Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035218.1

Orthogroup ID

OG0021285

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 770

Gene Structure 770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035218.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

tgtgatccagaagaatatggttcatgtgactcaggctgtagtggtggactgatgaccaatgcctttgagtacgcactcaaggctgggggtttggagcaagagaaggactacccttacactgggactgatcgcggtacctgcaaatttgacaagagcaaagttgttgctactgtctccaacttcagtgttgtttcccttgacgaagatcaaattgctgcaaatttggtccacaatggccctcttgcaattggcatcaatgcggtgttcatgcaaacatacgtggggggagtctcgtgcccttacatctgcgcaaaacatcgtctggatcacggggtgcttctggtgggttatggctcctctgggtttgctccgatacgcttcaaggagaagccttactggatcataaagaattcatggggacagagttggggagaggaagggtattacaagatctgcaggggtcataatgtttgtggggtggatagtatggtctctaccgttgctgctatgcacacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04142 ko04210 map04142 map04210

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

172

Amino Acids

18.61

Weight (kDa)

5.69

Isoelectric Point (pI)

26.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021285)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g01610
rosa_multiflora	Rmu_co8479711.1_g000001 Rmu_sc0035218.1_g000001
rosa_samantha	Rh6AG424000 Rh6CG437000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	310
Acc36I	ACCTGC	1 cut(s)	146
Acc65I	GGTACC	1 cut(s)	134
AccB1I	GGYRCC	1 cut(s)	134
AccII	CGCG	1 cut(s)	132
AciI	CCGC	2 cut(s)	132, 260
AclWI	GGATC	2 cut(s)	333, 407
AcsI	RAATTY	3 cut(s)	143, 220, 409
AcuI	CTGAAG	1 cut(s)	166
AdeI	CACNNNGTG	1 cut(s)	334
AfaI	GTAC	2 cut(s)	71, 136
AfiI	CCNNNNNNNGG	1 cut(s)	119
AgsI	TTSAA	1 cut(s)	382
Alw26I	GTCTC	3 cut(s)	178, 295, 496
AlwI	GGATC	2 cut(s)	333, 407
AoxI	GGCC	1 cut(s)	235
ApeKI	GCWGC	2 cut(s)	215, 503
ApoI	RAATTY	3 cut(s)	143, 220, 409
Asp718I	GGTACC	1 cut(s)	134
AspLEI	GCGC	1 cut(s)	311
AspS9I	GGNCC	2 cut(s)	226, 236
AvaII	GGWCC	1 cut(s)	226
BaeGI	GKGCMC	1 cut(s)	299
BanI	GGYRCC	1 cut(s)	134
BauI	CACGAG	1 cut(s)	292
BbvI	GCAGC	2 cut(s)	202, 490
BcoDI	GTCTC	3 cut(s)	178, 295, 496
BfmI	CTRYAG	2 cut(s)	37, 454
BfuAI	ACCTGC	1 cut(s)	146
BglII	AGATCT	1 cut(s)	450
BisI	GCNGC	2 cut(s)	216, 504
BlsI	GCNGC	2 cut(s)	217, 505
Bme18I	GGWCC	1 cut(s)	226
BmgT120I	GGNCC	2 cut(s)	226, 236
BmiI	GGNNCC	2 cut(s)	136, 355
BmrI	ACTGGG	1 cut(s)	129
BmsI	GCATC	1 cut(s)	261
BmuI	ACTGGG	1 cut(s)	129
BpuEI	CTTGAG	1 cut(s)	62
BsaAI	YACGTR	1 cut(s)	280
BsaI	GGTCTC	1 cut(s)	496
Bsc4I	CCNNNNNNNGG	1 cut(s)	119
