Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018658.1

Orthogroup ID

OG0024697

Physical Location & Seq

Genomic Coordinates Forward (+)

123 .. 1886

Gene Structure 1764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018658.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 731 bp

atgtctgaaaataagctccacggcgatgctgtggaaaaccctagactcacctgggacggttgcagcgtcttgcttgacatcaacgacggcgaccgtttggttttctcgcgcctctccgccggagcaaaattgaaaattgggaataagaattgctccctgcagccgttgattggctgccccttcggttccttttttcgagtcgaaaacggagcacaagggccttatttgtcaagatatactccctccaatgaaggtaatagtattcaagaacaaggggattgccaatcaaaagacgagttaagagataatcgagcattggttgataacaataaagcgcaaagcctaacgggggatgccatcaatgagatgcgactacagggcgcaagtggtgatgaaatagttgaagctctcattgccaacagcgcgacgtttgagaaaaagacactgttctcacaggagaaatataggcttaagaagcaaaaaaagtatgctcccattgtacttctcaggcggcctttcactagaagtatatgtgaggcgtacttgaagaaatatccggttagaattggattcttgcggatggatacgttatgtctgctgctttccatggctaatgtttctgctaattccgatgtccttgtagtcgacatggttggagggcttcttactggtgctgtggcagagcgtttaggaggtctgctatacaagcactttactatgtgctgctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0030488 GO:0031515 GO:0032259 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0034708 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043527 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gcd10p

Protein Analysis

243

Amino Acids

26.88

Weight (kDa)

8.58

Isoelectric Point (pI)

