Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0020434

Physical Location & Seq

Genomic Coordinates Reverse (-)

20762240 .. 20764579

Gene Structure 2340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGAATTTTTTCAATTTACCAAAACTGCCCCCTCCTTTCTCCTTTCTCCTTCTCCCGATCCTACACTCTCCACTCTCTCCTTCTCTGTTGCAAAAAACTCCCGCCGCTGCACTCTACACCCCTCTTCCCTCCCGCCGCTGCACCTCTTCCTCCTCCTCCTTTTCGTTTCTCTCCGTCACTCTCAACGGTTTGGCTGCTATTTTCTTTTGCTGCGTTGCAATTCTTCTTATCCCAGATTTTGTTTCTCGTAAAATTTCATACCCTTATTTTGGTTTTTCCATTTTTTCGATTTTGCCCTTTTCTCGCCTGTGTTCTCCTCTTCGTTTCCCTGTTCTCCTCTTCCTTCTTCTTCTCCTCCCATTTGTCGATTCGACTAGTTATCGTTGTTCACCGTCTATGGATAAATCTGTAATATTGTTGTATATCGCTTCCTTGGCAGCTTCGTTTCGATTAGTTTCTTCTTCTGCTCTCTGCCCTCACGAGTCCGATTTCTTCCGTTACAGCCTTCAATCTCAATGCCCCATCTCGATCTCCCCCCACCCACCCCTCAAGATCATCGCATCAGGTCCTTTTACCACAACAGACAACTTATTGTTTGAGCCTCTGAAAGAGCTTCTAGCATATGCAAGCAAAAAGCTGCCTCAGTTGCTTATATTGCTAGGACCATTTATTGATTCTGAACATCCAGAAATTAAGAAAGGAACAGTCGACAGGAGCTTTGATGAAATATTCCAAACTGAGATTCTTAGAAAGGTATGTTCTCCAAGCGTTGTCTTTTATCCTCTGTATCCACCAGCAGAAGACACTCCATTGGATTTTTCGCTTGCTCCCGAAGCTCTAAACATCTCATTGATCCCAGATATTCTCATCTTACCCTCTGACATGAAGTATTTTGTGAAGGTACTGAACCTAGGCGAAAGAGGTGAAGAGAAAGATCAGGTTAAATGCATTTGTGTCAATCCGGGAAGACTTGCCAAGGGAGAAGGAGGAGGTACTTTCGTCGAGCTTGAGTACTACGGTAATCCTGACACAACGAATGCTTTGATTGTAAGCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000228 GO:0000278 GO:0000428 GO:0000723 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005658 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0019725 GO:0022402 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032200 GO:0032201 GO:0032991 GO:0032993 GO:0033260 GO:0034641 GO:0034645 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0044770 GO:0044772 GO:0044786 GO:0044843 GO:0046483 GO:0046982 GO:0046983 GO:0051276 GO:0055029 GO:0060249 GO:0061695 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901576 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_pol_E_B Pol_alpha_B_N

Protein Analysis

353

Amino Acids

38.96

Weight (kDa)

6.44

Isoelectric Point (pI)

