pycom13g17220

RING-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0019308
Physical Location & Seq
Forward (+)
12969201 .. 12970196
996 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 705 bp
ATGGCAGGGCTTGGGAGGTTCCCTGGGGTAGATCTTCCTCCTAGAAGAAGAAAACGGACCCAACGTCACGAAGCTTATGCTAATGACAGAGAACCACCTCCGAGGGAATGGCTGGAGCCATCGGTGAATCAAGTGAGCTCCATAGATTTGGATGATGCAGCTCATAACGCTCGCAGGAGGTTAGAGAAAAAGCTTGGTTATCACAAACCCTCCTCAAGGTTCTCCCCCTTCTTATTTTTCGCACGATTTCCACGCTCGTTTTTCTTTTTTGCACTTATTATATTGTTCGTGTTTTTTAATTCTCTTTTGTTTTATTCAATTCAATTATCACTGAAAAAATTAGGCAAGCGCAAAAAGACACAAGAGAGCGTAAAACGGTCAGCAGAATTGGAAATCAAAAGGAAGGAGAAAAAGAGGCTTGTGGTATTTGTTTGGAAGATTTTGAGGCAGAAAAACAGGCCGTTGATCTTAGCTGTGCCCACAAGTTCCACCCCAATTGCCTTCTTCCATGGCTTCACGTCCATCCGGATTGCCCTTACTGTAGGACCCCTGTTCGTTGCTCTTAAATTTCAGGGATACCAAAGGGAATCCACTCCGCAGTTCACATTCTTGGATCATTGTACCAAAGCATATTGTAACTCTATATGTGTGGTAAATGTACAAGTTAGTAGTTTGATGGTTTCCTTTTGTTCAAGTAGCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

235

Amino Acids

27.14

Weight (kDa)

10.59

Isoelectric Point (pI)

56.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019308)

