Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0020386

Physical Location & Seq

Genomic Coordinates Reverse (-)

24691479 .. 24693402

Gene Structure 1924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g28690.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGGATTTAGACTTGGGAGGTACACTTATTATTGGGCATTTTACTTCCAAATATCAGGTCGCAGATGTTTACAATTCTAAATTTCTTGTTTGTAATGTTGAATTCTTGCAAAATTGTACTACTGATCTTCGGGACGATATTGAATCGGTTGCTTCAAATTTTAGTGATAAGGAAAGTGATGAATCCAAGATATTGGCTATGGGTTTTGTGGGTTTATATTATTGTTGCAGTACTGGAAAATTTCTTCTGGCAGAAGATTTACTTGTGAAAATGTCTGAAAGAAATGTAACTGATTGTATTTCTTGGAATATTGTTATCAGATGGCTTTCCGAGAATGCAAGGATTAGGGTAGTGCTGGAACTTCTTTGTAGAATGGTGATTTCTTGTTCTCTTTCTGACTGTGACACATACTCGGCTCTAGTCGTTTGCCACTACAAAATGAGCAACTACAAAAATGCTATGGATATATTTGATCATATTCATGCCAAAAGCTGGGTTTTGGATCATACATCTTATTTTGAACTTGTCAAAGGTCTTGGCCTAGGGGAAATGGGTCATGAGGATACAACAATTGGCCTATTATTCCGGTACTTCTTCTATTCGTTCAACTTACTCAACTATTATGCTTGGATTGTCAAAATTAGACAAGGTAAAAGATATGTGGGTAATCCTCCCAAAAAAGCTGGTGAAGGGTTGGGTTACAATCTAGATTTGGATGCATACTGCGTGCTCATACAAAGCATGAGTGTGCAGAATCGAATGAAAGAATGCTTATTGCTTTTCAATATGATGGTCGATAAGGGTATTTGTGATAAGGGTGGTGGCTCAAAATTTAGAATCGCTAATGTTCCTAATGCTCCATTACATCTAAGTTCCATGACGGGCAGTTTAAGTGAACTTTCTACTGCCACCAGACATTTCTCAACCGAAAACAAGATCGGTGTTGGGAGCTTTGGCATTGTCTATAAAGGCAAGCTTTCGGGCGGTCGTAACGTGGCCATAAAGAGGAGAGATACAAGTACCAAGACCAAGAAATTTCAGGGGAAAGAGAGCGCATTTGTCTCCGAATTAACACTGCTGTCCCGGTTCCACCATGAGCACTTGGTGAAGCTAGTGGGATCCTATGAAGTGGACAATAAGCGGCTTTTGGGTTGTGAGTACATGAGCAATGGTTCACTTCATGATCACTTGCATGGCAAGAATAATGTGGAGGAAAATAGTAGCATTGTGAATTCTTGGAAAATAAGGATAAAAATTGCGCTTGATGCAGCCAAGGGAATAGAGTATCTACATTACAACTTTCATGTCTGGTTTATTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0042802 GO:0042803 GO:0046983

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase RCC1_2

Protein Analysis

441

Amino Acids

49.81

Weight (kDa)

8.12

Isoelectric Point (pI)

35.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020386)

