Rh6AG424000

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0021285
Physical Location & Seq
Forward (+)
61644617 .. 61645174
558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG424000.1

Sequence Viewer

Length: 558 bp
ATGGCATTGTCTTATAATATGAGCCTTTACATTTTGCAGTGTGATCCAGAAGAATATGGTTCATGTGACTCAGGCTGTAGTGGTGGACTGATGACCAATGCCTTTGAGTACGCACTCAAGGCTGGGGGTTTGGAGCAAGAGAAGGACTACCCTTACACTGGGACTGATCGCGGTACCTGCAAATTTGACAAGAGCAAAGTTGTTGCTACTGTCTCCAACTTCAGTGTTGTTTCCCTTGACGAAGATCAAATTGCTGCAAATTTGGTCCACAATGGCCCTCTTGCAATTGGCATCAATGCGGTGTTCATGCAAACATACGTGGGGGGAGTCTCGTGCCCTTACATCTGCGCAAAACATCGTCTGGATCACGGGGTGCTTCTGGTGGGTTACGGCTCCTCTGGGTTTGCTCCGATACGCTTCAAGGAGAAGCCTTACTGGATCATAAAGAATTCATGGGGACAGAGTTGGGGAGAGGAAGGTTATTACAAGATCTGCAGGGGTCATAATGTTTGTGGGGTGGATAGTATGGTCTCTACCGTTGCTGCTATGCACACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04210 map04142 map04210
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

185

Amino Acids

20.14

Weight (kDa)

5.68

Isoelectric Point (pI)

30.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C1 PF00112 11 - 179 3.9e-48 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021285)

