Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0022383

Physical Location & Seq

Genomic Coordinates Forward (+)

21036440 .. 21037509

Gene Structure 1070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGATGCCAGTCGTGCCTTGCTTCAGGCAAGTAAATGTCTTTCTGGTGATCAAAGTGATCCGCATGGGCGAGCTAGAGGGTACGAGGATCCTCCTTTATAAAGATCATAGCAGTAACTTTCTGAGCTTCGTCAACGGGTTCATTGTCGATTGGTTCCTTGATGGTAGCTCTAAGACTCTTTGCAGTAAGATGGAGCTTCACGTCTTGAACCCACTTCAGGTAGTTTCTTCTAGAGACTTTCAGAGCGAGGGTACACACAAAACGTGGTTAGTTATATGGAAAGCCATAGACATATATCGTAGAACATTCGGTTCTATAGACATGTATTGGTTTAATTTATGCATGAAAGCTACAGGTTTCATGTGTCGAAACTACAGGTTCGATTTAGTTATGAACTCAATAAAGTGTAGTGGATTTGTAGATTGCTTCAGGAACCCAAGTGTGAGTGCTTCAAGACTACGAAAGATAGTCAAGGGTTCAAAGAAACGAAATAATTTATTGAATTTAATTATTAAGACTATTCGGGATCGATCTAAAAGCAAAAATAATTATAACATGCAGGTTAAAATTATTTTAGAATGCCAAAAATTAGCATTGGATTTGAAAAACCACAGCCTCAACATGGTGGGCATGGGTGTCGTGAATAGGGCAAGGCCCTATAAAATTTATTGGGCTTGGATGGTTGCTAGAAGCAGCCTAAATCATGGCCACGGGCCAATCTGGGTAAGCCAAGCCGTGAAGGCTAGTGTGTTATGGGCTGGGTTAGACACATGGGCAAGGCTAAAGGCTTATGGGTGTGCAAATAAACCCCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006935 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009267 GO:0009605 GO:0009628 GO:0009892 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010468 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0019932 GO:0019933 GO:0019935 GO:0023052 GO:0030587 GO:0031152 GO:0031667 GO:0031668 GO:0031669 GO:0032502 GO:0033554 GO:0035556 GO:0036211 GO:0040011 GO:0042221 GO:0042330 GO:0042493 GO:0042594 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0045472 GO:0046677 GO:0048518 GO:0048519 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051409 GO:0051703 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0071704 GO:0090702 GO:0097327 GO:0098630 GO:0098743 GO:0099120 GO:0140096 GO:1901564 GO:1901654 GO:1901700 GO:1904643

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

272

Amino Acids

31.26

Weight (kDa)

10.03

Isoelectric Point (pI)

26.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022383)