Species	Orthologous Gene IDs
malus_domestica	MD01G1097100.v1.1
pyrus_communis	pycom09g14330 pycom12g02830 pycom13g19400 pycom13g28690 pycom15g18780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	492
AciI	CCGC	2 cut(s)	984, 1141
AclWI	GGATC	3 cut(s)	510, 1113, 1126
AcoI	YGGCCR	1 cut(s)	996
AcsI	RAATTY	7 cut(s)	80, 101, 157, 239, 830, 1034, 1231
AdeI	CACNNNGTG	1 cut(s)	1105
AfaI	GTAC	6 cut(s)	22, 118, 232, 590, 1021, 1160
AfiI	CCNNNNNNNGG	2 cut(s)	492, 1005
AgsI	TTSAA	6 cut(s)	101, 143, 156, 521, 607, 784
AluBI	AGCT	5 cut(s)	492, 683, 951, 976, 1111
AluI	AGCT	5 cut(s)	492, 683, 951, 976, 1111
Alw21I	GWGCWC	2 cut(s)	732, 1101
Alw26I	GTCTC	1 cut(s)	1066
AlwI	GGATC	3 cut(s)	510, 1113, 1126
AoxI	GGCC	3 cut(s)	538, 574, 996
ApeKI	GCWGC	1 cut(s)	1268
ApoI	RAATTY	7 cut(s)	80, 101, 157, 239, 830, 1034, 1231
ArsI	GACNNNNNNTTYG	2 cut(s)	42, 74
AspA2I	CCTAGG	1 cut(s)	541
AspLEI	GCGC	2 cut(s)	1055, 1261
AsuC2I	CCSGG	1 cut(s)	1084
AsuHPI	GGTGA	3 cut(s)	388, 698, 1117
AvrII	CCTAGG	1 cut(s)	541
BalI	TGGCCA	1 cut(s)	998
BamHI	GGATCC	1 cut(s)	1118
Bbv12I	GWGCWC	2 cut(s)	732, 1101
BbvI	GCAGC	1 cut(s)	1280
BccI	CCATC	2 cut(s)	315, 784
BciVI	GTATCC	1 cut(s)	556
BclI	TGATCA	2 cut(s)	472, 1183
BcnI	CCSGG	1 cut(s)	1084
BcoDI	GTCTC	1 cut(s)	1066
BfaI	CTAG	5 cut(s)	419, 542, 707, 1112, 1321
BfuI	GTATCC	1 cut(s)	556
BisI	GCNGC	2 cut(s)	1142, 1269
BlnI	CCTAGG	1 cut(s)	541
BlsI	GCNGC	2 cut(s)	1143, 1270
BmcAI	AGTACT	1 cut(s)	232
Bme1390I	CCNGG	1 cut(s)	1084
BmiI	GGNNCC	2 cut(s)	1088, 1120
BmrFI	CCNGG	1 cut(s)	1084
BmsI	GCATC	2 cut(s)	706, 1255
BpuMI	CCSGG	1 cut(s)	1084
BsaJI	CCNNGG	2 cut(s)	541, 1272
BsaWI	WCCGGW	1 cut(s)	585
Bsc4I	CCNNNNNNNGG	2 cut(s)	492, 1005
Bse1I	ACTGG	1 cut(s)	238
Bse3DI	GCAATG	1 cut(s)	1174
BseDI	CCNNGG	2 cut(s)	541, 1272
BseGI	GGATG	1 cut(s)	721
BseLI	CCNNNNNNNGG	2 cut(s)	492, 1005
BseMI	GCAATG	1 cut(s)	1174
BseNI	ACTGG	1 cut(s)	238
BseRI	GAGGAG	1 cut(s)	1021
BseXI	GCAGC	1 cut(s)	1280
BseYI	CCCAGC	1 cut(s)	492
BsgI	GTGCAG	1 cut(s)	770
Bsh1285I	CGRYCG	1 cut(s)	988
BshFI	GGCC	3 cut(s)	540, 576, 998
BsiEI	CGRYCG	1 cut(s)	988
BsiHKAI	GWGCWC	2 cut(s)	732, 1101
BsiSI	CCGG	2 cut(s)	586, 1084
BslFI	GGGAC	2 cut(s)	146, 1066
BslI	CCNNNNNNNGG	2 cut(s)	492, 1005
BsmAI	GTCTC	1 cut(s)	1066
BsmFI	GGGAC	2 cut(s)	146, 1066
BsmI	GAATGC	2 cut(s)	340, 773
BsnI	GGCC	3 cut(s)	540, 576, 998
Bsp1286I	GDGCHC	2 cut(s)	732, 1101
Bsp143I	GATC	6 cut(s)	124, 472, 502, 936, 1118, 1183
BspACI	CCGC	2 cut(s)	984, 1141
BspANI	GGCC	3 cut(s)	540, 576, 998
BspHI	TCATGA	2 cut(s)	556, 1180
BspLI	GGNNCC	2 cut(s)	1088, 1120
BspPI	GGATC	3 cut(s)	510, 1113, 1126
BsrDI	GCAATG	1 cut(s)	1174
BsrI	ACTGG	1 cut(s)	238
BssECI	CCNNGG	2 cut(s)	541, 1272
BssMI	GATC	6 cut(s)	124, 472, 502, 936, 1118, 1183
