Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0020358

Physical Location & Seq

Genomic Coordinates Reverse (-)

18881311 .. 18881947

Gene Structure 637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGTGTTTACAGAACACCGAGATGTTGCTTAAAACTCTTGGAAGACAGGACGTATCCTTTCGCTTCGTGGAAAACCTTGTGGAGTTGGAAAAAATCAGAGAGGCAAGCAAGGCGCTTGTTAAGGAGGACGACAGGGATGTGAAGGAGAAGAAGCCGGGAATTCAGAAGCGGGATGTGAAGAGGAAGAGGCCTGCTGAGAAGAAGCAAGAACTTCAGAAGAAGGATGGGAGAGAGGAAGCTTGCTCCTCTAGACCTGCTTTGCGGCTTTGTGGTGATGAAATAGTCCGAGCCAGAGAGGAGGCACACAAGAACACAACATTTGACAAGTTCAGTCGTAACAATCCCAGTAAACCAGTTCGTGCATGCAAAGATTGCAAAAGAAGCTGGGTTGCACGCGGGAACTTGGGAATGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008746 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0010033 GO:0010154 GO:0010319 GO:0016020 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0016651 GO:0016652 GO:0022414 GO:0030060 GO:0031090 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055114 GO:0061458 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00020 ko00270 ko00620 ko00630 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00270 map00620 map00630 map00710 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

Ldh_1_C Ldh_1_N

Protein Analysis

139

Amino Acids

15.96

Weight (kDa)

9.74

Isoelectric Point (pI)

58.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020358)

