Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0024466

Physical Location & Seq

Genomic Coordinates Reverse (-)

20188031 .. 20188530

Gene Structure 500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g22580.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGATATATTTTTCAGTGCATGAGGCCACCAAGCAACCACCAACAATATTTGGGGAATTAATAGTCCTTGAGATCCCTATGGTCTCAAAAGTGACTAGCCCACGGGCTCCTCAAGCTGTTTCTTGGGCCAGCCTACCTGTTTCTGCCAAGGTAGTTGCAACAACAGAGATTCCTCCCTCACAAGCTCAAAGGCCAGCTCAGGCTTCTGGCGAGGGCTCCGGCAAATCTCTTCGGCCCACAACACATAAAGTGTCTCATCCTTCAGCCGAAGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0010252 GO:0010279 GO:0016874 GO:0016879 GO:0016881 GO:0042221 GO:0042592 GO:0048878 GO:0050896 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

GH3

Protein Analysis

93

Amino Acids

9.78

Weight (kDa)

6.83

Isoelectric Point (pI)

49.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024466)

Species	Orthologous Gene IDs
malus_domestica	MD05G1129400.v1.1
pyrus_communis	pycom13g19760 pycom13g22580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	67
AcuI	CTGAAG	1 cut(s)	246
AluBI	AGCT	3 cut(s)	116, 185, 197
AluI	AGCT	3 cut(s)	116, 185, 197
Alw26I	GTCTC	2 cut(s)	88, 258
AlwI	GGATC	1 cut(s)	67
AoxI	GGCC	4 cut(s)	24, 126, 191, 233
AseI	ATTAAT	1 cut(s)	59
AspS9I	GGNCC	2 cut(s)	126, 234
BanII	GRGCYC	2 cut(s)	109, 218
BcoDI	GTCTC	2 cut(s)	88, 258
BfaI	CTAG	1 cut(s)	96
BmgT120I	GGNCC	2 cut(s)	126, 234
BmiI	GGNNCC	2 cut(s)	108, 217
Bpu10I	CCTNAGC	1 cut(s)	198
BpuEI	CTTGAG	2 cut(s)	89, 96
BsaI	GGTCTC	1 cut(s)	88
BsaJI	CCNNGG	2 cut(s)	101, 147
BseDI	CCNNGG	2 cut(s)	101, 147
BseGI	GGATG	1 cut(s)	256
BseMII	CTCAG	1 cut(s)	212
BseRI	GAGGAG	1 cut(s)	99
BshFI	GGCC	4 cut(s)	26, 128, 193, 235
BsiSI	CCGG	1 cut(s)	219
BsmAI	GTCTC	2 cut(s)	88, 258
BsnI	GGCC	4 cut(s)	26, 128, 193, 235
Bso31I	GGTCTC	1 cut(s)	88
Bsp1286I	GDGCHC	2 cut(s)	109, 218
Bsp143I	GATC	1 cut(s)	72
BspANI	GGCC	4 cut(s)	26, 128, 193, 235
BspCNI	CTCAG	1 cut(s)	211
BspLI	GGNNCC	2 cut(s)	108, 217
BspPI	GGATC	1 cut(s)	67
BspTNI	GGTCTC	1 cut(s)	88
BssECI	CCNNGG	2 cut(s)	101, 147
BssMI	GATC	1 cut(s)	72
BssT1I	CCWWGG	1 cut(s)	147
Bst6I	CTCTTC	1 cut(s)	234
BstC8I	GCNNGC	2 cut(s)	130, 195
BstDEI	CTNAG	1 cut(s)	198
BstDSI	CCRYGG	1 cut(s)	101
BstF5I	GGATG	1 cut(s)	256
BstKTI	GATC	1 cut(s)	75
BstMAI	GTCTC	2 cut(s)	88, 258
BstMBI	GATC	1 cut(s)	72
