Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0022181

Physical Location & Seq

Genomic Coordinates Forward (+)

6762070 .. 6762813

Gene Structure 744 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGAAATCAAAGTACCAGGTGGAACCAGGAACTGCACATTTTGCATGTATGGTTGATCTGCTTGGTCGAGCAGGGCAAGTAAAGGAGGCAATGGATTTAATTAATAGGATGCCAGTGGAAGCAGATGCAATTGTTTGGGGTGCCGGATTAGGTGCATGTAGACAGCACATGAAAATGGACTTGGCGGAAGTTGCAGCAAAGAAACTTACAGAGCTTGAGCCTGATAAAGCAGGGCCTTACGTCTTGCTATCAAATATTTATGCATCCCAGGGTAGATGGCATGATGTTGCAGACGTGAGGGAAAACATGAGAGCCAGAAGTCTTCACAAGTCGCCTGGCTGTAGCTGGATTGTGGTGGAGAAAAATGTACACATGTTTACTGGGGGAGAGAGCACGGGACACCCAGAACATGAGATGATCATGAGAGAGTTAGAGAGACTGGGTGTATTATTAAGAGAAGCTGGTTACTGCCCTGATGGGAGCTTTGTATTGCATGATGTAGAAGAAGAAGAGAAGGCACACAGCTTGGGTTATCATAGTGAGAAATTGGCCATAGTATATGGGCTCCTCAAGGTGCCAAAAGGGATGCCAATTCGTGTGATGAAGAACCTTCGGGTTTGTGGGGATTGCCATTCTGCAATTAAATTAATAGCTAAAGTTACGCAGAGAGAGATTGTTTTGAGGGATGCTAACAGATTTCATCATTTTAAGGATGGTGTGTGTTCTTGTGGAGACTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

248

Amino Acids

27.67

Weight (kDa)

6.89

Isoelectric Point (pI)

34.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	56 - 117	9.5e-23	E motif
DYW_deaminase	PF14432	155 - 247	6.3e-44	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022181)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08730
malus_domestica	MD05G1311200.v1.1
pyrus_communis	pycom14g06810
rosa_multiflora	Rmu_sc0025557.1_g000003