32.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024697)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g01150
rosa_multiflora	Rmu_sc0018658.1_g000001 Rmu_sc0018659.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	645
AccII	CGCG	2 cut(s)	109, 425
AciI	CCGC	3 cut(s)	117, 511, 577
AfaI	GTAC	2 cut(s)	501, 542
AfiI	CCNNNNNNNGG	2 cut(s)	170, 349
AflII	CTTAAG	1 cut(s)	470
AgsI	TTSAA	4 cut(s)	133, 266, 404, 547
AjnI	CCWGG	1 cut(s)	50
AluBI	AGCT	2 cut(s)	16, 407
AluI	AGCT	2 cut(s)	16, 407
Alw21I	GWGCWC	1 cut(s)	214
AoxI	GGCC	2 cut(s)	218, 512
ApeKI	GCWGC	5 cut(s)	63, 160, 174, 598, 723
AspLEI	GCGC	4 cut(s)	111, 337, 383, 425
AspS9I	GGNCC	1 cut(s)	218
AsuHPI	GGTGA	2 cut(s)	40, 401
Bbv12I	GWGCWC	1 cut(s)	214
BbvI	GCAGC	5 cut(s)	75, 161, 172, 585, 710
BccI	CCATC	2 cut(s)	365, 574
BceAI	ACGGC	3 cut(s)	37, 103, 148
BciT130I	CCWGG	1 cut(s)	52
BciVI	GTATCC	1 cut(s)	577
BfaI	CTAG	2 cut(s)	42, 522
BfmI	CTRYAG	2 cut(s)	158, 374
BfrI	CTTAAG	1 cut(s)	470
BfuI	GTATCC	1 cut(s)	577
BisI	GCNGC	6 cut(s)	64, 161, 175, 512, 599, 724
BlsI	GCNGC	6 cut(s)	65, 162, 176, 513, 600, 725
Bme1390I	CCNGG	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	218
BmiI	GGNNCC	1 cut(s)	187
BmrFI	CCNGG	1 cut(s)	52
BmsI	GCATC	3 cut(s)	16, 343, 357
BsaJI	CCNNGG	3 cut(s)	19, 51, 606
BsaWI	WCCGGW	1 cut(s)	556
Bsc4I	CCNNNNNNNGG	2 cut(s)	170, 349
Bse1I	ACTGG	1 cut(s)	673
Bse3DI	GCAATG	1 cut(s)	411
BseBI	CCWGG	1 cut(s)	52
BseDI	CCNNGG	3 cut(s)	19, 51, 606
BseGI	GGATG	2 cut(s)	358, 585
BseLI	CCNNNNNNNGG	2 cut(s)	170, 349
BseMI	GCAATG	1 cut(s)	411
BseMII	CTCAG	1 cut(s)	520
BseNI	ACTGG	1 cut(s)	673
BseXI	GCAGC	5 cut(s)	75, 161, 172, 585, 710
Bsh1236I	CGCG	2 cut(s)	109, 425
Bsh1285I	CGRYCG	1 cut(s)	94
BshFI	GGCC	2 cut(s)	220, 514
BsiEI	CGRYCG	1 cut(s)	94
BsiHKAI	GWGCWC	1 cut(s)	214
BsiSI	CCGG	2 cut(s)	120, 557
BslFI	GGGAC	1 cut(s)	68
BslI	CCNNNNNNNGG	2 cut(s)	170, 349
BsmFI	GGGAC	1 cut(s)	68
BsnI	GGCC	2 cut(s)	220, 514
Bsp1286I	GDGCHC	1 cut(s)	214
Bsp19I	CCATGG	1 cut(s)	606
BspACI	CCGC	3 cut(s)	117, 511, 577
BspANI	GGCC	2 cut(s)	220, 514
BspCNI	CTCAG	1 cut(s)	519
BspFNI	CGCG	2 cut(s)	109, 425
BspLI	GGNNCC	1 cut(s)	187
BspMAI	CTGCAG	1 cut(s)	162
BspTI	CTTAAG	1 cut(s)	470
BsrDI	GCAATG	1 cut(s)	411
BsrI	ACTGG	1 cut(s)	673
BssECI	CCNNGG	3 cut(s)	19, 51, 606
BssT1I	CCWWGG	1 cut(s)	606
Bst2UI	CCWGG	1 cut(s)	52
Bst4CI	ACNGT	3 cut(s)	59, 95, 447
BstAFI	CTTAAG	1 cut(s)	470
BstDEI	CTNAG	1 cut(s)	506
BstDSI	CCRYGG	2 cut(s)	19, 606
BstF5I	GGATG	2 cut(s)	358, 585
BstFNI	CGCG	2 cut(s)	109, 425
BstHHI	GCGC	4 cut(s)	111, 337, 383, 425
BstMCI	CGRYCG	1 cut(s)	94
BstMWI	GCNNNNNNNGC	4 cut(s)	413, 422, 475, 706
BstNI	CCWGG	1 cut(s)	52
BstSCI	CCNGG	1 cut(s)	50
BstSFI	CTRYAG	2 cut(s)	158, 374
BstUI	CGCG	2 cut(s)	109, 425
BstV1I	GCAGC	5 cut(s)	75, 161, 172, 585, 710
BsuI	GTATCC	1 cut(s)	577
BsuRI	GGCC	2 cut(s)	220, 514
BtgI	CCRYGG	2 cut(s)	19, 606
BtgZI	GCGATG	1 cut(s)	39
BtsCI	GGATG	2 cut(s)	358, 585
BtsIMutI	CAGTG	1 cut(s)	443
CfoI	GCGC	4 cut(s)	111, 337, 383, 425
Cfr13I	GGNCC	1 cut(s)	218
CseI	GACGC	1 cut(s)	55
Csp6I	GTAC	2 cut(s)	500, 541
CviAII	CATG	2 cut(s)	607, 649
CviQI	GTAC	2 cut(s)	500, 541
DdeI	CTNAG	1 cut(s)	506
EciI	GGCGGA	1 cut(s)	106
Eco130I	CCWWGG	1 cut(s)	606
EcoO109I	RGGNCCY	1 cut(s)	218
EcoRII	CCWGG	1 cut(s)	50
EcoT14I	CCWWGG	1 cut(s)	606
ErhI	CCWWGG	1 cut(s)	606
FaeI	CATG	2 cut(s)	610, 652
FaqI	GGGAC	1 cut(s)	68
FatI	CATG	2 cut(s)	606, 648
