Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0018800

Physical Location & Seq

Genomic Coordinates Reverse (-)

12916280 .. 12918291

Gene Structure 2012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGATGCCACTGTGCTCTGTGATCTTGGGAAGCCTTCTGGTTTTTCTAACCCATGCTGAAAAACATGGCGTTCTAGTAATTGGACACCTTAAAAAAGGGTTGAACCCGCCATCCGTGTCTGACTTGGCTTTCGGGTCGCCATATCTTTCGACAGCCATTAAAACTGGGATCGTCACTGGTGTTATCGGCCTTGCTGTAGGTCCCTGCGAAGGAGTAGCTGTCGGAAGAAGTTTTGCTGCGTTTAAAAACTACCATATTGACGGTAACAAAGAAATGATCGCTTTCGGGATGATGAACATTGCTGGCTCTTGCACTTCTTGCTACTTGACCGCCGGACCATTTTCGCGAACTGCGGTGAACTTCAATGCAGGATGCAAAACTGCAGTCTCCAACATTGTAATGGCGACTGCAGTGATGTTCACACTCTTGTTTTTGACGCCATTGTTCCATTACACTCCACTTGTGGTGCTCTCCGCCATTATAATGGCTGCCATGCTTAGCCTCATCGATTACGAAGCCGTCATCCATCTCTGGAAAGTAGACAAGGTGGACTGCATTGTGTGCCTGGGTGCATACTTTGGCGTTGTCTTTGGCAGTGTTGAGATTGGCCTAGTCATTGCAGTTGCAGTTTCACTGCTAAGGGTTCTGCTATTCGTGGCGAGGCCAAGGACTTTCGCCTTAGGCAACATTCCAAACTCGTCGATTTATAGAAGCATTGATCAGTACCCGGCTGCGAACAATATTCCAGGAGTTCTTATTCTTCAAATTGATGCACCAATCTACTTTGCTAATGCAAACTATTTAAGGGAAAGGATCTCAAGATGGATATACGAGGAGGAAGACAAGATAAAATCTTCTGGACAAACAAGCTTACACTATGTTATACTAGACATTGGCACAAACCCCCGAAGCGAGGTGATCAAGAAGCTCGAGAAGTCCAAGTTCATCGAGAAAATCGGTCAGGAATGGATCTATCTTACAGTGGCAGAGGCTGTATCGGCATGTAACTTCACGCTACACACCTGCAAACCGAATCCAGGAGAAATAGACGGAAACAGACACGATGACAGCGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008272 GO:0008509 GO:0009507 GO:0009536 GO:0015075 GO:0015103 GO:0015116 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0072348 GO:0098656 GO:0098660 GO:0098661 GO:1901682 GO:1902358

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

STAS Sulfate_transp

Protein Analysis

359

Amino Acids

38.84

Weight (kDa)

7.58

Isoelectric Point (pI)

