pycom13g28920

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Reverse (-)
25222129 .. 25222997
869 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g28920.1

Sequence Viewer

Length: 252 bp
ATGGCTGACTTAAACCCGGGTATACTAATAGATATTGTGGATGAAGAATGGATGAGAAGCACTCTTCCTGATGACGAGCTTCCCCTACCACCAGTGCTTGTTGTACGGACTGATGACACTGAGGATTCCACGATCAAGAGACTCAACAAGTTGATGCGGATGGTTGGCATGATCTTGCATTACCTTCCCAGTGATTTTTCCTTTTCTTTTGGCCGTAAGAATGTGTGTAATTTAGTGGCTGTGTCGGCTTAA

Protein Analysis

84

Amino Acids

9.38

Weight (kDa)

4.55

Isoelectric Point (pI)

47.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020858)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73177 AT1G73177
pyrus_communis pycom13g28920
rosa_roxburghii Rroxscaffold_5G00333560
rosa_samantha Rh4CG019900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 22
AciI CCGC 1 cut(s) 157
AcoI YGGCCR 1 cut(s) 211
AfaI GTAC 1 cut(s) 105
AluBI AGCT 1 cut(s) 79
AluI AGCT 1 cut(s) 79
Alw26I GTCTC 1 cut(s) 133
Ama87I CYCGRG 1 cut(s) 16
AoxI GGCC 1 cut(s) 211
AsuC2I CCSGG 2 cut(s) 17, 18
AvaI CYCGRG 1 cut(s) 16
BccI CCATC 1 cut(s) 154
BceAI ACGGC 1 cut(s) 198
BcnI CCSGG 2 cut(s) 17, 18
BcoDI GTCTC 1 cut(s) 133
Bme1390I CCNGG 2 cut(s) 17, 18
BmeT110I CYCGRG 1 cut(s) 16
BmrFI CCNGG 2 cut(s) 17, 18
BmrI ACTGGG 1 cut(s) 183
BmsI GCATC 1 cut(s) 144
BmuI ACTGGG 1 cut(s) 183
BplI GAGNNNNNCTC 2 cut(s) 46, 78
BpuMI CCSGG 2 cut(s) 17, 18
BsaJI CCNNGG 1 cut(s) 16
Bse1I ACTGG 2 cut(s) 92, 189
BseDI CCNNGG 1 cut(s) 16
BseGI GGATG 3 cut(s) 46, 57, 165
BseMII CTCAG 1 cut(s) 111
BseNI ACTGG 2 cut(s) 92, 189
BshFI GGCC 1 cut(s) 213
BsiHKCI CYCGRG 1 cut(s) 16
BsiSI CCGG 1 cut(s) 17
BsmAI GTCTC 1 cut(s) 133
BsnI GGCC 1 cut(s) 213
BsoBI CYCGRG 1 cut(s) 16
Bsp143I GATC 2 cut(s) 132, 171
BspACI CCGC 1 cut(s) 157
BspANI GGCC 1 cut(s) 213
BspCNI CTCAG 1 cut(s) 112
BsrI ACTGG 2 cut(s) 92, 189
BssECI CCNNGG 1 cut(s) 16
BssMI GATC 2 cut(s) 132, 171
BssNAI GTATAC 1 cut(s) 23
Bst1107I GTATAC 1 cut(s) 23
Bst6I CTCTTC 1 cut(s) 69
BstDEI CTNAG 1 cut(s) 120
BstF5I GGATG 3 cut(s) 46, 57, 165
BstKTI GATC 2 cut(s) 135, 174
BstMAI GTCTC 1 cut(s) 133
BstMBI GATC 2 cut(s) 132, 171
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstSCI CCNGG 2 cut(s) 15, 16
BstZ17I GTATAC 1 cut(s) 23
BsuRI GGCC 1 cut(s) 213
BtsCI GGATG 3 cut(s) 46, 57, 165
BtsIMutI CAGTG 3 cut(s) 99, 117, 196
Cfr9I CCCGGG 1 cut(s) 16
Csp6I GTAC 1 cut(s) 104
CviAII CATG 1 cut(s) 169
CviJI RGCY 5 cut(s) 5, 79, 213, 239, 248
CviKI_1 RGCY 5 cut(s) 5, 79, 213, 239, 248
CviQI GTAC 1 cut(s) 104
DdeI CTNAG 1 cut(s) 120
DpnI GATC 2 cut(s) 134, 173
DpnII GATC 2 cut(s) 132, 171
EaeI YGGCCR 1 cut(s) 211
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
Eco88I CYCGRG 1 cut(s) 16
FaeI CATG 1 cut(s) 172
FaiI YATR 2 cut(s) 23, 170
FatI CATG 1 cut(s) 168
FblI GTMKAC 1 cut(s) 22
FokI GGATG 3 cut(s) 53, 64, 172
HaeIII GGCC 1 cut(s) 213
HapII CCGG 1 cut(s) 17
Hin1II CATG 1 cut(s) 172
HinfI GANTC 2 cut(s) 125, 141
HpaII CCGG 1 cut(s) 17
Hpy166II GTNNAC 1 cut(s) 23
Hpy188III TCNNGA 2 cut(s) 68, 136
Hpy8I GTNNAC 1 cut(s) 23
HpyAV CCTTC 1 cut(s) 194
HpyCH4V TGCA 1 cut(s) 178
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HpyF3I CTNAG 1 cut(s) 120
Hsp92II CATG 1 cut(s) 172
Kzo9I GATC 2 cut(s) 132, 171
LpnPI CCDG 4 cut(s) 30, 81, 105, 202
LweI GCATC 1 cut(s) 144
MalI GATC 2 cut(s) 134, 173
MboI GATC 2 cut(s) 132, 171
MboII GAAGA 2 cut(s) 56, 56
MluCI AATT 1 cut(s) 229
MlyI GAGTC 1 cut(s) 135
MnlI CCTC 1 cut(s) 115
MseI TTAA 2 cut(s) 11, 250
MspI CCGG 1 cut(s) 17
MspR9I CCNGG 2 cut(s) 17, 18
MwoI GCNNNNNNNGC 1 cut(s) 245
NciI CCSGG 2 cut(s) 17, 18
NdeII GATC 2 cut(s) 132, 171
NlaIII CATG 1 cut(s) 172
PfeI GAWTC 1 cut(s) 125
PleI GAGTC 1 cut(s) 135
PpsI GAGTC 1 cut(s) 135
RsaI GTAC 1 cut(s) 105
RsaNI GTAC 1 cut(s) 104
SaqAI TTAA 2 cut(s) 11, 250
Sau3AI GATC 2 cut(s) 132, 171
SchI GAGTC 1 cut(s) 135
ScrFI CCNGG 2 cut(s) 17, 18
SetI ASST 2 cut(s) 81, 186
SfaNI GCATC 1 cut(s) 144
SmaI CCCGGG 1 cut(s) 18
Sse9I AATT 1 cut(s) 229
SsiI CCGC 1 cut(s) 157
StyD4I CCNGG 2 cut(s) 15, 16
TasI AATT 1 cut(s) 229
TfiI GAWTC 1 cut(s) 125
Tru1I TTAA 2 cut(s) 11, 250
Tru9I TTAA 2 cut(s) 11, 250
TscAI CASTG 3 cut(s) 99, 124, 196
TspDTI ATGAA 1 cut(s) 57
TspGWI ACGGA 1 cut(s) 121
TspMI CCCGGG 1 cut(s) 16
TspRI CASTG 3 cut(s) 99, 124, 196
XmaI CCCGGG 1 cut(s) 16
XmiI GTMKAC 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.