Species Orthologous Gene IDs
prunus_persica Prupe.1G020100_v2.0.a1 Prupe.1G020100_v2.0.a1
pyrus_communis pycom13g17220
rosa_roxburghii Rroxscaffold_5G00334240
rosa_rugosa Rorug03G0310700
rosa_samantha Rh4AG016800 Rh4BG011600 Rh4DG012500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 525
AciI CCGC 1 cut(s) 596
AclWI GGATC 1 cut(s) 621
AcsI RAATTY 1 cut(s) 566
AfaI GTAC 2 cut(s) 622, 660
AfiI CCNNNNNNNGG 1 cut(s) 216
AgsI TTSAA 3 cut(s) 318, 323, 693
AhdI GACNNNNNGTC 1 cut(s) 63
AjiI CACGTC 1 cut(s) 519
AjnI CCWGG 1 cut(s) 22
AluBI AGCT 6 cut(s) 74, 138, 161, 193, 473, 699
AluI AGCT 6 cut(s) 74, 138, 161, 193, 473, 699
Alw21I GWGCWC 1 cut(s) 140
AlwI GGATC 1 cut(s) 621
Aor13HI TCCGGA 1 cut(s) 525
AoxI GGCC 1 cut(s) 458
ApeKI GCWGC 1 cut(s) 158
ApoI RAATTY 1 cut(s) 566
AspLEI GCGC 1 cut(s) 351
AspS9I GGNCC 2 cut(s) 57, 545
AsuHPI GGTGA 1 cut(s) 136
AvaII GGWCC 2 cut(s) 57, 545
BaeGI GKGCMC 1 cut(s) 480
BanII GRGCYC 1 cut(s) 140
Bbv12I GWGCWC 1 cut(s) 140
BbvI GCAGC 1 cut(s) 170
BccI CCATC 3 cut(s) 127, 530, 670
BceAI ACGGC 1 cut(s) 445
BcgI CGANNNNNNTGC 2 cut(s) 59, 93
BciT130I CCWGG 1 cut(s) 24
BciVI GTATCC 1 cut(s) 569
BfaI CTAG 1 cut(s) 42
BfmI CTRYAG 1 cut(s) 540
BfuI GTATCC 1 cut(s) 569
BglII AGATCT 1 cut(s) 31
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
Bme1390I CCNGG 1 cut(s) 24
Bme18I GGWCC 2 cut(s) 57, 545
BmeRI GACNNNNNGTC 1 cut(s) 63
BmgBI CACGTC 1 cut(s) 519
BmgT120I GGNCC 2 cut(s) 57, 545
BmiI GGNNCC 4 cut(s) 20, 59, 117, 547
BmrFI CCNGG 1 cut(s) 24
BmsI GCATC 1 cut(s) 145
BpmI CTGGAG 1 cut(s) 134
BpuEI CTTGAG 1 cut(s) 199
BsaJI CCNNGG 4 cut(s) 22, 23, 101, 508
BsaWI WCCGGW 1 cut(s) 525
BsaXI ACNNNNNCTCC 2 cut(s) 194, 224
Bsc4I CCNNNNNNNGG 1 cut(s) 216
BseAI TCCGGA 1 cut(s) 525
BseBI CCWGG 1 cut(s) 24
BseDI CCNNGG 4 cut(s) 22, 23, 101, 508
BseGI GGATG 2 cut(s) 157, 522
BseLI CCNNNNNNNGG 1 cut(s) 216
BseRI GAGGAG 1 cut(s) 202
BseSI GKGCMC 1 cut(s) 480
BseXI GCAGC 1 cut(s) 170
BshFI GGCC 1 cut(s) 460
BsiHKAI GWGCWC 1 cut(s) 140
BsiSI CCGG 1 cut(s) 526
BslI CCNNNNNNNGG 1 cut(s) 216
BsnI GGCC 1 cut(s) 460
Bsp1286I GDGCHC 2 cut(s) 140, 480
Bsp13I TCCGGA 1 cut(s) 525
Bsp1407I TGTACA 1 cut(s) 658
Bsp143I GATC 3 cut(s) 31, 465, 613
Bsp19I CCATGG 1 cut(s) 508
BspACI CCGC 1 cut(s) 596
BspANI GGCC 1 cut(s) 460
BspEI TCCGGA 1 cut(s) 525
BspLI GGNNCC 4 cut(s) 20, 59, 117, 547
BspPI GGATC 1 cut(s) 621
BsrGI TGTACA 1 cut(s) 658
BssECI CCNNGG 4 cut(s) 22, 23, 101, 508