37.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sulfate_transp	PF00916	1 - 189	8.8e-58	Sulfate permease family
STAS	PF01740	242 - 298	3e-09	STAS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018800)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g23100 FvH4_2g23100 FvH4_2g23100 FvH4_2g23100 FvH4_2g23100
prunus_persica	Prupe.2G279100_v2.0.a1
pyrus_communis	pycom13g17190
rosa_multiflora	Rmu_co8339971.1_g000001
rosa_rugosa	Rorug06G0211400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	482
AarI	CACCTGC	1 cut(s)	1031
Acc36I	ACCTGC	1 cut(s)	1031
AccI	GTMKAC	1 cut(s)	540
AccII	CGCG	1 cut(s)	346
AciI	CCGC	4 cut(s)	107, 330, 353, 474
AclWI	GGATC	3 cut(s)	176, 821, 977
AcyI	GRCGYC	1 cut(s)	437
AfaI	GTAC	1 cut(s)	725
AfiI	CCNNNNNNNGG	3 cut(s)	209, 913, 1037
AgsI	TTSAA	3 cut(s)	103, 364, 764
AjnI	CCWGG	3 cut(s)	564, 745, 1036
AloI	GAACNNNNNNTCC	2 cut(s)	95, 127
AluBI	AGCT	3 cut(s)	218, 870, 928
AluI	AGCT	3 cut(s)	218, 870, 928
Alw21I	GWGCWC	2 cut(s)	17, 471
Alw26I	GTCTC	1 cut(s)	391
AlwI	GGATC	3 cut(s)	176, 821, 977
AlwNI	CAGNNNCTG	1 cut(s)	992
Ama87I	CYCGRG	1 cut(s)	929
AoxI	GGCC	3 cut(s)	187, 607, 662
ApeKI	GCWGC	3 cut(s)	236, 488, 731
ArsI	GACNNNNNNTTYG	4 cut(s)	113, 145, 369, 401
AspS9I	GGNCC	2 cut(s)	200, 335
AsuC2I	CCSGG	1 cut(s)	728
AsuHPI	GGTGA	2 cut(s)	367, 928
AvaI	CYCGRG	1 cut(s)	929
AvaII	GGWCC	2 cut(s)	200, 335
AxyI	CCTNAGG	1 cut(s)	679
BbsI	GAAGAC	1 cut(s)	846
Bbv12I	GWGCWC	2 cut(s)	17, 471
BbvI	GCAGC	3 cut(s)	223, 475, 718
BccI	CCATC	3 cut(s)	118, 534, 816
BceAI	ACGGC	1 cut(s)	503
BciT130I	CCWGG	3 cut(s)	566, 747, 1038
BclI	TGATCA	2 cut(s)	718, 918
BcnI	CCSGG	1 cut(s)	728
BcoDI	GTCTC	1 cut(s)	391
BfaI	CTAG	3 cut(s)	74, 611, 887
BfmI	CTRYAG	3 cut(s)	195, 381, 408
BfuAI	ACCTGC	1 cut(s)	1031
BisI	GCNGC	3 cut(s)	237, 489, 732
BlpI	GCTNAGC	1 cut(s)	497
BlsI	GCNGC	3 cut(s)	238, 490, 733
Bme1390I	CCNGG	4 cut(s)	566, 728, 747, 1038
Bme18I	GGWCC	2 cut(s)	200, 335
BmeT110I	CYCGRG	1 cut(s)	929
BmgT120I	GGNCC	2 cut(s)	200, 335
BmiI	GGNNCC	1 cut(s)	202
BmrFI	CCNGG	4 cut(s)	566, 728, 747, 1038
BmrI	ACTGGG	1 cut(s)	174
BmsI	GCATC	2 cut(s)	362, 760
BmuI	ACTGGG	1 cut(s)	174
BpiI	GAAGAC	1 cut(s)	846
Bpu10I	CCTNAGC	1 cut(s)	638
Bpu1102I	GCTNAGC	1 cut(s)	497
BpuEI	CTTGAG	1 cut(s)	802
BpuMI	CCSGG	1 cut(s)	728
Bsa29I	ATCGAT	1 cut(s)	507
BsaHI	GRCGYC	1 cut(s)	437
BsaJI	CCNNGG	2 cut(s)	565, 665
BsaXI	ACNNNNNCTCC	2 cut(s)	204, 234
Bsc4I	CCNNNNNNNGG	3 cut(s)	209, 913, 1037