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	140, 574
AccI	GTMKAC	1 cut(s)	160
AciI	CCGC	1 cut(s)	185
AcoI	YGGCCR	1 cut(s)	549
AfaI	GTAC	2 cut(s)	14, 369
AflIII	ACRYGT	1 cut(s)	372
AjiI	CACGTC	1 cut(s)	295
AjnI	CCWGG	4 cut(s)	15, 25, 267, 334
AjuI	GAANNNNNNNTTGG	2 cut(s)	164, 196
AluBI	AGCT	6 cut(s)	214, 345, 461, 483, 525, 653
AluI	AGCT	6 cut(s)	214, 345, 461, 483, 525, 653
Alw21I	GWGCWC	1 cut(s)	395
Alw26I	GTCTC	2 cut(s)	430, 726
AlwNI	CAGNNNCTG	1 cut(s)	32
AoxI	GGCC	2 cut(s)	233, 549
ApeKI	GCWGC	1 cut(s)	194
AseI	ATTAAT	2 cut(s)	102, 647
AspS9I	GGNCC	1 cut(s)	233
BalI	TGGCCA	1 cut(s)	551
BanI	GGYRCC	2 cut(s)	140, 574
BanII	GRGCYC	1 cut(s)	567
BbsI	GAAGAC	1 cut(s)	314
Bbv12I	GWGCWC	1 cut(s)	395
BbvI	GCAGC	1 cut(s)	206
BccI	CCATC	3 cut(s)	270, 470, 707
BciT130I	CCWGG	4 cut(s)	17, 27, 269, 336
BclI	TGATCA	1 cut(s)	417
BcoDI	GTCTC	2 cut(s)	430, 726
BfmI	CTRYAG	1 cut(s)	340
BisI	GCNGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	196
Bme1390I	CCNGG	4 cut(s)	17, 27, 269, 336
BmgBI	CACGTC	1 cut(s)	295
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	4 cut(s)	24, 142, 566, 576
BmrFI	CCNGG	4 cut(s)	17, 27, 269, 336
BmrI	ACTGGG	2 cut(s)	390, 449
BmsI	GCATC	5 cut(s)	99, 115, 272, 576, 676
BmuI	ACTGGG	2 cut(s)	390, 449
BpiI	GAAGAC	1 cut(s)	314
BpuEI	CTTGAG	2 cut(s)	236, 554
BsaJI	CCNNGG	2 cut(s)	267, 268
Bse1I	ACTGG	3 cut(s)	113, 385, 444
Bse3DI	GCAATG	1 cut(s)	96
BseBI	CCWGG	4 cut(s)	17, 27, 269, 336
BseDI	CCNNGG	2 cut(s)	267, 268
BseGI	GGATG	5 cut(s)	114, 263, 591, 691, 718
BseMI	GCAATG	1 cut(s)	96
BseNI	ACTGG	3 cut(s)	113, 385, 444
BseRI	GAGGAG	1 cut(s)	557
BseXI	GCAGC	1 cut(s)	206
BsgI	GTGCAG	1 cut(s)	18
BshFI	GGCC	2 cut(s)	235, 551
BshNI	GGYRCC	2 cut(s)	140, 574
BsiHKAI	GWGCWC	1 cut(s)	395
BsiSI	CCGG	1 cut(s)	144
BslFI	GGGAC	1 cut(s)	411
BsmAI	GTCTC	2 cut(s)	430, 726
BsmFI	GGGAC	1 cut(s)	411
BsnI	GGCC	2 cut(s)	235, 551
Bsp1286I	GDGCHC	2 cut(s)	395, 567
Bsp1407I	TGTACA	1 cut(s)	367
Bsp143I	GATC	2 cut(s)	55, 417
BspACI	CCGC	1 cut(s)	185
BspANI	GGCC	2 cut(s)	235, 551
BspHI	TCATGA	1 cut(s)	420
BspLI	GGNNCC	4 cut(s)	24, 142, 566, 576
BspT107I	GGYRCC	2 cut(s)	140, 574
BsrDI	GCAATG	1 cut(s)	96
BsrGI	TGTACA	1 cut(s)	367
BsrI	ACTGG	3 cut(s)	113, 385, 444
BssECI	CCNNGG	2 cut(s)	267, 268
BssMI	GATC	2 cut(s)	55, 417
Bst2UI	CCWGG	4 cut(s)	17, 27, 269, 336
Bst6I	CTCTTC	1 cut(s)	504
BstAPI	GCANNNNNTGC	1 cut(s)	41
BstAUI	TGTACA	1 cut(s)	367
BstF5I	GGATG	5 cut(s)	114, 263, 591, 691, 718
BstKTI	GATC	2 cut(s)	58, 420
BstMAI	GTCTC	2 cut(s)	430, 726
BstMBI	GATC	2 cut(s)	55, 417
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 191
BstNI	CCWGG	4 cut(s)	17, 27, 269, 336
BstNSI	RCATGY	3 cut(s)	48, 159, 376
BstSCI	CCNGG	4 cut(s)	15, 25, 267, 334
BstSFI	CTRYAG	1 cut(s)	340
BstV1I	GCAGC	1 cut(s)	206
BstV2I	GAAGAC	1 cut(s)	314
BsuRI	GGCC	2 cut(s)	235, 551
BtrI	CACGTC	1 cut(s)	295
BtsCI	GGATG	5 cut(s)	114, 263, 591, 691, 718
BtsIMutI	CAGTG	1 cut(s)	120
CaiI	CAGNNNCTG	1 cut(s)	32
CciI	TCATGA	1 cut(s)	420
Cfr13I	GGNCC	1 cut(s)	233
CsiI	ACCWGGT	1 cut(s)	15
Csp6I	GTAC	2 cut(s)	13, 368
CviAII	CATG	9 cut(s)	45, 156, 169, 281, 307, 373, 410, 421, 494
CviQI	GTAC	2 cut(s)	13, 368
DpnI	GATC	2 cut(s)	57, 419
DpnII	GATC	2 cut(s)	55, 417
EaeI	YGGCCR	1 cut(s)	549
Eam1104I	CTCTTC	1 cut(s)	504
EarI	CTCTTC	1 cut(s)	504
EciI	GGCGGA	1 cut(s)	200
Eco24I	GRGCYC	1 cut(s)	567
EcoO109I	RGGNCCY	1 cut(s)	233
EcoRII	CCWGG	4 cut(s)	15, 25, 267, 334
EcoT22I	ATGCAT	1 cut(s)	265