BssT1I	CCWWGG	2 cut(s)	541, 1272
Bst4CI	ACNGT	1 cut(s)	401
BstC8I	GCNNGC	2 cut(s)	728, 974
BstDEI	CTNAG	1 cut(s)	869
BstF5I	GGATG	1 cut(s)	721
BstHHI	GCGC	2 cut(s)	1055, 1261
BstKTI	GATC	6 cut(s)	127, 475, 505, 939, 1121, 1186
BstMAI	GTCTC	1 cut(s)	1066
BstMBI	GATC	6 cut(s)	124, 472, 502, 936, 1118, 1183
BstMCI	CGRYCG	1 cut(s)	988
BstMWI	GCNNNNNNNGC	1 cut(s)	1265
BstSCI	CCNGG	1 cut(s)	1082
BstV1I	GCAGC	1 cut(s)	1280
BstX2I	RGATCY	1 cut(s)	1118
BstXI	CCANNNNNNTGG	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	1118
BsuI	GTATCC	1 cut(s)	556
BsuRI	GGCC	3 cut(s)	540, 576, 998
BtsCI	GGATG	1 cut(s)	721
BtsI	GCAGTG	1 cut(s)	1073
BtsIMutI	CAGTG	1 cut(s)	1073
Cac8I	GCNNGC	2 cut(s)	728, 974
CciI	TCATGA	2 cut(s)	556, 1180
CfoI	GCGC	2 cut(s)	1055, 1261
Csp6I	GTAC	6 cut(s)	21, 117, 231, 589, 1020, 1159
CviAII	CATG	9 cut(s)	482, 557, 742, 877, 1094, 1162, 1181, 1193, 1304
CviQI	GTAC	6 cut(s)	21, 117, 231, 589, 1020, 1159
DdeI	CTNAG	1 cut(s)	869
DpnI	GATC	6 cut(s)	126, 474, 504, 938, 1120, 1185
DpnII	GATC	6 cut(s)	124, 472, 502, 936, 1118, 1183
DraIII	CACNNNGTG	1 cut(s)	1105
EaeI	YGGCCR	1 cut(s)	996
Eco130I	CCWWGG	2 cut(s)	541, 1272
EcoRI	GAATTC	2 cut(s)	101, 1231
EcoT14I	CCWWGG	2 cut(s)	541, 1272
EcoT22I	ATGCAT	1 cut(s)	721
ErhI	CCWWGG	2 cut(s)	541, 1272
FaeI	CATG	9 cut(s)	485, 560, 745, 880, 1097, 1165, 1184, 1196, 1307
FalI	AAGNNNNNCTT	4 cut(s)	246, 278, 960, 992
FaqI	GGGAC	2 cut(s)	146, 1066
FatI	CATG	9 cut(s)	481, 556, 741, 876, 1093, 1161, 1180, 1192, 1303
FbaI	TGATCA	2 cut(s)	472, 1183
Fnu4HI	GCNGC	2 cut(s)	1142, 1269
FokI	GGATG	1 cut(s)	728
Fsp4HI	GCNGC	2 cut(s)	1142, 1269
FspBI	CTAG	5 cut(s)	419, 542, 707, 1112, 1321
GlaI	GCGC	2 cut(s)	1054, 1260
GluI	GCNGC	2 cut(s)	1142, 1269
GsaI	CCCAGC	1 cut(s)	496
HaeIII	GGCC	3 cut(s)	540, 576, 998
HapII	CCGG	2 cut(s)	586, 1084
HhaI	GCGC	2 cut(s)	1055, 1261
Hin1II	CATG	9 cut(s)	485, 560, 745, 880, 1097, 1165, 1184, 1196, 1307
Hin6I	GCGC	2 cut(s)	1053, 1259
HinP1I	GCGC	2 cut(s)	1053, 1259
HindIII	AAGCTT	1 cut(s)	974
HinfI	GANTC	4 cut(s)	143, 182, 754, 837
HpaII	CCGG	2 cut(s)	586, 1084
HphI	GGTGA	3 cut(s)	388, 698, 1117
Hpy166II	GTNNAC	5 cut(s)	23, 70, 896, 1132, 1175
Hpy188I	TCNGA	5 cut(s)	277, 320, 331, 397, 1066
Hpy188III	TCNNGA	4 cut(s)	131, 557, 707, 1181
Hpy8I	GTNNAC	5 cut(s)	23, 70, 896, 1132, 1175
HpyAV	CCTTC	1 cut(s)	683
HpyCH4III	ACNGT	1 cut(s)	401
HpyCH4IV	ACGT	1 cut(s)	993
HpyCH4V	TGCA	7 cut(s)	109, 228, 338, 719, 751, 1192, 1268
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1265
HpyF3I	CTNAG	1 cut(s)	869
HpySE526I	ACGT	1 cut(s)	993
Hsp92II	CATG	9 cut(s)	485, 560, 745, 880, 1097, 1165, 1184, 1196, 1307
HspAI	GCGC	2 cut(s)	1053, 1259
Ksp22I	TGATCA	2 cut(s)	472, 1183
