Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018659.1

Orthogroup ID

OG0024697

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1163

Gene Structure 1163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018659.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

acagggcgcaagtggtgatgaaatagttgaagctctcattgccaacagcgcgacgtttgagaaaaagacactgttctcacaggagaaatataggcttaagaagcaaaaaaagtatgctcccattgtacttctcaggcggcctttcactagaagtatatgtgaggcgtacttgaagaaatatccggttagaattggattcttgcggatggatacgttatgtctgctgctttccatggctaatgtttctgctaattccgatgtccttgtagtcgacatggttggagggcttcttactggtgctgtggcagagcgtttaggaggtctgctatacaagcactttactatgtgctgctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0030488 GO:0031515 GO:0032259 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0034708 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043527 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gcd10p

Protein Analysis

118

Amino Acids

13.18

Weight (kDa)

9.42

Isoelectric Point (pI)

33.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024697)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g01150
rosa_multiflora	Rmu_sc0018658.1_g000001 Rmu_sc0018659.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	271
AccII	CGCG	1 cut(s)	51
AciI	CCGC	2 cut(s)	137, 203
AfaI	GTAC	2 cut(s)	127, 168
AflII	CTTAAG	1 cut(s)	96
AgsI	TTSAA	2 cut(s)	30, 173
AluBI	AGCT	1 cut(s)	33
AluI	AGCT	1 cut(s)	33
AoxI	GGCC	1 cut(s)	138
ApeKI	GCWGC	2 cut(s)	224, 349
AspLEI	GCGC	2 cut(s)	9, 51
AsuHPI	GGTGA	1 cut(s)	27
BbvI	GCAGC	2 cut(s)	211, 336
BccI	CCATC	1 cut(s)	200
BciVI	GTATCC	1 cut(s)	203
BfaI	CTAG	1 cut(s)	148
BfrI	CTTAAG	1 cut(s)	96
BfuI	GTATCC	1 cut(s)	203
BisI	GCNGC	3 cut(s)	138, 225, 350
BlsI	GCNGC	3 cut(s)	139, 226, 351
BsaJI	CCNNGG	1 cut(s)	232
BsaWI	WCCGGW	1 cut(s)	182
Bse1I	ACTGG	1 cut(s)	299
Bse3DI	GCAATG	1 cut(s)	37
BseDI	CCNNGG	1 cut(s)	232
BseGI	GGATG	1 cut(s)	211
BseMI	GCAATG	1 cut(s)	37
BseMII	CTCAG	1 cut(s)	146
BseNI	ACTGG	1 cut(s)	299
BseXI	GCAGC	2 cut(s)	211, 336
Bsh1236I	CGCG	1 cut(s)	51
BshFI	GGCC	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	183
BsnI	GGCC	1 cut(s)	140
Bsp19I	CCATGG	1 cut(s)	232
BspACI	CCGC	2 cut(s)	137, 203
BspANI	GGCC	1 cut(s)	140
BspCNI	CTCAG	1 cut(s)	145
BspFNI	CGCG	1 cut(s)	51
BspTI	CTTAAG	1 cut(s)	96
BsrDI	GCAATG	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	299
BssECI	CCNNGG	1 cut(s)	232
BssT1I	CCWWGG	1 cut(s)	232
Bst4CI	ACNGT	1 cut(s)	73
BstAFI	CTTAAG	1 cut(s)	96
BstDEI	CTNAG	1 cut(s)	132
BstDSI	CCRYGG	1 cut(s)	232
BstF5I	GGATG	1 cut(s)	211
BstFNI	CGCG	1 cut(s)	51
BstHHI	GCGC	2 cut(s)	9, 51
BstMWI	GCNNNNNNNGC	4 cut(s)	39, 48, 101, 332
BstUI	CGCG	1 cut(s)	51
BstV1I	GCAGC	2 cut(s)	211, 336
