Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0024697

Physical Location & Seq

Genomic Coordinates Forward (+)

617122 .. 617884

Gene Structure 763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g01150.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGAAATTTCTGAAAGTAAGCCCCAAATCGAATTATCTGAAAACCCTAGAGCCACCTGGGACGGTTGCTCCGTCTTGCTCGACATCAACGACGGCGACCGTCTGGTTTTCGCCCGCCTCTCCGCCGGAGCGAAAGTGAAAATTGGGAATAAGAATTGCTCTCTGCAGCCCTTGATTGGCTGCCCCTTTGGCTCTTTCTTTCGGGTCGAAAACGGAGCTGAAGGCCCGTATTTGGCCCGCTACACTCCGTCCACGGAAGGTAATAATGTTCCAGAAAAAGGAAAAATTCAATCAGTAGATGAGTTTAGAGATAATCGAGTATTAGTCGATAACAATAAGGCGCAGAGCCTAACCGGTGAAGACATTAACGCAATGCGACAACAGGGTGCAACGGGCGATGAAATAGTTGAAGCTCTCATTGCAAACAGTGCGACGTTTGAGAAGAAAACTGTTTTCTCACAGGTAATTGAGATCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0030488 GO:0031515 GO:0032259 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0034708 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043527 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gcd10p

Protein Analysis

160

Amino Acids

17.37

Weight (kDa)

4.77

Isoelectric Point (pI)

