GO:0046394 GO:0046686 GO:0048037 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050662 GO:0050896 GO:0051704 GO:0060560 GO:0070279 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607
KEGG Pathways
Metabolic & Signaling
ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PALP

Protein Analysis

79

Amino Acids

8.43

Weight (kDa)

7.72

Isoelectric Point (pI)

11.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 12 - 63 1e-08 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0022423)

Species Orthologous Gene IDs
malus_domestica MD05G1261300.v1.1
pyrus_communis pycom13g16560
rosa_chinensis RchiOBHm_Chr3g0452921
rosa_multiflora Rmu_co8184688.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 82, 231
AcoI YGGCCR 1 cut(s) 3
AfiI CCNNNNNNNGG 2 cut(s) 82, 231
AjnI CCWGG 1 cut(s) 202
AlwNI CAGNNNCTG 1 cut(s) 179
AoxI GGCC 3 cut(s) 3, 15, 190
ApeKI GCWGC 1 cut(s) 107
AseI ATTAAT 1 cut(s) 44
AspS9I GGNCC 1 cut(s) 190
BanII GRGCYC 1 cut(s) 132
BbvCI CCTCAGC 1 cut(s) 180
BbvI GCAGC 1 cut(s) 94
BccI CCATC 1 cut(s) 118
BciT130I CCWGG 1 cut(s) 204
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
Bme1390I CCNGG 1 cut(s) 204
BmgT120I GGNCC 1 cut(s) 190
BmiI GGNNCC 1 cut(s) 129
BmrFI CCNGG 1 cut(s) 204
BmsI GCATC 2 cut(s) 30, 166
BplI GAGNNNNNCTC 2 cut(s) 119, 151
BpmI CTGGAG 1 cut(s) 121
Bpu10I CCTNAGC 1 cut(s) 180
Bsc4I CCNNNNNNNGG 2 cut(s) 82, 231
Bse118I RCCGGY 1 cut(s) 17
Bse1I ACTGG 1 cut(s) 138
BseBI CCWGG 1 cut(s) 204
BseLI CCNNNNNNNGG 2 cut(s) 82, 231
BseMII CTCAG 1 cut(s) 171
BseNI ACTGG 1 cut(s) 138
BseXI GCAGC 1 cut(s) 94
BshFI GGCC 3 cut(s) 5, 17, 192
BsiSI CCGG 1 cut(s) 18
BslI CCNNNNNNNGG 2 cut(s) 82, 231
BsnI GGCC 3 cut(s) 5, 17, 192
Bsp1286I GDGCHC 1 cut(s) 132
BspANI GGCC 3 cut(s) 5, 17, 192
BspCNI CTCAG 1 cut(s) 172
BspLI GGNNCC 1 cut(s) 129
BsrFI RCCGGY 1 cut(s) 17
BsrI ACTGG 1 cut(s) 138
BssAI RCCGGY 1 cut(s) 17
Bst2UI CCWGG 1 cut(s) 204
Bst4CI ACNGT 1 cut(s) 210
BstC8I GCNNGC 1 cut(s) 19
BstDEI CTNAG 1 cut(s) 180
BstMWI GCNNNNNNNGC 2 cut(s) 23, 104
BstNI CCWGG 1 cut(s) 204
BstSCI CCNGG 1 cut(s) 202
BstV1I GCAGC 1 cut(s) 94
BsuRI GGCC 3 cut(s) 5, 17, 192
BtgZI GCGATG 1 cut(s) 7
BtsIMutI CAGTG 3 cut(s) 36, 145, 215
Cac8I GCNNGC 1 cut(s) 19
CaiI CAGNNNCTG 1 cut(s) 179
Cfr10I RCCGGY 1 cut(s) 17
Cfr13I GGNCC 1 cut(s) 190
CviAII CATG 2 cut(s) 77, 166