BsuI	GTATCC	1 cut(s)	203
BsuRI	GGCC	1 cut(s)	140
BtgI	CCRYGG	1 cut(s)	232
BtsCI	GGATG	1 cut(s)	211
BtsIMutI	CAGTG	1 cut(s)	69
CfoI	GCGC	2 cut(s)	9, 51
Csp6I	GTAC	2 cut(s)	126, 167
CviAII	CATG	2 cut(s)	233, 275
CviJI	RGCY	5 cut(s)	33, 95, 140, 237, 287
CviKI_1	RGCY	5 cut(s)	33, 95, 140, 237, 287
CviQI	GTAC	2 cut(s)	126, 167
DdeI	CTNAG	1 cut(s)	132
Eco130I	CCWWGG	1 cut(s)	232
EcoT14I	CCWWGG	1 cut(s)	232
ErhI	CCWWGG	1 cut(s)	232
FaeI	CATG	2 cut(s)	236, 278
FaiI	YATR	9 cut(s)	91, 115, 156, 158, 218, 234, 276, 329, 345
FatI	CATG	2 cut(s)	232, 274
FblI	GTMKAC	1 cut(s)	271
Fnu4HI	GCNGC	3 cut(s)	138, 225, 350
FokI	GGATG	1 cut(s)	218
Fsp4HI	GCNGC	3 cut(s)	138, 225, 350
FspBI	CTAG	1 cut(s)	148
GlaI	GCGC	2 cut(s)	8, 50
GluI	GCNGC	3 cut(s)	138, 225, 350
HaeIII	GGCC	1 cut(s)	140
HapII	CCGG	1 cut(s)	183
HhaI	GCGC	2 cut(s)	9, 51
Hin1II	CATG	2 cut(s)	236, 278
Hin6I	GCGC	2 cut(s)	7, 49
HinP1I	GCGC	2 cut(s)	7, 49
HincII	GTYRAC	1 cut(s)	272
HindII	GTYRAC	1 cut(s)	272
HinfI	GANTC	1 cut(s)	196
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	1 cut(s)	27
Hpy166II	GTNNAC	1 cut(s)	272
Hpy188I	TCNGA	1 cut(s)	257
Hpy8I	GTNNAC	1 cut(s)	272
Hpy99I	CGWCG	1 cut(s)	56
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4IV	ACGT	2 cut(s)	54, 213
HpyF10VI	GCNNNNNNNGC	4 cut(s)	39, 48, 101, 332
HpyF3I	CTNAG	1 cut(s)	132
HpySE526I	ACGT	2 cut(s)	54, 213
Hsp92II	CATG	2 cut(s)	236, 278
HspAI	GCGC	2 cut(s)	7, 49
LmnI	GCTCC	1 cut(s)	122
LpnPI	CCDG	4 cut(s)	66, 119, 196, 280
Lsp1109I	GCAGC	2 cut(s)	211, 336
MaeI	CTAG	1 cut(s)	148
MaeII	ACGT	2 cut(s)	54, 213
MboII	GAAGA	1 cut(s)	185
MluCI	AATT	2 cut(s)	190, 251
MmeI	TCCRAC	1 cut(s)	260
MnlI	CCTC	3 cut(s)	155, 276, 312
MseI	TTAA	1 cut(s)	97
MspCI	CTTAAG	1 cut(s)	96
MspI	CCGG	1 cut(s)	183
MvnI	CGCG	1 cut(s)	51
MwoI	GCNNNNNNNGC	4 cut(s)	39, 48, 101, 332
NcoI	CCATGG	1 cut(s)	232
NlaIII	CATG	2 cut(s)	236, 278
PfeI	GAWTC	1 cut(s)	196
PkrI	GCNGC	3 cut(s)	139, 226, 351
RsaI	GTAC	2 cut(s)	127, 168
RsaNI	GTAC	2 cut(s)	126, 167
SalI	GTCGAC	1 cut(s)	270
SaqAI	TTAA	1 cut(s)	97
SatI	GCNGC	3 cut(s)	138, 225, 350
SetI	ASST	4 cut(s)	35, 57, 216, 323
SmlI	CTYRAG	1 cut(s)	96
SmoI	CTYRAG	1 cut(s)	96
Sse9I	AATT	2 cut(s)	190, 251
SsiI	CCGC	2 cut(s)	137, 203
SspMI	CTAG	1 cut(s)	148
StyI	CCWWGG	1 cut(s)	232
TaaI	ACNGT	1 cut(s)	73
TaiI	ACGT	2 cut(s)	57, 216
TaqI	TCGA	1 cut(s)	271
TasI	AATT	2 cut(s)	190, 251
TatI	WGTACW	1 cut(s)	125
TauI	GCSGC	1 cut(s)	140
TfiI	GAWTC	1 cut(s)	196
Tru1I	TTAA	1 cut(s)	97
Tru9I	TTAA	1 cut(s)	97
TscAI	CASTG	1 cut(s)	76
TseI	GCWGC	2 cut(s)	224, 349
TspDTI	ATGAA	1 cut(s)	34
TspRI	CASTG	1 cut(s)	76
Vha464I	CTTAAG	1 cut(s)	96
XmiI	GTMKAC	1 cut(s)	271
XspI	CTAG	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.