Species	Orthologous Gene IDs
malus_domestica	MD01G1047500.v1.1 MD07G1049500.v1.1 MD12G1083500.v1.1
pyrus_communis	pycom13g23540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	99, 552
Acc36I	ACCTGC	1 cut(s)	550
AciI	CCGC	1 cut(s)	61
AclWI	GGATC	4 cut(s)	52, 82, 95, 534
AcoI	YGGCCR	1 cut(s)	706
AcsI	RAATTY	2 cut(s)	502, 663
AcuI	CTGAAG	3 cut(s)	7, 200, 412
AfaI	GTAC	2 cut(s)	82, 253
AfiI	CCNNNNNNNGG	2 cut(s)	217, 622
AflIII	ACRYGT	1 cut(s)	321
AgsI	TTSAA	5 cut(s)	208, 453, 480, 502, 604
AjiI	CACGTC	1 cut(s)	202
AluBI	AGCT	5 cut(s)	73, 126, 168, 196, 350
AluI	AGCT	5 cut(s)	73, 126, 168, 196, 350
Alw26I	GTCTC	1 cut(s)	228
AlwI	GGATC	4 cut(s)	52, 82, 95, 534
AoxI	GGCC	3 cut(s)	653, 706, 713
ApeKI	GCWGC	1 cut(s)	693
ApoI	RAATTY	2 cut(s)	502, 663
AspS9I	GGNCC	2 cut(s)	654, 713
AsuHPI	GGTGA	1 cut(s)	58
BalI	TGGCCA	1 cut(s)	708
BamHI	GGATCC	1 cut(s)	87
BbvI	GCAGC	1 cut(s)	705
BccI	CCATC	3 cut(s)	155, 184, 673
BceAI	ACGGC	1 cut(s)	719
BcgI	CGANNNNNNTGC	2 cut(s)	619, 653
BclI	TGATCA	1 cut(s)	48
BcoDI	GTCTC	1 cut(s)	228
BfaI	CTAG	4 cut(s)	74, 231, 687, 744
BfmI	CTRYAG	3 cut(s)	315, 351, 373
BfuAI	ACCTGC	1 cut(s)	550
BglI	GCCNNNNNGGC	1 cut(s)	740
BisI	GCNGC	1 cut(s)	694
BlsI	GCNGC	1 cut(s)	695
BmgBI	CACGTC	1 cut(s)	202
BmgT120I	GGNCC	2 cut(s)	654, 713
BmiI	GGNNCC	3 cut(s)	89, 155, 434
BmrI	ACTGGG	1 cut(s)	805
BmuI	ACTGGG	1 cut(s)	805
Bsa29I	ATCGAT	1 cut(s)	529
BsaJI	CCNNGG	1 cut(s)	709
Bsc4I	CCNNNNNNNGG	2 cut(s)	217, 622
Bse1I	ACTGG	2 cut(s)	8, 811
BseCI	ATCGAT	1 cut(s)	529
BseDI	CCNNGG	1 cut(s)	709
BseGI	GGATG	1 cut(s)	684
BseLI	CCNNNNNNNGG	2 cut(s)	217, 622
BseMII	CTCAG	1 cut(s)	113
BseNI	ACTGG	2 cut(s)	8, 811
BseXI	GCAGC	1 cut(s)	705
BseYI	CCCAGC	1 cut(s)	758
BshFI	GGCC	3 cut(s)	655, 708, 715
BshVI	ATCGAT	1 cut(s)	529
BslI	CCNNNNNNNGG	2 cut(s)	217, 622
BsmAI	GTCTC	1 cut(s)	228
BsmI	GAATGC	1 cut(s)	584
BsnI	GGCC	3 cut(s)	655, 708, 715
Bsp143I	GATC	6 cut(s)	48, 57, 87, 103, 526, 530
BspACI	CCGC	1 cut(s)	61
BspANI	GGCC	3 cut(s)	655, 708, 715
BspCNI	CTCAG	1 cut(s)	114
BspDI	ATCGAT	1 cut(s)	529
BspLI	GGNNCC	3 cut(s)	89, 155, 434
BspMI	ACCTGC	1 cut(s)	550
BspPI	GGATC	4 cut(s)	52, 82, 95, 534
BsrI	ACTGG	2 cut(s)	8, 811
BssECI	CCNNGG	1 cut(s)	709
BssMI	GATC	6 cut(s)	48, 57, 87, 103, 526, 530
BstC8I	GCNNGC	1 cut(s)	71
BstDEI	CTNAG	2 cut(s)	122, 171
BstDSI	CCRYGG	1 cut(s)	709
BstF5I	GGATG	1 cut(s)	684
BstKTI	GATC	6 cut(s)	51, 60, 90, 106, 529, 533
BstMAI	GTCTC	1 cut(s)	228
BstMBI	GATC	6 cut(s)	48, 57, 87, 103, 526, 530
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 740
BstNSI	RCATGY	2 cut(s)	325, 559
BstSFI	CTRYAG	3 cut(s)	315, 351, 373
BstV1I	GCAGC	1 cut(s)	705
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
Bsu15I	ATCGAT	1 cut(s)	529
BsuRI	GGCC	3 cut(s)	655, 708, 715
BsuTUI	ATCGAT	1 cut(s)	529
BtgI	CCRYGG	1 cut(s)	709
BtrI	CACGTC	1 cut(s)	202
BtsCI	GGATG	1 cut(s)	684
BveI	ACCTGC	1 cut(s)	550
Cac8I	GCNNGC	1 cut(s)	71
Cfr13I	GGNCC	2 cut(s)	654, 713
ClaI	ATCGAT	1 cut(s)	529
Csp6I	GTAC	2 cut(s)	81, 252
CviAII	CATG	9 cut(s)	64, 322, 343, 361, 556, 622, 631, 704, 771
CviQI	GTAC	2 cut(s)	81, 252
DdeI	CTNAG	2 cut(s)	122, 171
DpnI	GATC	6 cut(s)	50, 59, 89, 105, 528, 532
DpnII	GATC	6 cut(s)	48, 57, 87, 103, 526, 530