BssMI GATC 3 cut(s) 31, 465, 613
BssT1I CCWWGG 1 cut(s) 508
Bst2UI CCWGG 1 cut(s) 24
Bst4CI ACNGT 2 cut(s) 378, 541
BstAUI TGTACA 1 cut(s) 658
BstC8I GCNNGC 2 cut(s) 172, 347
BstDEI CTNAG 1 cut(s) 469
BstDSI CCRYGG 1 cut(s) 508
BstENI CCTNNNNNAGG 1 cut(s) 214
BstF5I GGATG 2 cut(s) 157, 522
BstHHI GCGC 1 cut(s) 351
BstKTI GATC 3 cut(s) 34, 468, 616
BstMBI GATC 3 cut(s) 31, 465, 613
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstNI CCWGG 1 cut(s) 24
BstSCI CCNGG 1 cut(s) 22
BstSFI CTRYAG 1 cut(s) 540
BstSLI GKGCMC 1 cut(s) 480
BstV1I GCAGC 1 cut(s) 170
BstX2I RGATCY 1 cut(s) 31
BstXI CCANNNNNNTGG 1 cut(s) 148
BstYI RGATCY 1 cut(s) 31
BsuI GTATCC 1 cut(s) 569
BsuRI GGCC 1 cut(s) 460
BtgI CCRYGG 1 cut(s) 508
BtrI CACGTC 1 cut(s) 519
BtsCI GGATG 2 cut(s) 157, 522
BtsIMutI CAGTG 1 cut(s) 329
Cac8I GCNNGC 2 cut(s) 172, 347
CfoI GCGC 1 cut(s) 351
Cfr13I GGNCC 2 cut(s) 57, 545
Csp6I GTAC 2 cut(s) 621, 659
CspCI CAANNNNNGTGG 2 cut(s) 478, 513
CviAII CATG 1 cut(s) 509
CviQI GTAC 2 cut(s) 621, 659
DdeI CTNAG 1 cut(s) 469
DpnI GATC 3 cut(s) 33, 467, 615
DpnII GATC 3 cut(s) 31, 465, 613
DriI GACNNNNNGTC 1 cut(s) 63
Eam1105I GACNNNNNGTC 1 cut(s) 63
Ecl136II GAGCTC 1 cut(s) 138
Eco130I CCWWGG 1 cut(s) 508
Eco24I GRGCYC 1 cut(s) 140
Eco47I GGWCC 2 cut(s) 57, 545
Eco53kI GAGCTC 1 cut(s) 138
EcoICRI GAGCTC 1 cut(s) 138
EcoNI CCTNNNNNAGG 1 cut(s) 214
EcoO109I RGGNCCY 1 cut(s) 545
EcoRII CCWGG 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 508
EcoT38I GRGCYC 1 cut(s) 140
ErhI CCWWGG 1 cut(s) 508
FaeI CATG 1 cut(s) 512
FaiI YATR 8 cut(s) 78, 143, 165, 281, 510, 631, 644, 646
FatI CATG 1 cut(s) 508
Fnu4HI GCNGC 1 cut(s) 159
FokI GGATG 2 cut(s) 164, 509
FriOI GRGCYC 1 cut(s) 140
Fsp4HI GCNGC 1 cut(s) 159
FspBI CTAG 1 cut(s) 42
GlaI GCGC 1 cut(s) 350
GluI GCNGC 1 cut(s) 159
GsuI CTGGAG 1 cut(s) 134
HaeIII GGCC 1 cut(s) 460
HapII CCGG 1 cut(s) 526
HhaI GCGC 1 cut(s) 351
Hin1II CATG 1 cut(s) 512
Hin6I GCGC 1 cut(s) 349
HinP1I GCGC 1 cut(s) 349
HindIII AAGCTT 2 cut(s) 72, 191
HinfI GANTC 2 cut(s) 127, 587
HpaII CCGG 1 cut(s) 526
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 1 cut(s) 603
Hpy188I TCNGA 1 cut(s) 102
Hpy188III TCNNGA 2 cut(s) 68, 526
Hpy8I GTNNAC 1 cut(s) 603
HpyAV CCTTC 3 cut(s) 238, 397, 511
HpyCH4III ACNGT 2 cut(s) 378, 541
HpyCH4IV ACGT 2 cut(s) 64, 518
HpyCH4V TGCA 2 cut(s) 158, 272
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
HpyF3I CTNAG 1 cut(s) 469
