Rroxscaffold_5G00333560

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
998092 .. 998577
486 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_5G00333560.1

Sequence Viewer

Length: 225 bp
ATGGCTGAATTAAACCTGGGTATACTAATAGATGTTGTGGATGAAGAATGGATGAAAGACGCTCTTCCTGATGATGATCTTCCCCTGCCCCCAATGCTGGTTATAAGGACTGATGACACCGAGGATTCAATCAATACTATAGCAAGTGAGGATATTCTTGTGTTCAGCAACTATAAGGGGAATCACTTTTGGCTTGCTCATTTGAAATATTTCGGAGGGAAATGA

Protein Analysis

74

Amino Acids

8.42

Weight (kDa)

4.14

Isoelectric Point (pI)

33.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020858)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73177 AT1G73177
pyrus_communis pycom13g28920
rosa_roxburghii Rroxscaffold_5G00333560
rosa_samantha Rh4CG019900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 104
AccI GTMKAC 1 cut(s) 22
AfiI CCNNNNNNNGG 1 cut(s) 97
AgsI TTSAA 2 cut(s) 129, 205
AjnI CCWGG 1 cut(s) 15
Asp700I GAANNNNTTC 1 cut(s) 209
BciT130I CCWGG 1 cut(s) 17
BfmI CTRYAG 1 cut(s) 138
Bme1390I CCNGG 1 cut(s) 17
BmrFI CCNGG 1 cut(s) 17
BsaBI GATNNNNATC 1 cut(s) 75
BsaJI CCNNGG 2 cut(s) 16, 120
Bsc4I CCNNNNNNNGG 1 cut(s) 97
Bse8I GATNNNNATC 1 cut(s) 75
BseBI CCWGG 1 cut(s) 17
BseDI CCNNGG 2 cut(s) 16, 120
BseGI GGATG 2 cut(s) 46, 57
BseJI GATNNNNATC 1 cut(s) 75
BseLI CCNNNNNNNGG 1 cut(s) 97
BslI CCNNNNNNNGG 1 cut(s) 97
Bsp143I GATC 1 cut(s) 76
BspQI GCTCTTC 1 cut(s) 69
BssECI CCNNGG 2 cut(s) 16, 120
BssMI GATC 1 cut(s) 76
BssNAI GTATAC 1 cut(s) 23
Bst1107I GTATAC 1 cut(s) 23
Bst2UI CCWGG 1 cut(s) 17
Bst6I CTCTTC 1 cut(s) 69
BstC8I GCNNGC 1 cut(s) 195
BstF5I GGATG 2 cut(s) 46, 57
BstKTI GATC 1 cut(s) 79
BstMBI GATC 1 cut(s) 76
BstMWI GCNNNNNNNGC 1 cut(s) 94
BstNI CCWGG 1 cut(s) 17
BstSCI CCNGG 1 cut(s) 15
BstSFI CTRYAG 1 cut(s) 138
BstZ17I GTATAC 1 cut(s) 23
BtsCI GGATG 2 cut(s) 46, 57
Cac8I GCNNGC 1 cut(s) 195
CseI GACGC 1 cut(s) 68
CviJI RGCY 2 cut(s) 5, 193
CviKI_1 RGCY 2 cut(s) 5, 193
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
EcoRII CCWGG 1 cut(s) 15
FaiI YATR 4 cut(s) 23, 104, 140, 174
FalI AAGNNNNNCTT 2 cut(s) 48, 80
FblI GTMKAC 1 cut(s) 22
FokI GGATG 2 cut(s) 53, 64
HgaI GACGC 1 cut(s) 68
HinfI GANTC 2 cut(s) 125, 181
Hpy166II GTNNAC 1 cut(s) 23
Hpy188I TCNGA 1 cut(s) 215
Hpy188III TCNNGA 1 cut(s) 68
Hpy8I GTNNAC 1 cut(s) 23
HpyF10VI GCNNNNNNNGC 1 cut(s) 94
Kzo9I GATC 1 cut(s) 76
LguI GCTCTTC 1 cut(s) 69
LpnPI CCDG 5 cut(s) 2, 29, 81, 83, 98
MalI GATC 1 cut(s) 78
MboI GATC 1 cut(s) 76
MboII GAAGA 3 cut(s) 56, 56, 71
MluCI AATT 1 cut(s) 8
MnlI CCTC 3 cut(s) 115, 142, 209
MroXI GAANNNNTTC 1 cut(s) 209
MseI TTAA 1 cut(s) 11
MspR9I CCNGG 1 cut(s) 17
MvaI CCWGG 1 cut(s) 17
MwoI GCNNNNNNNGC 1 cut(s) 94
NdeII GATC 1 cut(s) 76
PciSI GCTCTTC 1 cut(s) 69
PdmI GAANNNNTTC 1 cut(s) 209
PfeI GAWTC 2 cut(s) 125, 181
PsiI TTATAA 1 cut(s) 104
Psp6I CCWGG 1 cut(s) 15
PspGI CCWGG 1 cut(s) 15
SapI GCTCTTC 1 cut(s) 69
SaqAI TTAA 1 cut(s) 11
Sau3AI GATC 1 cut(s) 76
ScrFI CCNGG 1 cut(s) 17
SetI ASST 1 cut(s) 18
SfcI CTRYAG 1 cut(s) 138
SgeI CNNG 9 cut(s) 28, 29, 80, 97, 110, 133, 156, 170, 206
Sse9I AATT 1 cut(s) 8
SspI AATATT 1 cut(s) 209
StyD4I CCNGG 1 cut(s) 15
TasI AATT 1 cut(s) 8
TfiI GAWTC 2 cut(s) 125, 181
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TspDTI ATGAA 2 cut(s) 57, 68
XmiI GTMKAC 1 cut(s) 22
XmnI GAANNNNTTC 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.