pycom15g01610

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0021285
Physical Location & Seq
Reverse (-)
934806 .. 935291
486 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 396 bp
ATGACACCTGCAAATTCGACAAGAGCAAAATTGTTTCTTCCGTGTCTAACTTCAGCGTTATTTCTACCGACGATAGATCAAATCGCTGCAAATTTGGTTAACCATGGCCCTCTTGCAGTTGGGATCAATGCGGTGTTCATGCAAACATACGTAGGCGGAGTTTCGTGCCCTTACATCTGCGGAAAGCGAATTGATCACGGAGTGCTTCTGGTGGGTTATGGTTCTTCGGGTTTCGCTCCGATCCGATTCAAGGAAAAACCTTACTGGATCTTGAAGAATTCATGGGGACAGAGCTGGGGAGAGCAGGGATATTACAAGATCTGTAGGGGTTATAATTCTTGTGGGGTGGATTCCTTGGTCTCAACTGTTGCTGCTCTGCATGCATCCAACGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04210 map04142 map04210
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

132

Amino Acids

14.16

Weight (kDa)

8.87

Isoelectric Point (pI)

20.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C1 PF00112 26 - 122 5.7e-27 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021285)

Species Orthologous Gene IDs
pyrus_communis pycom15g01610
rosa_multiflora Rmu_co8479711.1_g000001 Rmu_sc0035218.1_g000001
rosa_samantha Rh6AG424000 Rh6CG437000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 333
AarI CACCTGC 1 cut(s) 16
Acc36I ACCTGC 1 cut(s) 16
AciI CCGC 3 cut(s) 131, 156, 180
AclWI GGATC 3 cut(s) 131, 235, 275
AcsI RAATTY 3 cut(s) 13, 91, 277
AcuI CTGAAG 1 cut(s) 36
AdeI CACNNNGTG 1 cut(s) 202
AfiI CCNNNNNNNGG 1 cut(s) 250
AgsI TTSAA 2 cut(s) 250, 274
AluBI AGCT 1 cut(s) 294
AluI AGCT 1 cut(s) 294
Alw26I GTCTC 1 cut(s) 364
AlwI GGATC 3 cut(s) 131, 235, 275
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 2 cut(s) 86, 371
ApoI RAATTY 3 cut(s) 13, 91, 277
AspS9I GGNCC 1 cut(s) 107
BaeGI GKGCMC 1 cut(s) 170
BbvI GCAGC 2 cut(s) 73, 358
BclI TGATCA 1 cut(s) 193
BcoDI GTCTC 1 cut(s) 364
BfmI CTRYAG 1 cut(s) 322
BfuAI ACCTGC 1 cut(s) 16
BglII AGATCT 1 cut(s) 318
BisI GCNGC 2 cut(s) 87, 372
BlsI GCNGC 2 cut(s) 88, 373
BmgT120I GGNCC 1 cut(s) 107
BmsI GCATC 1 cut(s) 392
BsaAI YACGTR 1 cut(s) 151
BsaI GGTCTC 1 cut(s) 364
BsaJI CCNNGG 2 cut(s) 103, 354
Bsc4I CCNNNNNNNGG 1 cut(s) 250
Bse1I ACTGG 1 cut(s) 269
BseDI CCNNGG 2 cut(s) 103, 354
BseGI GGATG 1 cut(s) 383
BseLI CCNNNNNNNGG 1 cut(s) 250
BseNI ACTGG 1 cut(s) 269
BseSI GKGCMC 1 cut(s) 170