Species Orthologous Gene IDs
pyrus_communis pycom15g01610
rosa_multiflora Rmu_co8479711.1_g000001 Rmu_sc0035218.1_g000001
rosa_samantha Rh6AG424000 Rh6CG437000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 15
Acc16I TGCGCA 1 cut(s) 349
Acc36I ACCTGC 1 cut(s) 185
Acc65I GGTACC 1 cut(s) 173
AccB1I GGYRCC 1 cut(s) 173
AccII CGCG 1 cut(s) 171
AciI CCGC 2 cut(s) 171, 299
AclWI GGATC 3 cut(s) 38, 372, 446
AcsI RAATTY 3 cut(s) 182, 259, 448
AcuI CTGAAG 1 cut(s) 205
AdeI CACNNNGTG 1 cut(s) 373
AfaI GTAC 2 cut(s) 110, 175
AfiI CCNNNNNNNGG 1 cut(s) 158
AgsI TTSAA 1 cut(s) 421
Alw26I GTCTC 3 cut(s) 217, 334, 535
AlwI GGATC 3 cut(s) 38, 372, 446
AoxI GGCC 1 cut(s) 274
ApeKI GCWGC 2 cut(s) 254, 542
ApoI RAATTY 3 cut(s) 182, 259, 448
Asp718I GGTACC 1 cut(s) 173
AspLEI GCGC 1 cut(s) 350
AspS9I GGNCC 2 cut(s) 265, 275
AvaII GGWCC 1 cut(s) 265
BaeGI GKGCMC 1 cut(s) 338
BanI GGYRCC 1 cut(s) 173
BauI CACGAG 1 cut(s) 331
BbvI GCAGC 2 cut(s) 241, 529
BceAI ACGGC 1 cut(s) 406
BcoDI GTCTC 3 cut(s) 217, 334, 535
BfmI CTRYAG 2 cut(s) 76, 493
BfuAI ACCTGC 1 cut(s) 185
BglII AGATCT 1 cut(s) 489
BisI GCNGC 2 cut(s) 255, 543
BlsI GCNGC 2 cut(s) 256, 544
Bme18I GGWCC 1 cut(s) 265
BmgT120I GGNCC 2 cut(s) 265, 275
BmiI GGNNCC 2 cut(s) 175, 394
BmrI ACTGGG 1 cut(s) 168
BmsI GCATC 1 cut(s) 300
BmuI ACTGGG 1 cut(s) 168
BpuEI CTTGAG 1 cut(s) 101
BsaAI YACGTR 1 cut(s) 319
BsaI GGTCTC 1 cut(s) 535
Bsc4I CCNNNNNNNGG 1 cut(s) 158
Bse1I ACTGG 2 cut(s) 163, 440
BseLI CCNNNNNNNGG 1 cut(s) 158
BseMII CTCAG 1 cut(s) 84
BseNI ACTGG 2 cut(s) 163, 440
BseRI GAGGAG 1 cut(s) 385
BseSI GKGCMC 1 cut(s) 338
BseXI GCAGC 2 cut(s) 241, 529
BseYI CCCAGC 1 cut(s) 122
Bsh1236I CGCG 1 cut(s) 171
BshFI GGCC 1 cut(s) 276
BshNI GGYRCC 1 cut(s) 173
BslFI GGGAC 2 cut(s) 175, 471
BslI CCNNNNNNNGG 1 cut(s) 158
BsmAI GTCTC 3 cut(s) 217, 334, 535
BsmFI GGGAC 2 cut(s) 175, 471
BsnI GGCC 1 cut(s) 276
Bso31I GGTCTC 1 cut(s) 535
Bsp1286I GDGCHC 1 cut(s) 338
Bsp143I GATC 6 cut(s) 43, 166, 244, 364, 438, 489
BspACI CCGC 2 cut(s) 171, 299
BspANI GGCC 1 cut(s) 276
BspCNI CTCAG 1 cut(s) 83
BspFNI CGCG 1 cut(s) 171
BspLI GGNNCC 2 cut(s) 175, 394
BspMAI CTGCAG 1 cut(s) 497
BspMI ACCTGC 1 cut(s) 185
BspPI GGATC 3 cut(s) 38, 372, 446
BspT107I GGYRCC 1 cut(s) 173
BspTNI GGTCTC 1 cut(s) 535
BsrI ACTGG 2 cut(s) 163, 440
BssMI GATC 6 cut(s) 43, 166, 244, 364, 438, 489
BssSI CACGAG 1 cut(s) 331
Bst2BI CACGAG 1 cut(s) 331
Bst4CI ACNGT 2 cut(s) 211, 538
BstBAI YACGTR 1 cut(s) 319
BstDEI CTNAG 1 cut(s) 70
BstFNI CGCG 1 cut(s) 171
BstHHI GCGC 1 cut(s) 350
BstKTI GATC 6 cut(s) 46, 169, 247, 367, 441, 492
BstMAI GTCTC 3 cut(s) 217, 334, 535
BstMBI GATC 6 cut(s) 43, 166, 244, 364, 438, 489
BstMWI GCNNNNNNNGC 2 cut(s) 119, 177
BstSFI CTRYAG 2 cut(s) 76, 493
BstSLI GKGCMC 1 cut(s) 338
BstUI CGCG 1 cut(s) 171
BstV1I GCAGC 2 cut(s) 241, 529
BstX2I RGATCY 1 cut(s) 489
BstYI RGATCY 1 cut(s) 489
BsuRI GGCC 1 cut(s) 276
BtsI GCAGTG 1 cut(s) 44
BtsIMutI CAGTG 3 cut(s) 44, 156, 229
BveI ACCTGC 1 cut(s) 185
CfoI GCGC 1 cut(s) 350
Cfr13I GGNCC 2 cut(s) 265, 275
Csp6I GTAC 2 cut(s) 109, 174
CviAII CATG 4 cut(s) 63, 307, 453, 555
CviJI RGCY 6 cut(s) 24, 75, 122, 276, 393, 430