HpySE526I ACGT 2 cut(s) 64, 518
Hsp92II CATG 1 cut(s) 512
HspAI GCGC 1 cut(s) 349
Kpn2I TCCGGA 1 cut(s) 525
Kzo9I GATC 3 cut(s) 31, 465, 613
LmnI GCTCC 2 cut(s) 115, 143
LpnPI CCDG 8 cut(s) 9, 36, 98, 160, 442, 539, 557, 563
Lsp1109I GCAGC 1 cut(s) 170
LweI GCATC 1 cut(s) 145
MaeI CTAG 1 cut(s) 42
MaeII ACGT 2 cut(s) 64, 518
MaeIII GTNAC 2 cut(s) 65, 635
MalI GATC 3 cut(s) 33, 467, 615
MboI GATC 3 cut(s) 31, 465, 613
MboII GAAGA 5 cut(s) 26, 57, 60, 448, 496
MfeI CAATTG 1 cut(s) 495
MflI RGATCY 1 cut(s) 31
MhlI GDGCHC 2 cut(s) 140, 480
MluCI AATT 7 cut(s) 298, 318, 323, 338, 386, 495, 566
MnlI CCTC 9 cut(s) 9, 48, 96, 108, 171, 220, 223, 408, 438
MroI TCCGGA 1 cut(s) 525
MseI TTAA 2 cut(s) 297, 564
MspI CCGG 1 cut(s) 526
MspR9I CCNGG 1 cut(s) 24
MunI CAATTG 1 cut(s) 495
MvaI CCWGG 1 cut(s) 24
MwoI GCNNNNNNNGC 1 cut(s) 167
NcoI CCATGG 1 cut(s) 508
NdeII GATC 3 cut(s) 31, 465, 613
NlaIII CATG 1 cut(s) 512
NlaIV GGNNCC 4 cut(s) 20, 59, 117, 547
NmuCI GTSAC 1 cut(s) 65
PasI CCCWGGG 1 cut(s) 23
PcsI WCGNNNNNNNCGW 1 cut(s) 61
PfeI GAWTC 2 cut(s) 127, 587
PkrI GCNGC 1 cut(s) 160
PpuMI RGGWCCY 1 cut(s) 545
Psp124BI GAGCTC 1 cut(s) 140
Psp5II RGGWCCY 1 cut(s) 545
Psp6I CCWGG 1 cut(s) 22
PspGI CCWGG 1 cut(s) 22
PspN4I GGNNCC 4 cut(s) 20, 59, 117, 547
PspPI GGNCC 2 cut(s) 57, 545
PspPPI RGGWCCY 1 cut(s) 545
PsuI RGATCY 1 cut(s) 31
RsaI GTAC 2 cut(s) 622, 660
RsaNI GTAC 2 cut(s) 621, 659
SacI GAGCTC 1 cut(s) 140
SaqAI TTAA 2 cut(s) 297, 564
SatI GCNGC 1 cut(s) 159
Sau3AI GATC 3 cut(s) 31, 465, 613
Sau96I GGNCC 2 cut(s) 57, 545
ScrFI CCNGG 1 cut(s) 24
SduI GDGCHC 2 cut(s) 140, 480
SfaNI GCATC 1 cut(s) 145
SfcI CTRYAG 1 cut(s) 540
SinI GGWCC 2 cut(s) 57, 545
SmlI CTYRAG 1 cut(s) 214
SmoI CTYRAG 1 cut(s) 214
Sse9I AATT 7 cut(s) 298, 318, 323, 338, 386, 495, 566
SsiI CCGC 1 cut(s) 596
SspMI CTAG 1 cut(s) 42
SstI GAGCTC 1 cut(s) 140
StyD4I CCNGG 1 cut(s) 22
StyI CCWWGG 1 cut(s) 508
TaaI ACNGT 2 cut(s) 378, 541
TaiI ACGT 2 cut(s) 67, 521
TasI AATT 7 cut(s) 298, 318, 323, 338, 386, 495, 566
TatI WGTACW 1 cut(s) 658
TfiI GAWTC 2 cut(s) 127, 587
Tru1I TTAA 2 cut(s) 297, 564
Tru9I TTAA 2 cut(s) 297, 564
TscAI CASTG 1 cut(s) 336
TseFI GTSAC 1 cut(s) 65
TseI GCWGC 1 cut(s) 158
Tsp45I GTSAC 1 cut(s) 65
TspGWI ACGGA 1 cut(s) 70
TspRI CASTG 1 cut(s) 336
VpaK11BI GGWCC 2 cut(s) 57, 545
XagI CCTNNNNNAGG 1 cut(s) 214
XapI RAATTY 1 cut(s) 566
XspI CTAG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.