Bse1I	ACTGG	2 cut(s)	124, 401
BseLI	CCNNNNNNNGG	1 cut(s)	119
BseMII	CTCAG	1 cut(s)	45
BseNI	ACTGG	2 cut(s)	124, 401
BseRI	GAGGAG	1 cut(s)	346
BseSI	GKGCMC	1 cut(s)	299
BseXI	GCAGC	2 cut(s)	202, 490
BseYI	CCCAGC	1 cut(s)	83
Bsh1236I	CGCG	1 cut(s)	132
BshFI	GGCC	1 cut(s)	237
BshNI	GGYRCC	1 cut(s)	134
BslFI	GGGAC	2 cut(s)	136, 432
BslI	CCNNNNNNNGG	1 cut(s)	119
BsmAI	GTCTC	3 cut(s)	178, 295, 496
BsmFI	GGGAC	2 cut(s)	136, 432
BsnI	GGCC	1 cut(s)	237
Bso31I	GGTCTC	1 cut(s)	496
Bsp1286I	GDGCHC	1 cut(s)	299
Bsp143I	GATC	6 cut(s)	4, 127, 205, 325, 399, 450
BspACI	CCGC	2 cut(s)	132, 260
BspANI	GGCC	1 cut(s)	237
BspCNI	CTCAG	1 cut(s)	44
BspFNI	CGCG	1 cut(s)	132
BspLI	GGNNCC	2 cut(s)	136, 355
BspMAI	CTGCAG	1 cut(s)	458
BspMI	ACCTGC	1 cut(s)	146
BspPI	GGATC	2 cut(s)	333, 407
BspT107I	GGYRCC	1 cut(s)	134
BspTNI	GGTCTC	1 cut(s)	496
BsrI	ACTGG	2 cut(s)	124, 401
BssMI	GATC	6 cut(s)	4, 127, 205, 325, 399, 450
BssSI	CACGAG	1 cut(s)	292
Bst2BI	CACGAG	1 cut(s)	292
Bst4CI	ACNGT	2 cut(s)	172, 499
BstBAI	YACGTR	1 cut(s)	280
BstDEI	CTNAG	1 cut(s)	31
BstFNI	CGCG	1 cut(s)	132
BstHHI	GCGC	1 cut(s)	311
BstKTI	GATC	6 cut(s)	7, 130, 208, 328, 402, 453
BstMAI	GTCTC	3 cut(s)	178, 295, 496
BstMBI	GATC	6 cut(s)	4, 127, 205, 325, 399, 450
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 138
BstSFI	CTRYAG	2 cut(s)	37, 454
BstSLI	GKGCMC	1 cut(s)	299
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	2 cut(s)	202, 490
BstX2I	RGATCY	1 cut(s)	450
BstYI	RGATCY	1 cut(s)	450
BsuRI	GGCC	1 cut(s)	237
BtsIMutI	CAGTG	2 cut(s)	117, 190
BveI	ACCTGC	1 cut(s)	146
CfoI	GCGC	1 cut(s)	311
Cfr13I	GGNCC	2 cut(s)	226, 236
Csp6I	GTAC	2 cut(s)	70, 135
CviAII	CATG	4 cut(s)	24, 268, 414, 516
CviJI	RGCY	5 cut(s)	36, 83, 237, 354, 391
CviKI_1	RGCY	5 cut(s)	36, 83, 237, 354, 391
CviQI	GTAC	2 cut(s)	70, 135
DdeI	CTNAG	1 cut(s)	31
DpnI	GATC	6 cut(s)	6, 129, 207, 327, 401, 452
DpnII	GATC	6 cut(s)	4, 127, 205, 325, 399, 450
DraIII	CACNNNGTG	1 cut(s)	334
Eco31I	GGTCTC	1 cut(s)	496
Eco47I	GGWCC	1 cut(s)	226
Eco57I	CTGAAG	1 cut(s)	166
EcoRI	GAATTC	1 cut(s)	409
FaeI	CATG	4 cut(s)	27, 271, 417, 519
FaqI	GGGAC	2 cut(s)	136, 432
FatI	CATG	4 cut(s)	23, 267, 413, 515
Fnu4HI	GCNGC	2 cut(s)	216, 504
Fsp4HI	GCNGC	2 cut(s)	216, 504
FspI	TGCGCA	1 cut(s)	310
GlaI	GCGC	1 cut(s)	310
GluI	GCNGC	2 cut(s)	216, 504
GsaI	CCCAGC	1 cut(s)	87
HaeIII	GGCC	1 cut(s)	237
HhaI	GCGC	1 cut(s)	311
Hin1II	CATG	4 cut(s)	27, 271, 417, 519
Hin6I	GCGC	1 cut(s)	309