Bse1I	ACTGG	2 cut(s)	169, 181
Bse21I	CCTNAGG	1 cut(s)	679
Bse3DI	GCAATG	2 cut(s)	297, 615
BseBI	CCWGG	3 cut(s)	566, 747, 1038
BseCI	ATCGAT	1 cut(s)	507
BseDI	CCNNGG	2 cut(s)	565, 665
BseGI	GGATG	4 cut(s)	110, 294, 377, 522
BseLI	CCNNNNNNNGG	3 cut(s)	209, 913, 1037
BseMI	GCAATG	2 cut(s)	297, 615
BseNI	ACTGG	2 cut(s)	169, 181
BseRI	GAGGAG	1 cut(s)	848
BseXI	GCAGC	3 cut(s)	223, 475, 718
Bsh1236I	CGCG	1 cut(s)	346
BshFI	GGCC	3 cut(s)	189, 609, 664
BshVI	ATCGAT	1 cut(s)	507
BsiHKAI	GWGCWC	2 cut(s)	17, 471
BsiHKCI	CYCGRG	1 cut(s)	929
BsiSI	CCGG	2 cut(s)	333, 728
BslFI	GGGAC	1 cut(s)	186
BslI	CCNNNNNNNGG	3 cut(s)	209, 913, 1037
BsmAI	GTCTC	1 cut(s)	391
BsmFI	GGGAC	1 cut(s)	186
BsnI	GGCC	3 cut(s)	189, 609, 664
BsoBI	CYCGRG	1 cut(s)	929
Bsp1286I	GDGCHC	2 cut(s)	17, 471
Bsp143I	GATC	7 cut(s)	21, 168, 276, 718, 813, 918, 969
Bsp1720I	GCTNAGC	1 cut(s)	497
Bsp68I	TCGCGA	1 cut(s)	346
BspACI	CCGC	4 cut(s)	107, 330, 353, 474
BspANI	GGCC	3 cut(s)	189, 609, 664
BspDI	ATCGAT	1 cut(s)	507
BspFNI	CGCG	1 cut(s)	346
BspLI	GGNNCC	1 cut(s)	202
BspMAI	CTGCAG	2 cut(s)	385, 412
BspMI	ACCTGC	1 cut(s)	1031
BspPI	GGATC	3 cut(s)	176, 821, 977
BsrDI	GCAATG	2 cut(s)	297, 615
BsrI	ACTGG	2 cut(s)	169, 181
BssECI	CCNNGG	2 cut(s)	565, 665
BssMI	GATC	7 cut(s)	21, 168, 276, 718, 813, 918, 969
BssNI	GRCGYC	1 cut(s)	437
BssT1I	CCWWGG	1 cut(s)	665
Bst2UI	CCWGG	3 cut(s)	566, 747, 1038
Bst4CI	ACNGT	3 cut(s)	12, 263, 982
BstACI	GRCGYC	1 cut(s)	437
BstAPI	GCANNNNNTGC	2 cut(s)	318, 561
BstC8I	GCNNGC	1 cut(s)	304
BstDEI	CTNAG	3 cut(s)	497, 638, 679
BstF5I	GGATG	4 cut(s)	110, 294, 377, 522
BstFNI	CGCG	1 cut(s)	346
BstKTI	GATC	7 cut(s)	24, 171, 279, 721, 816, 921, 972
BstMAI	GTCTC	1 cut(s)	391
BstMBI	GATC	7 cut(s)	21, 168, 276, 718, 813, 918, 969
BstMWI	GCNNNNNNNGC	3 cut(s)	318, 561, 998
BstNI	CCWGG	3 cut(s)	566, 747, 1038
BstNSI	RCATGY	1 cut(s)	1005
BstSCI	CCNGG	4 cut(s)	564, 726, 745, 1036
BstSFI	CTRYAG	3 cut(s)	195, 381, 408
BstUI	CGCG	1 cut(s)	346
BstV1I	GCAGC	3 cut(s)	223, 475, 718
BstV2I	GAAGAC	1 cut(s)	846
BstX2I	RGATCY	2 cut(s)	813, 969
BstXI	CCANNNNNNTGG	1 cut(s)	484
BstYI	RGATCY	2 cut(s)	813, 969
Bsu15I	ATCGAT	1 cut(s)	507
Bsu36I	CCTNAGG	1 cut(s)	679
BsuRI	GGCC	3 cut(s)	189, 609, 664
BsuTUI	ATCGAT	1 cut(s)	507
BtsCI	GGATG	4 cut(s)	110, 294, 377, 522
BtsI	GCAGTG	3 cut(s)	417, 601, 632
BtsIMutI	CAGTG	6 cut(s)	8, 174, 417, 601, 632, 987
BtuMI	TCGCGA	1 cut(s)	346
BveI	ACCTGC	1 cut(s)	1031
Cac8I	GCNNGC	1 cut(s)	304