BseXI GCAGC 2 cut(s) 73, 358
BseYI CCCAGC 1 cut(s) 294
BshFI GGCC 1 cut(s) 108
BslFI GGGAC 1 cut(s) 300
BslI CCNNNNNNNGG 1 cut(s) 250
BsmAI GTCTC 1 cut(s) 364
BsmFI GGGAC 1 cut(s) 300
BsnI GGCC 1 cut(s) 108
Bso31I GGTCTC 1 cut(s) 364
Bsp1286I GDGCHC 1 cut(s) 170
Bsp143I GATC 6 cut(s) 76, 123, 193, 240, 267, 318
Bsp19I CCATGG 1 cut(s) 103
BspACI CCGC 3 cut(s) 131, 156, 180
BspANI GGCC 1 cut(s) 108
BspMI ACCTGC 1 cut(s) 16
BspPI GGATC 3 cut(s) 131, 235, 275
BspTNI GGTCTC 1 cut(s) 364
BsrI ACTGG 1 cut(s) 269
BssECI CCNNGG 2 cut(s) 103, 354
BssMI GATC 6 cut(s) 76, 123, 193, 240, 267, 318
BssT1I CCWWGG 2 cut(s) 103, 354
Bst4CI ACNGT 1 cut(s) 367
BstBAI YACGTR 1 cut(s) 151
BstC8I GCNNGC 1 cut(s) 381
BstDSI CCRYGG 1 cut(s) 103
BstF5I GGATG 1 cut(s) 383
BstKTI GATC 6 cut(s) 79, 126, 196, 243, 270, 321
BstMAI GTCTC 1 cut(s) 364
BstMBI GATC 6 cut(s) 76, 123, 193, 240, 267, 318
BstMWI GCNNNNNNNGC 1 cut(s) 380
BstNSI RCATGY 1 cut(s) 383
BstSFI CTRYAG 1 cut(s) 322
BstSLI GKGCMC 1 cut(s) 170
BstSNI TACGTA 1 cut(s) 151
BstV1I GCAGC 2 cut(s) 73, 358
BstX2I RGATCY 2 cut(s) 267, 318
BstYI RGATCY 2 cut(s) 267, 318
BsuRI GGCC 1 cut(s) 108
BtgI CCRYGG 1 cut(s) 103
BtsCI GGATG 1 cut(s) 383
BveI ACCTGC 1 cut(s) 16
Cac8I GCNNGC 1 cut(s) 381
Cfr13I GGNCC 1 cut(s) 107
CviAII CATG 4 cut(s) 104, 139, 282, 380
CviJI RGCY 2 cut(s) 108, 294
CviKI_1 RGCY 2 cut(s) 108, 294
DpnI GATC 6 cut(s) 78, 125, 195, 242, 269, 320
DpnII GATC 6 cut(s) 76, 123, 193, 240, 267, 318
DraIII CACNNNGTG 1 cut(s) 202
EciI GGCGGA 1 cut(s) 171
Eco105I TACGTA 1 cut(s) 151
Eco130I CCWWGG 2 cut(s) 103, 354
Eco31I GGTCTC 1 cut(s) 364
Eco57I CTGAAG 1 cut(s) 36
EcoRI GAATTC 1 cut(s) 277
EcoT14I CCWWGG 2 cut(s) 103, 354
EcoT22I ATGCAT 1 cut(s) 385
ErhI CCWWGG 2 cut(s) 103, 354
FaeI CATG 4 cut(s) 107, 142, 285, 383
FaiI YATR 7 cut(s) 105, 140, 148, 219, 283, 333, 381
FaqI GGGAC 1 cut(s) 300
FatI CATG 4 cut(s) 103, 138, 281, 379
FbaI TGATCA 1 cut(s) 193
Fnu4HI GCNGC 2 cut(s) 87, 372
FokI GGATG 1 cut(s) 370
Fsp4HI GCNGC 2 cut(s) 87, 372
GluI GCNGC 2 cut(s) 87, 372
GsaI CCCAGC 1 cut(s) 298
HaeIII GGCC 1 cut(s) 108
Hin1II CATG 4 cut(s) 107, 142, 285, 383
HincII GTYRAC 1 cut(s) 100
HindII GTYRAC 1 cut(s) 100
HinfI GANTC 2 cut(s) 246, 350