CviKI_1 RGCY 6 cut(s) 24, 75, 122, 276, 393, 430
CviQI GTAC 2 cut(s) 109, 174
DdeI CTNAG 1 cut(s) 70
DpnI GATC 6 cut(s) 45, 168, 246, 366, 440, 491
DpnII GATC 6 cut(s) 43, 166, 244, 364, 438, 489
DraIII CACNNNGTG 1 cut(s) 373
Eco31I GGTCTC 1 cut(s) 535
Eco47I GGWCC 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 205
EcoRI GAATTC 1 cut(s) 448
FaeI CATG 4 cut(s) 66, 310, 456, 558
FaqI GGGAC 2 cut(s) 175, 471
FatI CATG 4 cut(s) 62, 306, 452, 554
Fnu4HI GCNGC 2 cut(s) 255, 543
Fsp4HI GCNGC 2 cut(s) 255, 543
FspI TGCGCA 1 cut(s) 349
GlaI GCGC 1 cut(s) 349
GluI GCNGC 2 cut(s) 255, 543
GsaI CCCAGC 1 cut(s) 126
HaeIII GGCC 1 cut(s) 276
HhaI GCGC 1 cut(s) 350
Hin1II CATG 4 cut(s) 66, 310, 456, 558
Hin6I GCGC 1 cut(s) 348
HinP1I GCGC 1 cut(s) 348
HinfI GANTC 2 cut(s) 68, 327
Hpy166II GTNNAC 2 cut(s) 86, 268
Hpy188I TCNGA 1 cut(s) 411
Hpy188III TCNNGA 2 cut(s) 47, 362
Hpy8I GTNNAC 2 cut(s) 86, 268
HpyAV CCTTC 2 cut(s) 136, 470
HpyCH4III ACNGT 2 cut(s) 211, 538
HpyCH4IV ACGT 1 cut(s) 318
HpyCH4V TGCA 7 cut(s) 37, 180, 257, 284, 310, 495, 550
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 177
HpyF3I CTNAG 1 cut(s) 70
HpySE526I ACGT 1 cut(s) 318
Hsp92II CATG 4 cut(s) 66, 310, 456, 558
HspAI GCGC 1 cut(s) 348
KpnI GGTACC 1 cut(s) 177
Kzo9I GATC 6 cut(s) 43, 166, 244, 364, 438, 489
LmnI GCTCC 3 cut(s) 133, 398, 412
Lsp1109I GCAGC 2 cut(s) 241, 529
LweI GCATC 1 cut(s) 300
MaeII ACGT 1 cut(s) 318
MaeIII GTNAC 2 cut(s) 65, 386
MalI GATC 6 cut(s) 45, 168, 246, 366, 440, 491
MboI GATC 6 cut(s) 43, 166, 244, 364, 438, 489
MboII GAAGA 2 cut(s) 62, 254
MfeI CAATTG 1 cut(s) 285
MflI RGATCY 1 cut(s) 489
MhlI GDGCHC 1 cut(s) 338
MluCI AATT 5 cut(s) 182, 249, 259, 285, 448
MlyI GAGTC 2 cut(s) 62, 336
MmeI TCCRAC 1 cut(s) 240
MnlI CCTC 3 cut(s) 288, 406, 466
MunI CAATTG 1 cut(s) 285
MvnI CGCG 1 cut(s) 171
MwoI GCNNNNNNNGC 2 cut(s) 119, 177
NdeII GATC 6 cut(s) 43, 166, 244, 364, 438, 489
NlaIII CATG 4 cut(s) 66, 310, 456, 558
NlaIV GGNNCC 2 cut(s) 175, 394
NmuCI GTSAC 1 cut(s) 65
NsbI TGCGCA 1 cut(s) 349
PkrI GCNGC 2 cut(s) 256, 544
PleI GAGTC 2 cut(s) 62, 335
PpsI GAGTC 2 cut(s) 62, 335
Ppu21I YACGTR 1 cut(s) 319
PsiI TTATAA 1 cut(s) 15
PspFI CCCAGC 1 cut(s) 122
PspN4I GGNNCC 2 cut(s) 175, 394
PspPI GGNCC 2 cut(s) 265, 275
PstI CTGCAG 1 cut(s) 497
PsuI RGATCY 1 cut(s) 489
RsaI GTAC 2 cut(s) 110, 175
RsaNI GTAC 2 cut(s) 109, 174
SatI GCNGC 2 cut(s) 255, 543
Sau3AI GATC 6 cut(s) 43, 166, 244, 364, 438, 489
Sau96I GGNCC 2 cut(s) 265, 275
SchI GAGTC 2 cut(s) 62, 336
SduI GDGCHC 1 cut(s) 338
SetI ASST 3 cut(s) 179, 321, 481
SfaNI GCATC 1 cut(s) 300
SfcI CTRYAG 2 cut(s) 76, 493
SinI GGWCC 1 cut(s) 265
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 5 cut(s) 182, 249, 259, 285, 448
SsiI CCGC 2 cut(s) 171, 299
TaaI ACNGT 2 cut(s) 211, 538
TaiI ACGT 1 cut(s) 321
TasI AATT 5 cut(s) 182, 249, 259, 285, 448
TscAI CASTG 3 cut(s) 44, 163, 229
TseFI GTSAC 1 cut(s) 65
TseI GCWGC 2 cut(s) 254, 542
Tsp45I GTSAC 1 cut(s) 65
TspDTI ATGAA 3 cut(s) 51, 295, 441
TspRI CASTG 3 cut(s) 44, 163, 229
VpaK11BI GGWCC 1 cut(s) 265
XapI RAATTY 3 cut(s) 182, 259, 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.