CaiI	CAGNNNCTG	1 cut(s)	992
Cfr13I	GGNCC	2 cut(s)	200, 335
ClaI	ATCGAT	1 cut(s)	507
CseI	GACGC	2 cut(s)	445, 1060
Csp6I	GTAC	1 cut(s)	724
CviAII	CATG	4 cut(s)	53, 65, 493, 1002
CviQI	GTAC	1 cut(s)	724
DdeI	CTNAG	3 cut(s)	497, 638, 679
DpnI	GATC	7 cut(s)	23, 170, 278, 720, 815, 920, 971
DpnII	GATC	7 cut(s)	21, 168, 276, 718, 813, 918, 969
DraI	TTTAAA	1 cut(s)	244
EciI	GGCGGA	1 cut(s)	463
Eco130I	CCWWGG	1 cut(s)	665
Eco47I	GGWCC	2 cut(s)	200, 335
Eco81I	CCTNAGG	1 cut(s)	679
Eco88I	CYCGRG	1 cut(s)	929
EcoO109I	RGGNCCY	1 cut(s)	200
EcoRII	CCWGG	3 cut(s)	564, 745, 1036
EcoT14I	CCWWGG	1 cut(s)	665
ErhI	CCWWGG	1 cut(s)	665
FaeI	CATG	4 cut(s)	56, 68, 496, 1005
FaqI	GGGAC	1 cut(s)	186
FatI	CATG	4 cut(s)	52, 64, 492, 1001
FauI	CCCGC	1 cut(s)	114
FbaI	TGATCA	2 cut(s)	718, 918
FblI	GTMKAC	1 cut(s)	540
Fnu4HI	GCNGC	3 cut(s)	237, 489, 732
FokI	GGATG	4 cut(s)	97, 301, 384, 509
Fsp4HI	GCNGC	3 cut(s)	237, 489, 732
FspBI	CTAG	3 cut(s)	74, 611, 887
GluI	GCNGC	3 cut(s)	237, 489, 732
HaeIII	GGCC	3 cut(s)	189, 609, 664
HapII	CCGG	2 cut(s)	333, 728
HgaI	GACGC	2 cut(s)	445, 1060
Hin1I	GRCGYC	1 cut(s)	437
Hin1II	CATG	4 cut(s)	56, 68, 496, 1005
HindIII	AAGCTT	1 cut(s)	868
HinfI	GANTC	1 cut(s)	1033
HpaII	CCGG	2 cut(s)	333, 728
HphI	GGTGA	2 cut(s)	367, 928
Hpy166II	GTNNAC	4 cut(s)	358, 420, 541, 550
Hpy188I	TCNGA	2 cut(s)	121, 224
Hpy188III	TCNNGA	9 cut(s)	286, 345, 532, 819, 858, 922, 931, 949, 962
Hpy8I	GTNNAC	4 cut(s)	358, 420, 541, 550
Hpy99I	CGWCG	1 cut(s)	703
HpyAV	CCTTC	2 cut(s)	44, 203
HpyCH4III	ACNGT	3 cut(s)	12, 263, 982
HpyF10VI	GCNNNNNNNGC	3 cut(s)	318, 561, 998
HpyF3I	CTNAG	3 cut(s)	497, 638, 679
Hsp92I	GRCGYC	1 cut(s)	437
Hsp92II	CATG	4 cut(s)	56, 68, 496, 1005
Ksp22I	TGATCA	2 cut(s)	718, 918
Kzo9I	GATC	7 cut(s)	21, 168, 276, 718, 813, 918, 969
Lsp1109I	GCAGC	3 cut(s)	223, 475, 718
LweI	GCATC	2 cut(s)	362, 760
MaeI	CTAG	3 cut(s)	74, 611, 887
MaeIII	GTNAC	3 cut(s)	172, 263, 1004
MalI	GATC	7 cut(s)	23, 170, 278, 720, 815, 920, 971
MboI	GATC	7 cut(s)	21, 168, 276, 718, 813, 918, 969
MboII	GAAGA	4 cut(s)	237, 752, 846, 851
MflI	RGATCY	2 cut(s)	813, 969
MhlI	GDGCHC	2 cut(s)	17, 471
MluCI	AATT	2 cut(s)	78, 765
MmeI	TCCRAC	2 cut(s)	202, 414
MnlI	CCTC	6 cut(s)	512, 654, 826, 829, 907, 982
MseI	TTAA	4 cut(s)	90, 159, 243, 803
MslI	CAYNNNNRTG	2 cut(s)	398, 482
MspI	CCGG	2 cut(s)	333, 728
MspR9I	CCNGG	4 cut(s)	566, 728, 747, 1038
MvaI	CCWGG	3 cut(s)	566, 747, 1038
MvnI	CGCG	1 cut(s)	346