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstX2I	RGATCY	1 cut(s)	72
BstYI	RGATCY	1 cut(s)	72
BsuRI	GGCC	4 cut(s)	26, 128, 193, 235
BtgI	CCRYGG	1 cut(s)	101
BtsCI	GGATG	1 cut(s)	256
BtsIMutI	CAGTG	1 cut(s)	21
Cac8I	GCNNGC	2 cut(s)	130, 195
Cfr13I	GGNCC	2 cut(s)	126, 234
CviAII	CATG	1 cut(s)	20
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	1 cut(s)	74
DpnII	GATC	1 cut(s)	72
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
Eco130I	CCWWGG	1 cut(s)	147
Eco24I	GRGCYC	2 cut(s)	109, 218
Eco31I	GGTCTC	1 cut(s)	88
Eco57I	CTGAAG	1 cut(s)	246
EcoT14I	CCWWGG	1 cut(s)	147
EcoT38I	GRGCYC	2 cut(s)	109, 218
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	1 cut(s)	23
FaiI	YATR	4 cut(s)	7, 21, 80, 246
FatI	CATG	1 cut(s)	19
FokI	GGATG	1 cut(s)	243
FriOI	GRGCYC	2 cut(s)	109, 218
FspBI	CTAG	1 cut(s)	96
HaeIII	GGCC	4 cut(s)	26, 128, 193, 235
HapII	CCGG	1 cut(s)	219
Hin1II	CATG	1 cut(s)	23
HinfI	GANTC	1 cut(s)	169
HpaII	CCGG	1 cut(s)	219
HpyAV	CCTTC	1 cut(s)	270
HpyCH4V	TGCA	2 cut(s)	19, 158
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	1 cut(s)	198
Hsp92II	CATG	1 cut(s)	23
Kzo9I	GATC	1 cut(s)	72
LmnI	GCTCC	2 cut(s)	112, 221
LpnPI	CCDG	6 cut(s)	142, 150, 185, 192, 207, 232
MaeI	CTAG	1 cut(s)	96
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	1 cut(s)	74
MboI	GATC	1 cut(s)	72
MboII	GAAGA	1 cut(s)	221
MflI	RGATCY	1 cut(s)	72
MhlI	GDGCHC	2 cut(s)	109, 218
MluCI	AATT	1 cut(s)	56
MnlI	CCTC	5 cut(s)	16, 120, 183, 187, 205
MseI	TTAA	1 cut(s)	59
MspI	CCGG	1 cut(s)	219
MwoI	GCNNNNNNNGC	1 cut(s)	113
NdeII	GATC	1 cut(s)	72
NlaIII	CATG	1 cut(s)	23
NlaIV	GGNNCC	2 cut(s)	108, 217
NmuCI	GTSAC	1 cut(s)	91
PfeI	GAWTC	1 cut(s)	169
PshBI	ATTAAT	1 cut(s)	59
PspN4I	GGNNCC	2 cut(s)	108, 217
PspPI	GGNCC	2 cut(s)	126, 234
PsuI	RGATCY	1 cut(s)	72
SaqAI	TTAA	1 cut(s)	59
Sau3AI	GATC	1 cut(s)	72
Sau96I	GGNCC	2 cut(s)	126, 234
SduI	GDGCHC	2 cut(s)	109, 218
SetI	ASST	5 cut(s)	118, 139, 153, 187, 199
SmlI	CTYRAG	2 cut(s)	68, 111
SmoI	CTYRAG	2 cut(s)	68, 111
Sse9I	AATT	1 cut(s)	56
SspI	AATATT	1 cut(s)	48
SspMI	CTAG	1 cut(s)	96
StyI	CCWWGG	1 cut(s)	147
TasI	AATT	1 cut(s)	56
TfiI	GAWTC	1 cut(s)	169
Tru1I	TTAA	1 cut(s)	59
Tru9I	TTAA	1 cut(s)	59
TscAI	CASTG	1 cut(s)	21
TseFI	GTSAC	1 cut(s)	91
Tsp45I	GTSAC	1 cut(s)	91
TspRI	CASTG	1 cut(s)	21
VspI	ATTAAT	1 cut(s)	59
XspI	CTAG	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.