EcoT38I	GRGCYC	1 cut(s)	567
FaeI	CATG	9 cut(s)	48, 159, 172, 284, 310, 376, 413, 424, 497
FaqI	GGGAC	1 cut(s)	411
FatI	CATG	9 cut(s)	44, 155, 168, 280, 306, 372, 409, 420, 493
FbaI	TGATCA	1 cut(s)	417
FblI	GTMKAC	1 cut(s)	160
Fnu4HI	GCNGC	1 cut(s)	195
FokI	GGATG	5 cut(s)	121, 250, 598, 698, 725
FriOI	GRGCYC	1 cut(s)	567
Fsp4HI	GCNGC	1 cut(s)	195
GluI	GCNGC	1 cut(s)	195
HaeIII	GGCC	2 cut(s)	235, 551
HapII	CCGG	1 cut(s)	144
Hin1II	CATG	9 cut(s)	48, 159, 172, 284, 310, 376, 413, 424, 497
HpaII	CCGG	1 cut(s)	144
Hpy166II	GTNNAC	3 cut(s)	161, 370, 378
Hpy188III	TCNNGA	1 cut(s)	421
Hpy8I	GTNNAC	3 cut(s)	161, 370, 378
HpyAV	CCTTC	2 cut(s)	508, 620
HpyCH4IV	ACGT	2 cut(s)	240, 294
HpyCH4V	TGCA	9 cut(s)	35, 44, 128, 155, 194, 263, 290, 493, 638
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 191
HpySE526I	ACGT	2 cut(s)	240, 294
Hsp92II	CATG	9 cut(s)	48, 159, 172, 284, 310, 376, 413, 424, 497
Ksp22I	TGATCA	1 cut(s)	417
Kzo9I	GATC	2 cut(s)	55, 417
LmnI	GCTCC	2 cut(s)	480, 570
Lsp1109I	GCAGC	1 cut(s)	206
LweI	GCATC	5 cut(s)	99, 115, 272, 576, 676
MabI	ACCWGGT	1 cut(s)	15
MaeII	ACGT	2 cut(s)	240, 294
MaeIII	GTNAC	2 cut(s)	464, 658
MalI	GATC	2 cut(s)	57, 419
MboI	GATC	2 cut(s)	55, 417
MboII	GAAGA	5 cut(s)	314, 515, 518, 521, 616
MfeI	CAATTG	1 cut(s)	129
MhlI	GDGCHC	2 cut(s)	395, 567
MlsI	TGGCCA	1 cut(s)	551
MluCI	AATT	6 cut(s)	99, 129, 545, 591, 639, 644
MluNI	TGGCCA	1 cut(s)	551
MnlI	CCTC	4 cut(s)	79, 291, 578, 675
Mox20I	TGGCCA	1 cut(s)	551
Mph1103I	ATGCAT	1 cut(s)	265
MscI	TGGCCA	1 cut(s)	551
MseI	TTAA	6 cut(s)	98, 102, 452, 642, 647, 708
MslI	CAYNNNNRTG	1 cut(s)	173
Msp20I	TGGCCA	1 cut(s)	551
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	4 cut(s)	17, 27, 269, 336
MunI	CAATTG	1 cut(s)	129
MvaI	CCWGG	4 cut(s)	17, 27, 269, 336
MwoI	GCNNNNNNNGC	2 cut(s)	41, 191
NdeII	GATC	2 cut(s)	55, 417
NlaIII	CATG	9 cut(s)	48, 159, 172, 284, 310, 376, 413, 424, 497
NlaIV	GGNNCC	4 cut(s)	24, 142, 566, 576
NsiI	ATGCAT	1 cut(s)	265
NspI	RCATGY	3 cut(s)	48, 159, 376
PacI	TTAATTAA	1 cut(s)	102
PagI	TCATGA	1 cut(s)	420
PasI	CCCWGGG	1 cut(s)	268
PciI	ACATGT	1 cut(s)	372
PkrI	GCNGC	1 cut(s)	196
PscI	ACATGT	1 cut(s)	372
PshBI	ATTAAT	2 cut(s)	102, 647
Psp6I	CCWGG	4 cut(s)	15, 25, 267, 334
PspGI	CCWGG	4 cut(s)	15, 25, 267, 334
PspN4I	GGNNCC	4 cut(s)	24, 142, 566, 576
PspPI	GGNCC	1 cut(s)	233
PstNI	CAGNNNCTG	1 cut(s)	32
RsaI	GTAC	2 cut(s)	14, 369
RsaNI	GTAC	2 cut(s)	13, 368
RseI	CAYNNNNRTG	1 cut(s)	173
SaqAI	TTAA	6 cut(s)	98, 102, 452, 642, 647, 708
SatI	GCNGC	1 cut(s)	195
Sau3AI	GATC	2 cut(s)	55, 417
Sau96I	GGNCC	1 cut(s)	233
ScrFI	CCNGG	4 cut(s)	17, 27, 269, 336
SduI	GDGCHC	2 cut(s)	395, 567
SexAI	ACCWGGT	1 cut(s)	15
SfaNI	GCATC	5 cut(s)	99, 115, 272, 576, 676
SfcI	CTRYAG	1 cut(s)	340
SmiMI	CAYNNNNRTG	1 cut(s)	173
SmlI	CTYRAG	2 cut(s)	215, 569
SmoI	CTYRAG	2 cut(s)	215, 569
Sse9I	AATT	6 cut(s)	99, 129, 545, 591, 639, 644
SsiI	CCGC	1 cut(s)	185
SspI	AATATT	1 cut(s)	256
StyD4I	CCNGG	4 cut(s)	15, 25, 267, 334
TaiI	ACGT	2 cut(s)	243, 297
TaqI	TCGA	1 cut(s)	67
TasI	AATT	6 cut(s)	99, 129, 545, 591, 639, 644
TatI	WGTACW	1 cut(s)	367
Tru1I	TTAA	6 cut(s)	98, 102, 452, 642, 647, 708
Tru9I	TTAA	6 cut(s)	98, 102, 452, 642, 647, 708
TscAI	CASTG	1 cut(s)	120
TseI	GCWGC	1 cut(s)	194
TspDTI	ATGAA	4 cut(s)	17, 185, 617, 689
TspRI	CASTG	1 cut(s)	120
VspI	ATTAAT	2 cut(s)	102, 647
XceI	RCATGY	3 cut(s)	48, 159, 376
XmiI	GTMKAC	1 cut(s)	160
Zsp2I	ATGCAT	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.