MwoI	GCNNNNNNNGC	3 cut(s)	318, 561, 998
NciI	CCSGG	1 cut(s)	728
NdeII	GATC	7 cut(s)	21, 168, 276, 718, 813, 918, 969
NlaIII	CATG	4 cut(s)	56, 68, 496, 1005
NlaIV	GGNNCC	1 cut(s)	202
NmuCI	GTSAC	1 cut(s)	172
NruI	TCGCGA	1 cut(s)	346
NspI	RCATGY	1 cut(s)	1005
PaeR7I	CTCGAG	1 cut(s)	929
PaqCI	CACCTGC	1 cut(s)	1031
PcsI	WCGNNNNNNNCGW	1 cut(s)	1068
PfeI	GAWTC	1 cut(s)	1033
PflFI	GACNNNGTC	1 cut(s)	1070
PfoI	TCCNGGA	2 cut(s)	745, 1036
PkrI	GCNGC	3 cut(s)	238, 490, 733
PpuMI	RGGWCCY	1 cut(s)	200
PsiI	TTATAA	1 cut(s)	482
Psp5II	RGGWCCY	1 cut(s)	200
Psp6I	CCWGG	3 cut(s)	564, 745, 1036
PspGI	CCWGG	3 cut(s)	564, 745, 1036
PspN4I	GGNNCC	1 cut(s)	202
PspPI	GGNCC	2 cut(s)	200, 335
PspPPI	RGGWCCY	1 cut(s)	200
PstI	CTGCAG	2 cut(s)	385, 412
PstNI	CAGNNNCTG	1 cut(s)	992
PsuI	RGATCY	2 cut(s)	813, 969
PsyI	GACNNNGTC	1 cut(s)	1070
RruI	TCGCGA	1 cut(s)	346
RsaI	GTAC	1 cut(s)	725
RsaNI	GTAC	1 cut(s)	724
RseI	CAYNNNNRTG	2 cut(s)	398, 482
SaqAI	TTAA	4 cut(s)	90, 159, 243, 803
SatI	GCNGC	3 cut(s)	237, 489, 732
Sau3AI	GATC	7 cut(s)	21, 168, 276, 718, 813, 918, 969
Sau96I	GGNCC	2 cut(s)	200, 335
ScrFI	CCNGG	4 cut(s)	566, 728, 747, 1038
SduI	GDGCHC	2 cut(s)	17, 471
SetI	ASST	8 cut(s)	90, 202, 220, 549, 872, 918, 930, 1025
SfaNI	GCATC	2 cut(s)	362, 760
SfcI	CTRYAG	3 cut(s)	195, 381, 408
Sfr274I	CTCGAG	1 cut(s)	929
SinI	GGWCC	2 cut(s)	200, 335
SlaI	CTCGAG	1 cut(s)	929
SmiMI	CAYNNNNRTG	2 cut(s)	398, 482
SmlI	CTYRAG	2 cut(s)	817, 929
SmoI	CTYRAG	2 cut(s)	817, 929
Sse9I	AATT	2 cut(s)	78, 765
SsiI	CCGC	4 cut(s)	107, 330, 353, 474
SspI	AATATT	1 cut(s)	742
SspMI	CTAG	3 cut(s)	74, 611, 887
StyD4I	CCNGG	4 cut(s)	564, 726, 745, 1036
StyI	CCWWGG	1 cut(s)	665
TaaI	ACNGT	3 cut(s)	12, 263, 982
TaqI	TCGA	5 cut(s)	149, 507, 701, 930, 948
TaqII	GACCGA	1 cut(s)	947
TasI	AATT	2 cut(s)	78, 765
TfiI	GAWTC	1 cut(s)	1033
Tru1I	TTAA	4 cut(s)	90, 159, 243, 803
Tru9I	TTAA	4 cut(s)	90, 159, 243, 803
TscAI	CASTG	6 cut(s)	15, 181, 417, 601, 639, 987
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	3 cut(s)	236, 488, 731
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	2 cut(s)	308, 934
TspGWI	ACGGA	2 cut(s)	103, 1065
TspRI	CASTG	6 cut(s)	15, 181, 417, 601, 639, 987
Tth111I	GACNNNGTC	1 cut(s)	1070
VpaK11BI	GGWCC	2 cut(s)	200, 335
XceI	RCATGY	1 cut(s)	1005
XcmI	CCANNNNNNNNNTGG	1 cut(s)	397
XhoI	CTCGAG	1 cut(s)	929
XmiI	GTMKAC	1 cut(s)	540
XspI	CTAG	3 cut(s)	74, 611, 887

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.