52.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol_E_B	PF04042	185 - 251	9.5e-13	DNA polymerase alpha/epsilon subunit B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020434)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g10010 pycom10g05180 pycom10g05320 pycom13g27440 pycom14g19450 pycom15g35990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	708
AciI	CCGC	4 cut(s)	102, 105, 133, 136
AclWI	GGATC	2 cut(s)	52, 847
AcsI	RAATTY	2 cut(s)	4, 252
AfaI	GTAC	3 cut(s)	903, 994, 1013
AfiI	CCNNNNNNNGG	1 cut(s)	269
AgsI	TTSAA	2 cut(s)	13, 509
AhlI	ACTAGT	1 cut(s)	374
AjuI	GAANNNNNNNTTGG	2 cut(s)	726, 758
AluBI	AGCT	6 cut(s)	440, 613, 637, 717, 836, 1006
AluI	AGCT	6 cut(s)	440, 613, 637, 717, 836, 1006
AlwI	GGATC	2 cut(s)	52, 847
ApeKI	GCWGC	6 cut(s)	107, 138, 194, 210, 437, 637
ApoI	RAATTY	2 cut(s)	4, 252
ArsI	GACNNNNNNTTYG	2 cut(s)	701, 733
Asp700I	GAANNNNTTC	1 cut(s)	8
AspA2I	CCTAGG	1 cut(s)	910
AspS9I	GGNCC	2 cut(s)	566, 662
AsuC2I	CCSGG	1 cut(s)	963
AsuHPI	GGTGA	2 cut(s)	381, 935
AvaII	GGWCC	2 cut(s)	566, 662
AvrII	CCTAGG	1 cut(s)	910
BaeI	ACNNNNGTAYC	2 cut(s)	984, 1017
BauI	CACGAG	1 cut(s)	479
BbsI	GAAGAC	2 cut(s)	807, 973
BbvI	GCAGC	6 cut(s)	94, 125, 181, 197, 449, 624
BccI	CCATC	1 cut(s)	530
BciVI	GTATCC	1 cut(s)	798
BcnI	CCSGG	1 cut(s)	963
BcuI	ACTAGT	1 cut(s)	374
BfaI	CTAG	4 cut(s)	375, 617, 659, 911
BfuI	GTATCC	1 cut(s)	798
BisI	GCNGC	8 cut(s)	105, 108, 136, 139, 195, 211, 438, 638
BlnI	CCTAGG	1 cut(s)	910
BlsI	GCNGC	8 cut(s)	106, 109, 137, 140, 196, 212, 439, 639
BmcAI	AGTACT	1 cut(s)	1013
Bme1390I	CCNGG	1 cut(s)	963
Bme18I	GGWCC	2 cut(s)	566, 662
BmgT120I	GGNCC	2 cut(s)	566, 662
BmrFI	CCNGG	1 cut(s)	963
BmsI	GCATC	1 cut(s)	569
BpiI	GAAGAC	2 cut(s)	807, 973
BpuEI	CTTGAG	2 cut(s)	533, 1028
BpuMI	CCSGG	1 cut(s)	963
BsaJI	CCNNGG	3 cut(s)	432, 910, 975
Bsc4I	CCNNNNNNNGG	1 cut(s)	269
BseDI	CCNNGG	3 cut(s)	432, 910, 975
BseGI	GGATG	1 cut(s)	682
BseLI	CCNNNNNNNGG	1 cut(s)	269
BseMII	CTCAG	2 cut(s)	656, 729
BseRI	GAGGAG	6 cut(s)	142, 145, 306, 326, 344, 1002
BseXI	GCAGC	6 cut(s)	94, 125, 181, 197, 449, 624
BsgI	GTGCAG	2 cut(s)	93, 124
BsiSI	CCGG	1 cut(s)	962
BslI	CCNNNNNNNGG	1 cut(s)	269
BsmI	GAATGC	1 cut(s)	1042
Bsp143I	GATC	5 cut(s)	57, 528, 552, 852, 934
BspACI	CCGC	4 cut(s)	102, 105, 133, 136
BspCNI	CTCAG	2 cut(s)	655, 730
BspPI	GGATC	2 cut(s)	52, 847
BssECI	CCNNGG	3 cut(s)	432, 910, 975
BssMI	GATC	5 cut(s)	57, 528, 552, 852, 934
BssSI	CACGAG	1 cut(s)	479