HinP1I	GCGC	1 cut(s)	309
HinfI	GANTC	2 cut(s)	29, 288
Hpy166II	GTNNAC	2 cut(s)	47, 229
Hpy188I	TCNGA	1 cut(s)	372
Hpy188III	TCNNGA	2 cut(s)	8, 323
Hpy8I	GTNNAC	2 cut(s)	47, 229
HpyAV	CCTTC	2 cut(s)	97, 431
HpyCH4III	ACNGT	2 cut(s)	172, 499
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	6 cut(s)	141, 218, 245, 271, 456, 511
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 138
HpyF3I	CTNAG	1 cut(s)	31
HpySE526I	ACGT	1 cut(s)	279
Hsp92II	CATG	4 cut(s)	27, 271, 417, 519
HspAI	GCGC	1 cut(s)	309
KpnI	GGTACC	1 cut(s)	138
Kzo9I	GATC	6 cut(s)	4, 127, 205, 325, 399, 450
LmnI	GCTCC	3 cut(s)	94, 359, 373
Lsp1109I	GCAGC	2 cut(s)	202, 490
LweI	GCATC	1 cut(s)	261
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	1 cut(s)	26
MalI	GATC	6 cut(s)	6, 129, 207, 327, 401, 452
MboI	GATC	6 cut(s)	4, 127, 205, 325, 399, 450
MboII	GAAGA	2 cut(s)	23, 215
MfeI	CAATTG	1 cut(s)	246
MflI	RGATCY	1 cut(s)	450
MhlI	GDGCHC	1 cut(s)	299
MluCI	AATT	5 cut(s)	143, 210, 220, 246, 409
MlyI	GAGTC	2 cut(s)	23, 297
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	3 cut(s)	249, 367, 427
MunI	CAATTG	1 cut(s)	246
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	2 cut(s)	80, 138
NdeII	GATC	6 cut(s)	4, 127, 205, 325, 399, 450
NlaIII	CATG	4 cut(s)	27, 271, 417, 519
NlaIV	GGNNCC	2 cut(s)	136, 355
NmuCI	GTSAC	1 cut(s)	26
NsbI	TGCGCA	1 cut(s)	310
PkrI	GCNGC	2 cut(s)	217, 505
PleI	GAGTC	2 cut(s)	23, 296
PpsI	GAGTC	2 cut(s)	23, 296
Ppu21I	YACGTR	1 cut(s)	280
PspFI	CCCAGC	1 cut(s)	83
PspN4I	GGNNCC	2 cut(s)	136, 355
PspPI	GGNCC	2 cut(s)	226, 236
PstI	CTGCAG	1 cut(s)	458
PsuI	RGATCY	1 cut(s)	450
RsaI	GTAC	2 cut(s)	71, 136
RsaNI	GTAC	2 cut(s)	70, 135
SatI	GCNGC	2 cut(s)	216, 504
Sau3AI	GATC	6 cut(s)	4, 127, 205, 325, 399, 450
Sau96I	GGNCC	2 cut(s)	226, 236
SchI	GAGTC	2 cut(s)	23, 297
SduI	GDGCHC	1 cut(s)	299
SetI	ASST	2 cut(s)	140, 282
SfaNI	GCATC	1 cut(s)	261
SfcI	CTRYAG	2 cut(s)	37, 454
SinI	GGWCC	1 cut(s)	226
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
Sse9I	AATT	5 cut(s)	143, 210, 220, 246, 409
SsiI	CCGC	2 cut(s)	132, 260
TaaI	ACNGT	2 cut(s)	172, 499
TaiI	ACGT	1 cut(s)	282
TasI	AATT	5 cut(s)	143, 210, 220, 246, 409
TscAI	CASTG	2 cut(s)	124, 190
TseFI	GTSAC	1 cut(s)	26
TseI	GCWGC	2 cut(s)	215, 503
Tsp45I	GTSAC	1 cut(s)	26
TspDTI	ATGAA	3 cut(s)	12, 256, 402
TspRI	CASTG	2 cut(s)	124, 190
VpaK11BI	GGWCC	1 cut(s)	226
XapI	RAATTY	3 cut(s)	143, 220, 409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.