Species	Orthologous Gene IDs
malus_domestica	MD05G1023800.v1.1 MD06G1194100.v1.1 MD14G1201300.v1.1 MD14G1201400.v1.1
pyrus_communis	pycom06g17210 pycom14g16680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	262
AccII	CGCG	1 cut(s)	396
AciI	CCGC	3 cut(s)	169, 262, 396
AcsI	RAATTY	1 cut(s)	159
AcuI	CTGAAG	1 cut(s)	197
AluBI	AGCT	2 cut(s)	239, 384
AluI	AGCT	2 cut(s)	239, 384
AoxI	GGCC	1 cut(s)	188
ApoI	RAATTY	1 cut(s)	159
AspLEI	GCGC	1 cut(s)	115
AsuC2I	CCSGG	1 cut(s)	156
AsuHPI	GGTGA	1 cut(s)	284
BbsI	GAAGAC	1 cut(s)	49
BccI	CCATC	1 cut(s)	218
BciVI	GTATCC	1 cut(s)	64
BcnI	CCSGG	1 cut(s)	156
BfaI	CTAG	2 cut(s)	249, 415
BfoI	RGCGCY	1 cut(s)	116
BfuAI	ACCTGC	1 cut(s)	262
BfuI	GTATCC	1 cut(s)	64
BisI	GCNGC	1 cut(s)	263
BlsI	GCNGC	1 cut(s)	264
Bme1390I	CCNGG	1 cut(s)	156
BmrFI	CCNGG	1 cut(s)	156
BmrI	ACTGGG	1 cut(s)	339
BmuI	ACTGGG	1 cut(s)	339
BpiI	GAAGAC	1 cut(s)	49
BpuMI	CCSGG	1 cut(s)	156
Bse1I	ACTGG	2 cut(s)	345, 353
BseGI	GGATG	3 cut(s)	142, 178, 229
BseMII	CTCAG	1 cut(s)	186
BseNI	ACTGG	2 cut(s)	345, 353
BseRI	GAGGAG	2 cut(s)	235, 311
BseYI	CCCAGC	1 cut(s)	384
Bsh1236I	CGCG	1 cut(s)	396
BshFI	GGCC	1 cut(s)	190
BsiSI	CCGG	1 cut(s)	155
BsnI	GGCC	1 cut(s)	190
BspACI	CCGC	3 cut(s)	169, 262, 396
BspANI	GGCC	1 cut(s)	190
BspCNI	CTCAG	1 cut(s)	187
BspFNI	CGCG	1 cut(s)	396
BspMI	ACCTGC	1 cut(s)	262
BsrI	ACTGG	2 cut(s)	345, 353
Bst6I	CTCTTC	2 cut(s)	173, 179
BstAPI	GCANNNNNTGC	1 cut(s)	372
BstC8I	GCNNGC	5 cut(s)	106, 192, 241, 364, 394
BstDEI	CTNAG	1 cut(s)	195
BstF5I	GGATG	3 cut(s)	142, 178, 229
BstFNI	CGCG	1 cut(s)	396
BstH2I	RGCGCY	1 cut(s)	116
BstHHI	GCGC	1 cut(s)	115
BstMWI	GCNNNNNNNGC	3 cut(s)	110, 372, 381
BstNSI	RCATGY	1 cut(s)	366
BstSCI	CCNGG	1 cut(s)	154
BstUI	CGCG	1 cut(s)	396
BstV2I	GAAGAC	1 cut(s)	49
BsuI	GTATCC	1 cut(s)	64
BsuRI	GGCC	1 cut(s)	190
BtsCI	GGATG	3 cut(s)	142, 178, 229
BveI	ACCTGC	1 cut(s)	262
Cac8I	GCNNGC	5 cut(s)	106, 192, 241, 364, 394
CfoI	GCGC	1 cut(s)	115
CviAII	CATG	1 cut(s)	363
CviJI	RGCY	7 cut(s)	154, 190, 239, 265, 290, 384, 414
CviKI_1	RGCY	7 cut(s)	154, 190, 239, 265, 290, 384, 414
DdeI	CTNAG	1 cut(s)	195
Eam1104I	CTCTTC	2 cut(s)	173, 179
EarI	CTCTTC	2 cut(s)	173, 179
Eco147I	AGGCCT	1 cut(s)	190
Eco57I	CTGAAG	1 cut(s)	197
EcoRI	GAATTC	1 cut(s)	159
FaeI	CATG	1 cut(s)	366
FaiI	YATR	1 cut(s)	364
FatI	CATG	1 cut(s)	362
FauI	CCCGC	2 cut(s)	162, 389
Fnu4HI	GCNGC	1 cut(s)	263
FokI	GGATG	3 cut(s)	149, 185, 236
Fsp4HI	GCNGC	1 cut(s)	263
FspBI	CTAG	2 cut(s)	249, 415
GlaI	GCGC	1 cut(s)	114
GluI	GCNGC	1 cut(s)	263
GsaI	CCCAGC	1 cut(s)	388
HaeII	RGCGCY	1 cut(s)	116
HaeIII	GGCC	1 cut(s)	190
HapII	CCGG	1 cut(s)	155
HhaI	GCGC	1 cut(s)	115
Hin1II	CATG	1 cut(s)	366
Hin6I	GCGC	1 cut(s)	113
HinP1I	GCGC	1 cut(s)	113
HindIII	AAGCTT	1 cut(s)	237
HpaII	CCGG	1 cut(s)	155
HphI	GGTGA	1 cut(s)	284
Hpy166II	GTNNAC	2 cut(s)	8, 350
Hpy188I	TCNGA	4 cut(s)	98, 165, 216, 287
Hpy188III	TCNNGA	1 cut(s)	249
Hpy8I	GTNNAC	2 cut(s)	8, 350
HpyAV	CCTTC	2 cut(s)	136, 214
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	4 cut(s)	362, 366, 375, 392
HpyF10VI	GCNNNNNNNGC	3 cut(s)	110, 372, 381
HpyF3I	CTNAG	1 cut(s)	195
HpySE526I	ACGT	1 cut(s)	51
Hsp92II	CATG	1 cut(s)	366
HspAI	GCGC	1 cut(s)	113
LmnI	GCTCC	1 cut(s)	248
LpnPI	CCDG	9 cut(s)	32, 118, 168, 204, 267, 304, 358, 366, 370
MaeI	CTAG	2 cut(s)	249, 415
MaeII	ACGT	1 cut(s)	51
MaeIII	GTNAC	1 cut(s)	335
MboII	GAAGA	6 cut(s)	54, 160, 190, 196, 211, 229
MluCI	AATT	1 cut(s)	159
MmeI	TCCRAC	1 cut(s)	66
MnlI	CCTC	8 cut(s)	94, 118, 174, 180, 226, 256, 289, 292
MseI	TTAA	2 cut(s)	30, 120
MslI	CAYNNNNRTG	1 cut(s)	20
MspI	CCGG	1 cut(s)	155
MspR9I	CCNGG	1 cut(s)	156
MvnI	CGCG	1 cut(s)	396
MwoI	GCNNNNNNNGC	3 cut(s)	110, 372, 381
NciI	CCSGG	1 cut(s)	156
NlaIII	CATG	1 cut(s)	366
NspI	RCATGY	1 cut(s)	366
PaeI	GCATGC	1 cut(s)	366
PceI	AGGCCT	1 cut(s)	190
PkrI	GCNGC	1 cut(s)	264
PspFI	CCCAGC	1 cut(s)	384
RseI	CAYNNNNRTG	1 cut(s)	20
SaqAI	TTAA	2 cut(s)	30, 120
SatI	GCNGC	1 cut(s)	263
ScrFI	CCNGG	1 cut(s)	156
SetI	ASST	5 cut(s)	54, 78, 241, 256, 386
SmiMI	CAYNNNNRTG	1 cut(s)	20
SphI	GCATGC	1 cut(s)	366
Sse9I	AATT	1 cut(s)	159
SseBI	AGGCCT	1 cut(s)	190
SsiI	CCGC	3 cut(s)	169, 262, 396
SspMI	CTAG	2 cut(s)	249, 415
StuI	AGGCCT	1 cut(s)	190
StyD4I	CCNGG	1 cut(s)	154
TaiI	ACGT	1 cut(s)	54
TasI	AATT	1 cut(s)	159
TauI	GCSGC	1 cut(s)	265
Tru1I	TTAA	2 cut(s)	30, 120
Tru9I	TTAA	2 cut(s)	30, 120
TspDTI	ATGAA	1 cut(s)	291
XapI	RAATTY	1 cut(s)	159
XbaI	TCTAGA	1 cut(s)	248
XceI	RCATGY	1 cut(s)	366
XspI	CTAG	2 cut(s)	249, 415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.