CviJI RGCY 5 cut(s) 5, 17, 130, 192, 224
CviKI_1 RGCY 5 cut(s) 5, 17, 130, 192, 224
DdeI CTNAG 1 cut(s) 180
EaeI YGGCCR 1 cut(s) 3
Eco24I GRGCYC 1 cut(s) 132
EcoO109I RGGNCCY 1 cut(s) 190
EcoRII CCWGG 1 cut(s) 202
EcoT38I GRGCYC 1 cut(s) 132
FaeI CATG 2 cut(s) 80, 169
FaiI YATR 3 cut(s) 78, 162, 167
FatI CATG 2 cut(s) 76, 165
Fnu4HI GCNGC 1 cut(s) 108
FriOI GRGCYC 1 cut(s) 132
Fsp4HI GCNGC 1 cut(s) 108
GluI GCNGC 1 cut(s) 108
GsuI CTGGAG 1 cut(s) 121
HaeIII GGCC 3 cut(s) 5, 17, 192
HapII CCGG 1 cut(s) 18
Hin1II CATG 2 cut(s) 80, 169
HpaII CCGG 1 cut(s) 18
Hpy188I TCNGA 1 cut(s) 72
HpyAV CCTTC 3 cut(s) 7, 80, 181
HpyCH4III ACNGT 1 cut(s) 210
HpyCH4V TGCA 1 cut(s) 173
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 104
HpyF3I CTNAG 1 cut(s) 180
Hsp92II CATG 2 cut(s) 80, 169
KroI GCCGGC 1 cut(s) 17
KroNI GCCGGC 1 cut(s) 19
LmnI GCTCC 2 cut(s) 127, 140
LpnPI CCDG 6 cut(s) 31, 136, 145, 151, 189, 216
Lsp1109I GCAGC 1 cut(s) 94
LweI GCATC 2 cut(s) 30, 166
MaeIII GTNAC 1 cut(s) 34
MhlI GDGCHC 1 cut(s) 132
MluCI AATT 3 cut(s) 41, 45, 113
MnlI CCTC 2 cut(s) 175, 225
MroNI GCCGGC 1 cut(s) 17
MseI TTAA 1 cut(s) 44
MspI CCGG 1 cut(s) 18
MspR9I CCNGG 1 cut(s) 204
MvaI CCWGG 1 cut(s) 204
MwoI GCNNNNNNNGC 2 cut(s) 23, 104
NaeI GCCGGC 1 cut(s) 19
NgoMIV GCCGGC 1 cut(s) 17
NlaIII CATG 2 cut(s) 80, 169
NlaIV GGNNCC 1 cut(s) 129
NmuCI GTSAC 1 cut(s) 34
PdiI GCCGGC 1 cut(s) 19
PflFI GACNNNGTC 1 cut(s) 210
PflMI CCANNNNNTGG 2 cut(s) 82, 231
PkrI GCNGC 1 cut(s) 109
PshBI ATTAAT 1 cut(s) 44
Psp6I CCWGG 1 cut(s) 202
PspGI CCWGG 1 cut(s) 202
PspN4I GGNNCC 1 cut(s) 129
PspPI GGNCC 1 cut(s) 190
PstNI CAGNNNCTG 1 cut(s) 179
PsyI GACNNNGTC 1 cut(s) 210
SaqAI TTAA 1 cut(s) 44
SatI GCNGC 1 cut(s) 108
Sau96I GGNCC 1 cut(s) 190
ScrFI CCNGG 1 cut(s) 204
SduI GDGCHC 1 cut(s) 132
SetI ASST 2 cut(s) 91, 205
SfaNI GCATC 2 cut(s) 30, 166
Sse9I AATT 3 cut(s) 41, 45, 113
StyD4I CCNGG 1 cut(s) 202
TaaI ACNGT 1 cut(s) 210
TaqI TCGA 1 cut(s) 220
TasI AATT 3 cut(s) 41, 45, 113
Tru1I TTAA 1 cut(s) 44
Tru9I TTAA 1 cut(s) 44
TscAI CASTG 3 cut(s) 43, 145, 215
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 1 cut(s) 107
Tsp45I GTSAC 1 cut(s) 34
TspRI CASTG 3 cut(s) 43, 145, 215
Tth111I GACNNNGTC 1 cut(s) 210
Van91I CCANNNNNTGG 2 cut(s) 82, 231
VspI ATTAAT 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.