33.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0024697)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g01150
rosa_multiflora	Rmu_sc0018658.1_g000001 Rmu_sc0018659.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	115, 123, 238
AcsI	RAATTY	2 cut(s)	6, 285
AcuI	CTGAAG	1 cut(s)	240
AfiI	CCNNNNNNNGG	3 cut(s)	176, 232, 278
AgeI	ACCGGT	1 cut(s)	353
AgsI	TTSAA	2 cut(s)	290, 410
AjnI	CCWGG	1 cut(s)	56
AluBI	AGCT	2 cut(s)	218, 413
AluI	AGCT	2 cut(s)	218, 413
AoxI	GGCC	2 cut(s)	223, 234
ApeKI	GCWGC	2 cut(s)	166, 180
ApoI	RAATTY	2 cut(s)	6, 285
AsiGI	ACCGGT	1 cut(s)	353
AspLEI	GCGC	1 cut(s)	343
AspS9I	GGNCC	2 cut(s)	224, 235
AsuHPI	GGTGA	1 cut(s)	368
BbsI	GAAGAC	1 cut(s)	366
BbvI	GCAGC	2 cut(s)	167, 178
BceAI	ACGGC	1 cut(s)	109
BciT130I	CCWGG	1 cut(s)	58
BfaI	CTAG	1 cut(s)	48
BfmI	CTRYAG	1 cut(s)	164
BglI	GCCNNNNNGGC	1 cut(s)	189
BisI	GCNGC	2 cut(s)	167, 181
BlsI	GCNGC	2 cut(s)	168, 182
Bme1390I	CCNGG	1 cut(s)	58
BmgT120I	GGNCC	2 cut(s)	224, 235
BmrFI	CCNGG	1 cut(s)	58
BpiI	GAAGAC	1 cut(s)	366
BsaJI	CCNNGG	2 cut(s)	57, 252
BsaWI	WCCGGW	1 cut(s)	353
BsaXI	ACNNNNNCTCC	4 cut(s)	53, 83, 120, 150
Bsc4I	CCNNNNNNNGG	3 cut(s)	176, 232, 278
Bse118I	RCCGGY	1 cut(s)	353
Bse3DI	GCAATG	2 cut(s)	378, 417
BseBI	CCWGG	1 cut(s)	58
BseDI	CCNNGG	2 cut(s)	57, 252
BseLI	CCNNNNNNNGG	3 cut(s)	176, 232, 278
BseMI	GCAATG	2 cut(s)	378, 417
BseXI	GCAGC	2 cut(s)	167, 178
Bsh1285I	CGRYCG	1 cut(s)	100
BshFI	GGCC	2 cut(s)	225, 236
BshTI	ACCGGT	1 cut(s)	353
BsiEI	CGRYCG	1 cut(s)	100
BsiSI	CCGG	2 cut(s)	126, 354
BslFI	GGGAC	1 cut(s)	74
BslI	CCNNNNNNNGG	3 cut(s)	176, 232, 278
BsmFI	GGGAC	1 cut(s)	74
BsnI	GGCC	2 cut(s)	225, 236
Bsp143I	GATC	1 cut(s)	471
BspACI	CCGC	3 cut(s)	115, 123, 238
BspANI	GGCC	2 cut(s)	225, 236
BspMAI	CTGCAG	1 cut(s)	168
BsrDI	GCAATG	2 cut(s)	378, 417
BsrFI	RCCGGY	1 cut(s)	353
BssAI	RCCGGY	1 cut(s)	353
BssECI	CCNNGG	2 cut(s)	57, 252
BssMI	GATC	1 cut(s)	471
Bst2UI	CCWGG	1 cut(s)	58
Bst4CI	ACNGT	4 cut(s)	65, 101, 428, 451
BstAPI	GCANNNNNTGC	1 cut(s)	428
BstC8I	GCNNGC	2 cut(s)	115, 238
BstDSI	CCRYGG	1 cut(s)	252
BstHHI	GCGC	1 cut(s)	343
BstKTI	GATC	1 cut(s)	474
BstMBI	GATC	1 cut(s)	471
BstMCI	CGRYCG	1 cut(s)	100
BstMWI	GCNNNNNNNGC	3 cut(s)	189, 419, 428
BstNI	CCWGG	1 cut(s)	58
BstSCI	CCNGG	1 cut(s)	56
BstSFI	CTRYAG	1 cut(s)	164
BstV1I	GCAGC	2 cut(s)	167, 178
BstV2I	GAAGAC	1 cut(s)	366
BsuRI	GGCC	2 cut(s)	225, 236
BtgI	CCRYGG	1 cut(s)	252
BtgZI	GCGATG	1 cut(s)	411
BtsIMutI	CAGTG	1 cut(s)	433
Cac8I	GCNNGC	2 cut(s)	115, 238
CfoI	GCGC	1 cut(s)	343
Cfr10I	RCCGGY	1 cut(s)	353
Cfr13I	GGNCC	2 cut(s)	224, 235
CspAI	ACCGGT	1 cut(s)	353
DpnI	GATC	1 cut(s)	473
DpnII	GATC	1 cut(s)	471
EciI	GGCGGA	1 cut(s)	112
Eco57I	CTGAAG	1 cut(s)	240
EcoRII	CCWGG	1 cut(s)	56
FaqI	GGGAC	1 cut(s)	74
FauI	CCCGC	2 cut(s)	122, 245
Fnu4HI	GCNGC	2 cut(s)	167, 181
Fsp4HI	GCNGC	2 cut(s)	167, 181
FspBI	CTAG	1 cut(s)	48
GlaI	GCGC	1 cut(s)	342
GluI	GCNGC	2 cut(s)	167, 181
HaeIII	GGCC	2 cut(s)	225, 236
HapII	CCGG	2 cut(s)	126, 354
HhaI	GCGC	1 cut(s)	343
Hin6I	GCGC	1 cut(s)	341
HinP1I	GCGC	1 cut(s)	341
HpaII	CCGG	2 cut(s)	126, 354
HphI	GGTGA	1 cut(s)	368
Hpy166II	GTNNAC	1 cut(s)	252
Hpy188I	TCNGA	2 cut(s)	13, 40
Hpy188III	TCNNGA	1 cut(s)	272
Hpy8I	GTNNAC	1 cut(s)	252
Hpy99I	CGWCG	2 cut(s)	95, 436
HpyAV	CCTTC	2 cut(s)	215, 251
HpyCH4III	ACNGT	4 cut(s)	65, 101, 428, 451
HpyCH4IV	ACGT	1 cut(s)	434
HpyCH4V	TGCA	3 cut(s)	166, 389, 422
HpyF10VI	GCNNNNNNNGC	3 cut(s)	189, 419, 428
HpySE526I	ACGT	1 cut(s)	434
HspAI	GCGC	1 cut(s)	341
Kzo9I	GATC	1 cut(s)	471
LmnI	GCTCC	3 cut(s)	74, 128, 215
LpnPI	CCDG	8 cut(s)	43, 70, 89, 139, 285, 367, 368, 446
Lsp1109I	GCAGC	2 cut(s)	167, 178
MaeI	CTAG	1 cut(s)	48
MaeII	ACGT	1 cut(s)	434
MalI	GATC	1 cut(s)	473
MboI	GATC	1 cut(s)	471
MboII	GAAGA	2 cut(s)	371, 454
MluCI	AATT	6 cut(s)	6, 32, 141, 154, 285, 465
MnlI	CCTC	1 cut(s)	128
MseI	TTAA	1 cut(s)	366
MspI	CCGG	2 cut(s)	126, 354
MspR9I	CCNGG	1 cut(s)	58
MvaI	CCWGG	1 cut(s)	58
MwoI	GCNNNNNNNGC	3 cut(s)	189, 419, 428
NdeII	GATC	1 cut(s)	471
PcsI	WCGNNNNNNNCGW	2 cut(s)	69, 87
PinAI	ACCGGT	1 cut(s)	353
PkrI	GCNGC	2 cut(s)	168, 182
Psp6I	CCWGG	1 cut(s)	56
PspGI	CCWGG	1 cut(s)	56
PspPI	GGNCC	2 cut(s)	224, 235
PstI	CTGCAG	1 cut(s)	168
SaqAI	TTAA	1 cut(s)	366
SatI	GCNGC	2 cut(s)	167, 181
Sau3AI	GATC	1 cut(s)	471
Sau96I	GGNCC	2 cut(s)	224, 235
ScrFI	CCNGG	1 cut(s)	58
SetI	ASST	6 cut(s)	59, 220, 262, 415, 437, 465
SfcI	CTRYAG	1 cut(s)	164
Sse9I	AATT	6 cut(s)	6, 32, 141, 154, 285, 465
SsiI	CCGC	3 cut(s)	115, 123, 238
SspMI	CTAG	1 cut(s)	48
StyD4I	CCNGG	1 cut(s)	56
TaaI	ACNGT	4 cut(s)	65, 101, 428, 451
TaiI	ACGT	1 cut(s)	437
TaqI	TCGA	5 cut(s)	30, 81, 207, 316, 327
TasI	AATT	6 cut(s)	6, 32, 141, 154, 285, 465
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TscAI	CASTG	1 cut(s)	433
TseI	GCWGC	2 cut(s)	166, 180
TspDTI	ATGAA	1 cut(s)	414
TspGWI	ACGGA	4 cut(s)	61, 228, 237, 269
TspRI	CASTG	1 cut(s)	433
XapI	RAATTY	2 cut(s)	6, 285
XspI	CTAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.