HpaI GTTAAC 1 cut(s) 100
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 2 cut(s) 240, 245
Hpy188III TCNNGA 1 cut(s) 271
Hpy8I GTNNAC 1 cut(s) 100
Hpy99I CGWCG 1 cut(s) 73
HpyCH4III ACNGT 1 cut(s) 367
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 6 cut(s) 11, 89, 116, 142, 379, 383
HpyF10VI GCNNNNNNNGC 1 cut(s) 380
HpySE526I ACGT 1 cut(s) 150
Hsp92II CATG 4 cut(s) 107, 142, 285, 383
Ksp22I TGATCA 1 cut(s) 193
KspAI GTTAAC 1 cut(s) 100
Kzo9I GATC 6 cut(s) 76, 123, 193, 240, 267, 318
LmnI GCTCC 1 cut(s) 241
LpnPI CCDG 5 cut(s) 21, 194, 250, 280, 290
Lsp1109I GCAGC 2 cut(s) 73, 358
LweI GCATC 1 cut(s) 392
MaeII ACGT 1 cut(s) 150
MalI GATC 6 cut(s) 78, 125, 195, 242, 269, 320
MboI GATC 6 cut(s) 76, 123, 193, 240, 267, 318
MboII GAAGA 3 cut(s) 29, 216, 286
MflI RGATCY 2 cut(s) 267, 318
MhlI GDGCHC 1 cut(s) 170
MluCI AATT 6 cut(s) 13, 29, 91, 189, 277, 334
MnlI CCTC 1 cut(s) 120
Mph1103I ATGCAT 1 cut(s) 385
MseI TTAA 1 cut(s) 99
MwoI GCNNNNNNNGC 1 cut(s) 380
NcoI CCATGG 1 cut(s) 103
NdeII GATC 6 cut(s) 76, 123, 193, 240, 267, 318
NlaIII CATG 4 cut(s) 107, 142, 285, 383
NsiI ATGCAT 1 cut(s) 385
NspI RCATGY 1 cut(s) 383
PaeI GCATGC 1 cut(s) 383
PaqCI CACCTGC 1 cut(s) 16
PfeI GAWTC 2 cut(s) 246, 350
PkrI GCNGC 2 cut(s) 88, 373
Ppu21I YACGTR 1 cut(s) 151
PsiI TTATAA 1 cut(s) 333
PspFI CCCAGC 1 cut(s) 294
PspPI GGNCC 1 cut(s) 107
PsuI RGATCY 2 cut(s) 267, 318
SaqAI TTAA 1 cut(s) 99
SatI GCNGC 2 cut(s) 87, 372
Sau3AI GATC 6 cut(s) 76, 123, 193, 240, 267, 318
Sau96I GGNCC 1 cut(s) 107
SduI GDGCHC 1 cut(s) 170
SetI ASST 4 cut(s) 10, 153, 262, 296
SfaNI GCATC 1 cut(s) 392
SfcI CTRYAG 1 cut(s) 322
SnaBI TACGTA 1 cut(s) 151
SphI GCATGC 1 cut(s) 383
Sse9I AATT 6 cut(s) 13, 29, 91, 189, 277, 334
SsiI CCGC 3 cut(s) 131, 156, 180
StyI CCWWGG 2 cut(s) 103, 354
TaaI ACNGT 1 cut(s) 367
TaiI ACGT 1 cut(s) 153
TaqI TCGA 1 cut(s) 17
TasI AATT 6 cut(s) 13, 29, 91, 189, 277, 334
TfiI GAWTC 2 cut(s) 246, 350
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TseI GCWGC 2 cut(s) 86, 371
TspDTI ATGAA 2 cut(s) 127, 270
TspGWI ACGGA 2 cut(s) 30, 213
XapI RAATTY 3 cut(s) 13, 91, 277
XceI RCATGY 1 cut(s) 383
Zsp2I ATGCAT 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.