BssT1I	CCWWGG	3 cut(s)	432, 910, 975
Bst2BI	CACGAG	1 cut(s)	479
Bst4CI	ACNGT	4 cut(s)	188, 393, 706, 1019
Bst6I	CTCTTC	5 cut(s)	129, 151, 324, 344, 921
BstC8I	GCNNGC	2 cut(s)	628, 825
BstDEI	CTNAG	3 cut(s)	642, 738, 746
BstF5I	GGATG	1 cut(s)	682
BstKTI	GATC	5 cut(s)	60, 531, 555, 855, 937
BstMBI	GATC	5 cut(s)	57, 528, 552, 852, 934
BstMWI	GCNNNNNNNGC	4 cut(s)	434, 646, 655, 833
BstSCI	CCNGG	1 cut(s)	961
BstV1I	GCAGC	6 cut(s)	94, 125, 181, 197, 449, 624
BstV2I	GAAGAC	2 cut(s)	807, 973
BsuI	GTATCC	1 cut(s)	798
BtgZI	GCGATG	1 cut(s)	541
BtsCI	GGATG	1 cut(s)	682
Cac8I	GCNNGC	2 cut(s)	628, 825
Cfr13I	GGNCC	2 cut(s)	566, 662
Csp6I	GTAC	3 cut(s)	902, 993, 1012
CviAII	CATG	1 cut(s)	883
CviJI	RGCY	9 cut(s)	194, 440, 504, 601, 613, 637, 717, 836, 1006
CviKI_1	RGCY	9 cut(s)	194, 440, 504, 601, 613, 637, 717, 836, 1006
CviQI	GTAC	3 cut(s)	902, 993, 1012
DdeI	CTNAG	3 cut(s)	642, 738, 746
DpnI	GATC	5 cut(s)	59, 530, 554, 854, 936
DpnII	GATC	5 cut(s)	57, 528, 552, 852, 934
Eam1104I	CTCTTC	5 cut(s)	129, 151, 324, 344, 921
EarI	CTCTTC	5 cut(s)	129, 151, 324, 344, 921
Eco130I	CCWWGG	3 cut(s)	432, 910, 975
Eco47I	GGWCC	2 cut(s)	566, 662
EcoO109I	RGGNCCY	1 cut(s)	566
EcoT14I	CCWWGG	3 cut(s)	432, 910, 975
EcoT22I	ATGCAT	1 cut(s)	950
ErhI	CCWWGG	3 cut(s)	432, 910, 975
FaeI	CATG	1 cut(s)	886
FatI	CATG	1 cut(s)	882
FauI	CCCGC	2 cut(s)	109, 140
FauNDI	CATATG	1 cut(s)	622
FblI	GTMKAC	1 cut(s)	708
Fnu4HI	GCNGC	8 cut(s)	105, 108, 136, 139, 195, 211, 438, 638
FokI	GGATG	1 cut(s)	669
Fsp4HI	GCNGC	8 cut(s)	105, 108, 136, 139, 195, 211, 438, 638
FspBI	CTAG	4 cut(s)	375, 617, 659, 911
GluI	GCNGC	8 cut(s)	105, 108, 136, 139, 195, 211, 438, 638
HapII	CCGG	1 cut(s)	962
Hin1II	CATG	1 cut(s)	886
HincII	GTYRAC	1 cut(s)	709
HindII	GTYRAC	1 cut(s)	709
HinfI	GANTC	4 cut(s)	368, 482, 674, 742
HpaII	CCGG	1 cut(s)	962
HphI	GGTGA	2 cut(s)	381, 935
Hpy166II	GTNNAC	2 cut(s)	389, 709
Hpy188I	TCNGA	4 cut(s)	487, 606, 679, 880
Hpy188III	TCNNGA	7 cut(s)	55, 479, 526, 550, 686, 830, 1025
Hpy8I	GTNNAC	2 cut(s)	389, 709
Hpy99I	CGWCG	1 cut(s)	1004
HpyAV	CCTTC	6 cut(s)	59, 90, 353, 515, 892, 977
HpyCH4III	ACNGT	4 cut(s)	188, 393, 706, 1019
HpyCH4V	TGCA	6 cut(s)	91, 110, 141, 218, 626, 948
HpyF10VI	GCNNNNNNNGC	4 cut(s)	434, 646, 655, 833
HpyF3I	CTNAG	3 cut(s)	642, 738, 746
Hsp92II	CATG	1 cut(s)	886
Kzo9I	GATC	5 cut(s)	57, 528, 552, 852, 934
LmnI	GCTCC	2 cut(s)	714, 832
Lsp1109I	GCAGC	6 cut(s)	94, 125, 181, 197, 449, 624
LweI	GCATC	1 cut(s)	569
MaeI	CTAG	4 cut(s)	375, 617, 659, 911