FblI	GTMKAC	1 cut(s)	645
Fnu4HI	GCNGC	6 cut(s)	64, 161, 175, 512, 599, 724
FokI	GGATG	2 cut(s)	365, 592
Fsp4HI	GCNGC	6 cut(s)	64, 161, 175, 512, 599, 724
FspBI	CTAG	2 cut(s)	42, 522
GlaI	GCGC	4 cut(s)	110, 336, 382, 424
GluI	GCNGC	6 cut(s)	64, 161, 175, 512, 599, 724
HaeIII	GGCC	2 cut(s)	220, 514
HapII	CCGG	2 cut(s)	120, 557
HgaI	GACGC	1 cut(s)	55
HhaI	GCGC	4 cut(s)	111, 337, 383, 425
Hin1II	CATG	2 cut(s)	610, 652
Hin6I	GCGC	4 cut(s)	109, 335, 381, 423
HinP1I	GCGC	4 cut(s)	109, 335, 381, 423
HincII	GTYRAC	1 cut(s)	646
HindII	GTYRAC	1 cut(s)	646
HinfI	GANTC	3 cut(s)	45, 198, 570
HpaII	CCGG	2 cut(s)	120, 557
HphI	GGTGA	2 cut(s)	40, 401
Hpy166II	GTNNAC	1 cut(s)	646
Hpy188I	TCNGA	2 cut(s)	7, 631
Hpy188III	TCNNGA	2 cut(s)	231, 266
Hpy8I	GTNNAC	1 cut(s)	646
Hpy99I	CGWCG	2 cut(s)	89, 430
HpyAV	CCTTC	2 cut(s)	190, 245
HpyCH4III	ACNGT	3 cut(s)	59, 95, 447
HpyCH4IV	ACGT	2 cut(s)	428, 587
HpyCH4V	TGCA	2 cut(s)	63, 160
HpyF10VI	GCNNNNNNNGC	4 cut(s)	413, 422, 475, 706
HpyF3I	CTNAG	1 cut(s)	506
HpySE526I	ACGT	2 cut(s)	428, 587
Hsp92II	CATG	2 cut(s)	610, 652
HspAI	GCGC	4 cut(s)	109, 335, 381, 423
LmnI	GCTCC	5 cut(s)	21, 122, 158, 209, 496
LpnPI	CCDG	9 cut(s)	37, 64, 133, 170, 362, 440, 493, 570, 654
Lsp1109I	GCAGC	5 cut(s)	75, 161, 172, 585, 710
LweI	GCATC	3 cut(s)	16, 343, 357
MaeI	CTAG	2 cut(s)	42, 522
MaeII	ACGT	2 cut(s)	428, 587
MboII	GAAGA	1 cut(s)	559
MhlI	GDGCHC	1 cut(s)	214
MluCI	AATT	5 cut(s)	128, 135, 148, 564, 625
MlyI	GAGTC	2 cut(s)	39, 207
MmeI	TCCRAC	1 cut(s)	634
MnlI	CCTC	5 cut(s)	122, 253, 529, 650, 686
MseI	TTAA	2 cut(s)	299, 471
MslI	CAYNNNNRTG	1 cut(s)	24
MspCI	CTTAAG	1 cut(s)	470
MspI	CCGG	2 cut(s)	120, 557
MspR9I	CCNGG	1 cut(s)	52
MvaI	CCWGG	1 cut(s)	52
MvnI	CGCG	2 cut(s)	109, 425
MwoI	GCNNNNNNNGC	4 cut(s)	413, 422, 475, 706
NcoI	CCATGG	1 cut(s)	606
NlaIII	CATG	2 cut(s)	610, 652
NlaIV	GGNNCC	1 cut(s)	187
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PfeI	GAWTC	1 cut(s)	570
PkrI	GCNGC	6 cut(s)	65, 162, 176, 513, 600, 725
PleI	GAGTC	2 cut(s)	39, 206
PpsI	GAGTC	2 cut(s)	39, 206
Psp6I	CCWGG	1 cut(s)	50
PspGI	CCWGG	1 cut(s)	50
PspN4I	GGNNCC	1 cut(s)	187
PspPI	GGNCC	1 cut(s)	218
PstI	CTGCAG	1 cut(s)	162
RsaI	GTAC	2 cut(s)	501, 542
RsaNI	GTAC	2 cut(s)	500, 541
RseI	CAYNNNNRTG	1 cut(s)	24
SalI	GTCGAC	1 cut(s)	644
SaqAI	TTAA	2 cut(s)	299, 471
SatI	GCNGC	6 cut(s)	64, 161, 175, 512, 599, 724
Sau96I	GGNCC	1 cut(s)	218
SchI	GAGTC	2 cut(s)	39, 207
ScrFI	CCNGG	1 cut(s)	52
SduI	GDGCHC	1 cut(s)	214
SetI	ASST	7 cut(s)	18, 53, 256, 409, 431, 590, 697
SfaNI	GCATC	3 cut(s)	16, 343, 357
SfcI	CTRYAG	2 cut(s)	158, 374
SmiMI	CAYNNNNRTG	1 cut(s)	24
SmlI	CTYRAG	1 cut(s)	470
SmoI	CTYRAG	1 cut(s)	470
Sse9I	AATT	5 cut(s)	128, 135, 148, 564, 625
SsiI	CCGC	3 cut(s)	117, 511, 577
SspMI	CTAG	2 cut(s)	42, 522
StyD4I	CCNGG	1 cut(s)	50
StyI	CCWWGG	1 cut(s)	606
TaaI	ACNGT	3 cut(s)	59, 95, 447
TaiI	ACGT	2 cut(s)	431, 590
TaqI	TCGA	4 cut(s)	196, 201, 310, 645
TasI	AATT	5 cut(s)	128, 135, 148, 564, 625
TatI	WGTACW	1 cut(s)	499
TauI	GCSGC	1 cut(s)	514
TfiI	GAWTC	1 cut(s)	570
Tru1I	TTAA	2 cut(s)	299, 471
Tru9I	TTAA	2 cut(s)	299, 471
TscAI	CASTG	1 cut(s)	450
TseI	GCWGC	5 cut(s)	63, 160, 174, 598, 723
TspDTI	ATGAA	2 cut(s)	264, 408
TspGWI	ACGGA	1 cut(s)	222
TspRI	CASTG	1 cut(s)	450
Vha464I	CTTAAG	1 cut(s)	470
XmiI	GTMKAC	1 cut(s)	645
XspI	CTAG	2 cut(s)	42, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.