EaeI	YGGCCR	1 cut(s)	706
Eco57I	CTGAAG	3 cut(s)	7, 200, 412
EcoO109I	RGGNCCY	1 cut(s)	654
EcoT22I	ATGCAT	1 cut(s)	344
FaeI	CATG	9 cut(s)	67, 325, 346, 364, 559, 625, 634, 707, 774
FatI	CATG	9 cut(s)	63, 321, 342, 360, 555, 621, 630, 703, 770
FbaI	TGATCA	1 cut(s)	48
Fnu4HI	GCNGC	1 cut(s)	694
FokI	GGATG	1 cut(s)	691
Fsp4HI	GCNGC	1 cut(s)	694
FspBI	CTAG	4 cut(s)	74, 231, 687, 744
GluI	GCNGC	1 cut(s)	694
GsaI	CCCAGC	1 cut(s)	762
HaeIII	GGCC	3 cut(s)	655, 708, 715
Hin1II	CATG	9 cut(s)	67, 325, 346, 364, 559, 625, 634, 707, 774
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	1 cut(s)	175
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	2 cut(s)	133, 254
Hpy188I	TCNGA	2 cut(s)	123, 243
Hpy188III	TCNNGA	6 cut(s)	205, 231, 430, 453, 524, 640
Hpy8I	GTNNAC	2 cut(s)	133, 254
HpyAV	CCTTC	1 cut(s)	733
HpyCH4IV	ACGT	2 cut(s)	201, 263
HpyCH4V	TGCA	4 cut(s)	183, 342, 559, 800
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 740
HpyF3I	CTNAG	2 cut(s)	122, 171
HpySE526I	ACGT	2 cut(s)	201, 263
Hsp92II	CATG	9 cut(s)	67, 325, 346, 364, 559, 625, 634, 707, 774
Ksp22I	TGATCA	1 cut(s)	48
Kzo9I	GATC	6 cut(s)	48, 57, 87, 103, 526, 530
LmnI	GCTCC	1 cut(s)	193
Lsp1109I	GCAGC	1 cut(s)	705
MaeI	CTAG	4 cut(s)	74, 231, 687, 744
MaeII	ACGT	2 cut(s)	201, 263
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	6 cut(s)	50, 59, 89, 105, 528, 532
MboI	GATC	6 cut(s)	48, 57, 87, 103, 526, 530
MboII	GAAGA	1 cut(s)	219
MflI	RGATCY	1 cut(s)	87
MlsI	TGGCCA	1 cut(s)	708
MluCI	AATT	8 cut(s)	334, 493, 502, 507, 547, 567, 587, 663
MluNI	TGGCCA	1 cut(s)	708
MlyI	GAGTC	1 cut(s)	169
MnlI	CCTC	5 cut(s)	70, 78, 101, 241, 626
Mox20I	TGGCCA	1 cut(s)	708
Mph1103I	ATGCAT	1 cut(s)	344
MscI	TGGCCA	1 cut(s)	708
MseI	TTAA	4 cut(s)	333, 506, 513, 564
Msp20I	TGGCCA	1 cut(s)	708
Mva1269I	GAATGC	1 cut(s)	584
MwoI	GCNNNNNNNGC	2 cut(s)	13, 740
NdeII	GATC	6 cut(s)	48, 57, 87, 103, 526, 530
NlaIII	CATG	9 cut(s)	67, 325, 346, 364, 559, 625, 634, 707, 774
NlaIV	GGNNCC	3 cut(s)	89, 155, 434
NsiI	ATGCAT	1 cut(s)	344
NspI	RCATGY	2 cut(s)	325, 559
PciI	ACATGT	1 cut(s)	321
PctI	GAATGC	1 cut(s)	584
PkrI	GCNGC	1 cut(s)	695
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PscI	ACATGT	1 cut(s)	321
PsiI	TTATAA	2 cut(s)	99, 552
PspFI	CCCAGC	1 cut(s)	758
PspN4I	GGNNCC	3 cut(s)	89, 155, 434
PspPI	GGNCC	2 cut(s)	654, 713
PsuI	RGATCY	1 cut(s)	87
RsaI	GTAC	2 cut(s)	82, 253
RsaNI	GTAC	2 cut(s)	81, 252
SaqAI	TTAA	4 cut(s)	333, 506, 513, 564
SatI	GCNGC	1 cut(s)	694
Sau3AI	GATC	6 cut(s)	48, 57, 87, 103, 526, 530
Sau96I	GGNCC	2 cut(s)	654, 713
SchI	GAGTC	1 cut(s)	169
SfcI	CTRYAG	3 cut(s)	315, 351, 373
Sse9I	AATT	8 cut(s)	334, 493, 502, 507, 547, 567, 587, 663
SsiI	CCGC	1 cut(s)	61
SspMI	CTAG	4 cut(s)	74, 231, 687, 744
TaiI	ACGT	2 cut(s)	204, 266
TaqI	TCGA	4 cut(s)	147, 367, 381, 529
TasI	AATT	8 cut(s)	334, 493, 502, 507, 547, 567, 587, 663
Tru1I	TTAA	4 cut(s)	333, 506, 513, 564
Tru9I	TTAA	4 cut(s)	333, 506, 513, 564
TseI	GCWGC	1 cut(s)	693
TspDTI	ATGAA	4 cut(s)	130, 349, 359, 407
XapI	RAATTY	2 cut(s)	502, 663
XbaI	TCTAGA	1 cut(s)	230
XceI	RCATGY	2 cut(s)	325, 559
XspI	CTAG	4 cut(s)	74, 231, 687, 744
Zsp2I	ATGCAT	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.