MaeIII	GTNAC	2 cut(s)	175, 497
MalI	GATC	5 cut(s)	59, 530, 554, 854, 936
MboI	GATC	5 cut(s)	57, 528, 552, 852, 934
MluCI	AATT	5 cut(s)	4, 13, 219, 252, 690
MlyI	GAGTC	1 cut(s)	491
Mph1103I	ATGCAT	1 cut(s)	950
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	2 cut(s)	693, 942
MspA1I	CMGCKG	2 cut(s)	107, 138
MspI	CCGG	1 cut(s)	962
MspR9I	CCNGG	1 cut(s)	963
Mva1269I	GAATGC	1 cut(s)	1042
MwoI	GCNNNNNNNGC	4 cut(s)	434, 646, 655, 833
NciI	CCSGG	1 cut(s)	963
NdeI	CATATG	1 cut(s)	622
NdeII	GATC	5 cut(s)	57, 528, 552, 852, 934
NlaIII	CATG	1 cut(s)	886
NmuCI	GTSAC	1 cut(s)	175
NsiI	ATGCAT	1 cut(s)	950
PctI	GAATGC	1 cut(s)	1042
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	3 cut(s)	368, 674, 742
PfoI	TCCNGGA	1 cut(s)	961
PkrI	GCNGC	8 cut(s)	106, 109, 137, 140, 196, 212, 439, 639
PleI	GAGTC	1 cut(s)	490
PpsI	GAGTC	1 cut(s)	490
PpuMI	RGGWCCY	1 cut(s)	566
Psp5II	RGGWCCY	1 cut(s)	566
PspPI	GGNCC	2 cut(s)	566, 662
PspPPI	RGGWCCY	1 cut(s)	566
RsaI	GTAC	3 cut(s)	903, 994, 1013
RsaNI	GTAC	3 cut(s)	902, 993, 1012
SalI	GTCGAC	1 cut(s)	707
SaqAI	TTAA	2 cut(s)	693, 942
SatI	GCNGC	8 cut(s)	105, 108, 136, 139, 195, 211, 438, 638
Sau3AI	GATC	5 cut(s)	57, 528, 552, 852, 934
Sau96I	GGNCC	2 cut(s)	566, 662
ScaI	AGTACT	1 cut(s)	1013
SchI	GAGTC	1 cut(s)	491
ScrFI	CCNGG	1 cut(s)	963
SfaNI	GCATC	1 cut(s)	569
SinI	GGWCC	2 cut(s)	566, 662
SmlI	CTYRAG	2 cut(s)	548, 1007
SmoI	CTYRAG	2 cut(s)	548, 1007
SpeI	ACTAGT	1 cut(s)	374
Sse9I	AATT	5 cut(s)	4, 13, 219, 252, 690
SsiI	CCGC	4 cut(s)	102, 105, 133, 136
SspI	AATATT	2 cut(s)	414, 729
SspMI	CTAG	4 cut(s)	375, 617, 659, 911
StyD4I	CCNGG	1 cut(s)	961
StyI	CCWWGG	3 cut(s)	432, 910, 975
TaaI	ACNGT	4 cut(s)	188, 393, 706, 1019
TaqI	TCGA	7 cut(s)	287, 366, 371, 448, 527, 708, 1002
TasI	AATT	5 cut(s)	4, 13, 219, 252, 690
TatI	WGTACW	1 cut(s)	1011
TauI	GCSGC	2 cut(s)	107, 138
TfiI	GAWTC	3 cut(s)	368, 674, 742
Tru1I	TTAA	2 cut(s)	693, 942
Tru9I	TTAA	2 cut(s)	693, 942
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	6 cut(s)	107, 138, 194, 210, 437, 637
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	4 cut(s)	17, 246, 738, 899
TspGWI	ACGGA	2 cut(s)	163, 485
VpaK11BI	GGWCC	2 cut(s)	566, 662
XapI	RAATTY	2 cut(s)	4, 252
XmaJI	CCTAGG	1 cut(s)	910
XmiI	GTMKAC	1 cut(s)	708
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	4 cut(s)	375, 617, 659, 911
ZrmI	AGTACT	1 cut(s)	1013
Zsp2I	ATGCAT	1 cut(s)	950

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.