Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0020858

Physical Location & Seq

Genomic Coordinates Forward (+)

3813420 .. 3825764

Gene Structure 12345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG019900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 180 bp

ATGGCCGAGTTAAACCTGGGTATACTTATAGATGTTGTGGATGAAGAATGGATGAAAGACACTCTTCCAGATGACGATCTTCCCCTGCCGCCAATGCTGGTTATAAGGACTGATGACACCGAGGATTCAAGTGCTCAGCGAAGAGCAGCATCTTACGATGTTTGTGACCAGTTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000152 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005680 GO:0006139 GO:0006351 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009555 GO:0009791 GO:0009987 GO:0010152 GO:0010229 GO:0010467 GO:0016070 GO:0018130 GO:0019438 GO:0021700 GO:0022414 GO:0031461 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0061614 GO:0071704 GO:0090304 GO:0090567 GO:0097659 GO:0099402 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04114 ko04120 ko04914 map04110 map04114 map04120 map04914

Pfam Domains

Protein Families

Apc13p

Protein Analysis

59

Amino Acids

6.66

Weight (kDa)

4.05

Isoelectric Point (pI)

53.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73177 AT1G73177
pyrus_communis	pycom13g28920
rosa_roxburghii	Rroxscaffold_5G00333560
rosa_samantha	Rh4CG019900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	104
AccI	GTMKAC	1 cut(s)	22
AciI	CCGC	1 cut(s)	89
AcoI	YGGCCR	1 cut(s)	3
AgsI	TTSAA	1 cut(s)	129
AjnI	CCWGG	1 cut(s)	15
Alw21I	GWGCWC	1 cut(s)	136
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	146
Bbv12I	GWGCWC	1 cut(s)	136
BbvI	GCAGC	1 cut(s)	158
BciT130I	CCWGG	1 cut(s)	17
BisI	GCNGC	2 cut(s)	89, 147
BlpI	GCTNAGC	1 cut(s)	135
BlsI	GCNGC	2 cut(s)	90, 148
Bme1390I	CCNGG	1 cut(s)	17
BmrFI	CCNGG	1 cut(s)	17
BmsI	GCATC	1 cut(s)	158
Bpu1102I	GCTNAGC	1 cut(s)	135
BsaBI	GATNNNNATC	1 cut(s)	75
BsaJI	CCNNGG	2 cut(s)	16, 120
Bse1I	ACTGG	1 cut(s)	169
Bse8I	GATNNNNATC	1 cut(s)	75
BseBI	CCWGG	1 cut(s)	17
BseDI	CCNNGG	2 cut(s)	16, 120
BseGI	GGATG	2 cut(s)	46, 57
BseJI	GATNNNNATC	1 cut(s)	75
BseMII	CTCAG	1 cut(s)	149
BseNI	ACTGG	1 cut(s)	169
BseXI	GCAGC	1 cut(s)	158
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	136
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	136
Bsp143I	GATC	1 cut(s)	76
Bsp1720I	GCTNAGC	1 cut(s)	135
BspACI	CCGC	1 cut(s)	89
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	148
BspQI	GCTCTTC	1 cut(s)	136
BsrI	ACTGG	1 cut(s)	169
BssECI	CCNNGG	2 cut(s)	16, 120
BssMI	GATC	1 cut(s)	76
BssNAI	GTATAC	1 cut(s)	23
Bst1107I	GTATAC	1 cut(s)	23
Bst2UI	CCWGG	1 cut(s)	17
Bst6I	CTCTTC	2 cut(s)	69, 136
BstDEI	CTNAG	1 cut(s)	135
BstF5I	GGATG	2 cut(s)	46, 57
BstKTI	GATC	1 cut(s)	79
BstMBI	GATC	1 cut(s)	76
BstMWI	GCNNNNNNNGC	1 cut(s)	94
BstNI	CCWGG	1 cut(s)	17
BstSCI	CCNGG	1 cut(s)	15
BstV1I	GCAGC	1 cut(s)	158
BstZ17I	GTATAC	1 cut(s)	23
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	2 cut(s)	46, 57
CviJI	RGCY	1 cut(s)	5
CviKI_1	RGCY	1 cut(s)	5
DdeI	CTNAG	1 cut(s)	135
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	69, 136
EarI	CTCTTC	2 cut(s)	69, 136
EcoRII	CCWGG	1 cut(s)	15
FaiI	YATR	3 cut(s)	23, 29, 104
FalI	AAGNNNNNCTT	2 cut(s)	48, 80
FblI	GTMKAC	1 cut(s)	22
Fnu4HI	GCNGC	2 cut(s)	89, 147
FokI	GGATG	2 cut(s)	53, 64
Fsp4HI	GCNGC	2 cut(s)	89, 147
GluI	GCNGC	2 cut(s)	89, 147
HaeIII	GGCC	1 cut(s)	5
HinfI	GANTC	1 cut(s)	125
Hpy166II	GTNNAC	1 cut(s)	23
Hpy188III	TCNNGA	1 cut(s)	68
Hpy8I	GTNNAC	1 cut(s)	23
HpyF10VI	GCNNNNNNNGC	1 cut(s)	94
HpyF3I	CTNAG	1 cut(s)	135
Kzo9I	GATC	1 cut(s)	76
LguI	GCTCTTC	1 cut(s)	136
LpnPI	CCDG	5 cut(s)	2, 29, 81, 83, 98
Lsp1109I	GCAGC	1 cut(s)	158
LweI	GCATC	1 cut(s)	158
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	1 cut(s)	78
MboI	GATC	1 cut(s)	76
MboII	GAAGA	4 cut(s)	56, 56, 71, 153
MhlI	GDGCHC	1 cut(s)	136
MmeI	TCCRAC	1 cut(s)	153
MnlI	CCTC	1 cut(s)	115
MseI	TTAA	1 cut(s)	11
MspR9I	CCNGG	1 cut(s)	17
MvaI	CCWGG	1 cut(s)	17
MwoI	GCNNNNNNNGC	1 cut(s)	94
NdeII	GATC	1 cut(s)	76
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	1 cut(s)	164
PciSI	GCTCTTC	1 cut(s)	136
PfeI	GAWTC	1 cut(s)	125
PkrI	GCNGC	2 cut(s)	90, 148
PsiI	TTATAA	1 cut(s)	104
Psp6I	CCWGG	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	15
SapI	GCTCTTC	1 cut(s)	136
SaqAI	TTAA	1 cut(s)	11
SatI	GCNGC	2 cut(s)	89, 147
Sau3AI	GATC	1 cut(s)	76
ScrFI	CCNGG	1 cut(s)	17
SduI	GDGCHC	1 cut(s)	136
SetI	ASST	1 cut(s)	18
SfaNI	GCATC	1 cut(s)	158
SgeI	CNNG	8 cut(s)	19, 28, 29, 80, 97, 110, 133, 141
SsiI	CCGC	1 cut(s)	89
StyD4I	CCNGG	1 cut(s)	15
TauI	GCSGC	1 cut(s)	91
TfiI	GAWTC	1 cut(s)	125
Tru1I	TTAA	1 cut(s)	11
Tru9I	TTAA	1 cut(s)	11
TseFI	GTSAC	1 cut(s)	164
TseI	GCWGC	1 cut(s)	146
Tsp45I	GTSAC	1 cut(s)	164
TspDTI	ATGAA	2 cut(s)	57, 68
XmiI	GTMKAC	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.