pycom13g19760

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Reverse (-)
15698700 .. 15699133
434 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g19760.1

Sequence Viewer

Length: 258 bp
ATGTTGTACTTTGTGGAAGACAACAGTAATTCGTCCACCCCAACACAAGAGTCTTGCCAACCAACAGCAACAACCTTCGGGGAGCCCATAGTCCTTGAGATCCCCGTGGTCTCAGAGGTAACTAGCCTGCGGGTTTCTTGGGCATCTTCTCCTGATGTAGTTGTTGCTTTTGAAGTGCCCATCTCTCAACCTCAGGGTTTTGGTGAGGGTTCGGGTATTATCCCTCCTTCTCCCATAAGCAAAGATGATCATTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

86

Amino Acids

9.02

Weight (kDa)

4.05

Isoelectric Point (pI)

54.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024466)

Species Orthologous Gene IDs
malus_domestica MD05G1129400.v1.1
pyrus_communis pycom13g19760 pycom13g22580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 130
AclWI GGATC 1 cut(s) 94
AfaI GTAC 1 cut(s) 8
AgsI TTSAA 1 cut(s) 173
Alw26I GTCTC 1 cut(s) 115
AlwI GGATC 1 cut(s) 94
AsuHPI GGTGA 1 cut(s) 215
AxyI CCTNAGG 1 cut(s) 192
BaeGI GKGCMC 1 cut(s) 180
BanII GRGCYC 1 cut(s) 87
BbsI GAAGAC 1 cut(s) 24
BccI CCATC 1 cut(s) 188
BclI TGATCA 1 cut(s) 247
BcoDI GTCTC 1 cut(s) 115
BfaI CTAG 1 cut(s) 123
BmiI GGNNCC 1 cut(s) 84
BmsI GCATC 1 cut(s) 152
BpiI GAAGAC 1 cut(s) 24
BpuEI CTTGAG 1 cut(s) 116
BsaI GGTCTC 1 cut(s) 115
BsaJI CCNNGG 1 cut(s) 105
Bse21I CCTNAGG 1 cut(s) 192
BseDI CCNNGG 1 cut(s) 105
BseMII CTCAG 2 cut(s) 126, 206
BseSI GKGCMC 1 cut(s) 180
BsmAI GTCTC 1 cut(s) 115
Bso31I GGTCTC 1 cut(s) 115
Bsp1286I GDGCHC 2 cut(s) 87, 180
Bsp143I GATC 2 cut(s) 99, 247
BspACI CCGC 1 cut(s) 130
BspCNI CTCAG 2 cut(s) 125, 205
BspLI GGNNCC 1 cut(s) 84
BspPI GGATC 1 cut(s) 94
BspTNI GGTCTC 1 cut(s) 115
BssECI CCNNGG 1 cut(s) 105
BssMI GATC 2 cut(s) 99, 247
Bst4CI ACNGT 1 cut(s) 26
BstC8I GCNNGC 1 cut(s) 128
BstDEI CTNAG 2 cut(s) 112, 192
BstDSI CCRYGG 1 cut(s) 105
BstKTI GATC 2 cut(s) 102, 250
BstMAI GTCTC 1 cut(s) 115
BstMBI GATC 2 cut(s) 99, 247
BstSLI GKGCMC 1 cut(s) 180
BstV2I GAAGAC 1 cut(s) 24
BstX2I RGATCY 1 cut(s) 99
BstYI RGATCY 1 cut(s) 99
Bsu36I CCTNAGG 1 cut(s) 192
BtgI CCRYGG 1 cut(s) 105
Cac8I GCNNGC 1 cut(s) 128
Csp6I GTAC 1 cut(s) 7
CviJI RGCY 2 cut(s) 85, 126
CviKI_1 RGCY 2 cut(s) 85, 126
CviQI GTAC 1 cut(s) 7
DdeI CTNAG 2 cut(s) 112, 192
DpnI GATC 2 cut(s) 101, 249
DpnII GATC 2 cut(s) 99, 247
Eco24I GRGCYC 1 cut(s) 87
Eco31I GGTCTC 1 cut(s) 115
Eco81I CCTNAGG 1 cut(s) 192
EcoT38I GRGCYC 1 cut(s) 87
FaiI YATR 2 cut(s) 89, 236
FauI CCCGC 1 cut(s) 123
FbaI TGATCA 1 cut(s) 247
FriOI GRGCYC 1 cut(s) 87
FspBI CTAG 1 cut(s) 123
HinfI GANTC 1 cut(s) 50
HphI GGTGA 1 cut(s) 215
Hpy166II GTNNAC 1 cut(s) 36
Hpy188I TCNGA 1 cut(s) 115
Hpy188III TCNNGA 1 cut(s) 152
Hpy8I GTNNAC 1 cut(s) 36
HpyAV CCTTC 2 cut(s) 85, 237
HpyCH4III ACNGT 1 cut(s) 26
HpyF3I CTNAG 2 cut(s) 112, 192
Ksp22I TGATCA 1 cut(s) 247
Kzo9I GATC 2 cut(s) 99, 247
LmnI GCTCC 1 cut(s) 82
LpnPI CCDG 3 cut(s) 140, 165, 179
LweI GCATC 1 cut(s) 152
MaeI CTAG 1 cut(s) 123
MaeIII GTNAC 1 cut(s) 118
MalI GATC 2 cut(s) 101, 249
MboI GATC 2 cut(s) 99, 247
MboII GAAGA 2 cut(s) 29, 138
MflI RGATCY 1 cut(s) 99
MhlI GDGCHC 2 cut(s) 87, 180
MluCI AATT 1 cut(s) 28
MlyI GAGTC 1 cut(s) 59
MnlI CCTC 4 cut(s) 109, 199, 201, 234
MseI TTAA 1 cut(s) 256
NdeII GATC 2 cut(s) 99, 247
NlaIV GGNNCC 1 cut(s) 84
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
PspN4I GGNNCC 1 cut(s) 84
PsuI RGATCY 1 cut(s) 99
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
SaqAI TTAA 1 cut(s) 256
Sau3AI GATC 2 cut(s) 99, 247
SchI GAGTC 1 cut(s) 59
SduI GDGCHC 2 cut(s) 87, 180
SetI ASST 3 cut(s) 77, 120, 193
SfaNI GCATC 1 cut(s) 152
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
Sse9I AATT 1 cut(s) 28
SsiI CCGC 1 cut(s) 130
SspMI CTAG 1 cut(s) 123
TaaI ACNGT 1 cut(s) 26
TasI AATT 1 cut(s) 28
TatI WGTACW 1 cut(s) 6
Tru1I TTAA 1 cut(s) 256
Tru9I TTAA 1 cut(s) 256
XspI CTAG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.