Kzo9I	GATC	6 cut(s)	124, 472, 502, 936, 1118, 1183
LmnI	GCTCC	2 cut(s)	862, 948
Lsp1109I	GCAGC	1 cut(s)	1280
LweI	GCATC	2 cut(s)	706, 1255
MaeI	CTAG	5 cut(s)	419, 542, 707, 1112, 1321
MaeII	ACGT	1 cut(s)	993
MaeIII	GTNAC	4 cut(s)	286, 401, 698, 989
MalI	GATC	6 cut(s)	126, 474, 504, 938, 1120, 1185
MboI	GATC	6 cut(s)	124, 472, 502, 936, 1118, 1183
MboII	GAAGA	4 cut(s)	119, 236, 266, 586
MfeI	CAATTG	1 cut(s)	570
MflI	RGATCY	1 cut(s)	1118
MhlI	GDGCHC	2 cut(s)	732, 1101
MlsI	TGGCCA	1 cut(s)	998
MluNI	TGGCCA	1 cut(s)	998
MnlI	CCTC	5 cut(s)	11, 553, 681, 999, 1204
Mox20I	TGGCCA	1 cut(s)	998
Mph1103I	ATGCAT	1 cut(s)	721
MscI	TGGCCA	1 cut(s)	998
MseI	TTAA	3 cut(s)	890, 1070, 1317
MslI	CAYNNNNRTG	3 cut(s)	480, 746, 1191
Msp20I	TGGCCA	1 cut(s)	998
MspI	CCGG	2 cut(s)	586, 1084
MspR9I	CCNGG	1 cut(s)	1084
MunI	CAATTG	1 cut(s)	570
Mva1269I	GAATGC	2 cut(s)	340, 773
MwoI	GCNNNNNNNGC	1 cut(s)	1265
NciI	CCSGG	1 cut(s)	1084
NdeII	GATC	6 cut(s)	124, 472, 502, 936, 1118, 1183
NlaIII	CATG	9 cut(s)	485, 560, 745, 880, 1097, 1165, 1184, 1196, 1307
NlaIV	GGNNCC	2 cut(s)	1088, 1120
NmeAIII	GCCGAG	1 cut(s)	392
NmuCI	GTSAC	1 cut(s)	401
NsiI	ATGCAT	1 cut(s)	721
PagI	TCATGA	2 cut(s)	556, 1180
PctI	GAATGC	2 cut(s)	340, 773
PfeI	GAWTC	4 cut(s)	143, 182, 754, 837
PflMI	CCANNNNNTGG	1 cut(s)	492
PkrI	GCNGC	2 cut(s)	1143, 1270
PspFI	CCCAGC	1 cut(s)	492
PspN4I	GGNNCC	2 cut(s)	1088, 1120
PsuI	RGATCY	1 cut(s)	1118
RsaI	GTAC	6 cut(s)	22, 118, 232, 590, 1021, 1160
RsaNI	GTAC	6 cut(s)	21, 117, 231, 589, 1020, 1159
RseI	CAYNNNNRTG	3 cut(s)	480, 746, 1191
SaqAI	TTAA	3 cut(s)	890, 1070, 1317
SatI	GCNGC	2 cut(s)	1142, 1269
Sau3AI	GATC	6 cut(s)	124, 472, 502, 936, 1118, 1183
ScaI	AGTACT	1 cut(s)	232
ScrFI	CCNGG	1 cut(s)	1084
SduI	GDGCHC	2 cut(s)	732, 1101
SfaNI	GCATC	2 cut(s)	706, 1255
SmiMI	CAYNNNNRTG	3 cut(s)	480, 746, 1191
SsiI	CCGC	2 cut(s)	984, 1141
SspI	AATATT	1 cut(s)	310
SspMI	CTAG	5 cut(s)	419, 542, 707, 1112, 1321
StyD4I	CCNGG	1 cut(s)	1082
StyI	CCWWGG	2 cut(s)	541, 1272
TaaI	ACNGT	1 cut(s)	401
TaiI	ACGT	1 cut(s)	996
TaqI	TCGA	2 cut(s)	757, 795
TatI	WGTACW	3 cut(s)	116, 230, 1158
TauI	GCSGC	1 cut(s)	1144
TfiI	GAWTC	4 cut(s)	143, 182, 754, 837
Tru1I	TTAA	3 cut(s)	890, 1070, 1317
Tru9I	TTAA	3 cut(s)	890, 1070, 1317
TscAI	CASTG	1 cut(s)	1080
TseFI	GTSAC	1 cut(s)	401
TseI	GCWGC	1 cut(s)	1268
Tsp45I	GTSAC	1 cut(s)	401
TspDTI	ATGAA	6 cut(s)	195, 470, 776, 1140, 1169, 1292
TspRI	CASTG	1 cut(s)	1080
Van91I	CCANNNNNTGG	1 cut(s)	492
XapI	RAATTY	7 cut(s)	80, 101, 157, 239, 830, 1034, 1231
XbaI	TCTAGA	1 cut(s)	706
XmaJI	CCTAGG	1 cut(s)	541
XspI	CTAG	5 cut(s)	419, 542, 707, 1112, 1321
ZrmI	AGTACT	1 cut(s)	232
Zsp2I	ATGCAT	1 cut(s)	721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.