Rh6CG437000

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0021285
Physical Location & Seq
Forward (+)
61635233 .. 61635796
564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG437000.1

Sequence Viewer

Length: 564 bp
ATGATGGCATGGCATTGTCTTATAATGAGCCTGTACATTTTGCAGTGTGATCCAGAAGAATATGGTTCATGTGACTCAGGCTGTAGTGGTGGACTGATGACCAATGCCTTTGAGTACGCACTCAAGGCTGGGGGTTTGGAGCAAGAGAAGGACTACCCTTACACTGGGACTGATCGCGGTACCTGCAAATTTGACAAGAGCAAAGTTGTTGCTACTGTCTCCAACTTCAGTGTTGTTTCCCTTGACGAAGATCAAATTGCTGCAAATTTGGTCCACAATGGCCCTCTTGCAATTGGCATCAATGCGGTGTTCATGCAAACATACGTGGGGGGAGTCTCGTGCCCTTACATCTGCGCAAAACATCGTCTGGATCACGGGGTGCTTCTGGTGGGTTACGGCTCCTCTGGGTTTGCTCCGATACGCTTCAAGGAGAAGCCTTACTGGATCATAAAGAATTCATGGGGACAGAGTTGGGGAGAGGAAGGGTATTACAAGATCTGCAGGGGTCATAATGTTTGTGGGGTGGATAGCATGGTCTCTACCGTTGCTGCTATGCACACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04210 map04142 map04210
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

187

Amino Acids

20.45

Weight (kDa)

5.82

Isoelectric Point (pI)

32.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C1 PF00112 13 - 181 3.3e-48 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021285)

Species Orthologous Gene IDs
pyrus_communis pycom15g01610
rosa_multiflora Rmu_co8479711.1_g000001 Rmu_sc0035218.1_g000001
rosa_samantha Rh6AG424000 Rh6CG437000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 23
Acc16I TGCGCA 1 cut(s) 355
Acc36I ACCTGC 1 cut(s) 191
Acc65I GGTACC 1 cut(s) 179
AccB1I GGYRCC 1 cut(s) 179
AccII CGCG 1 cut(s) 177
AciI CCGC 2 cut(s) 177, 305
AclWI GGATC 3 cut(s) 44, 378, 452
AcsI RAATTY 3 cut(s) 188, 265, 454
AcuI CTGAAG 1 cut(s) 211
AdeI CACNNNGTG 1 cut(s) 379
AfaI GTAC 3 cut(s) 35, 116, 181
AfiI CCNNNNNNNGG 1 cut(s) 164
AgsI TTSAA 1 cut(s) 427
Alw26I GTCTC 3 cut(s) 223, 340, 541
AlwI GGATC 3 cut(s) 44, 378, 452
AoxI GGCC 1 cut(s) 280
ApeKI GCWGC 2 cut(s) 260, 548
ApoI RAATTY 3 cut(s) 188, 265, 454
Asp718I GGTACC 1 cut(s) 179
AspLEI GCGC 1 cut(s) 356
AspS9I GGNCC 2 cut(s) 271, 281
AvaII GGWCC 1 cut(s) 271
BaeGI GKGCMC 1 cut(s) 344
BanI GGYRCC 1 cut(s) 179
BauI CACGAG 1 cut(s) 337
BbvI GCAGC 2 cut(s) 247, 535
BceAI ACGGC 1 cut(s) 412
BcoDI GTCTC 3 cut(s) 223, 340, 541
BfmI CTRYAG 2 cut(s) 82, 499
BfuAI ACCTGC 1 cut(s) 191
BglII AGATCT 1 cut(s) 495
BisI GCNGC 2 cut(s) 261, 549
BlsI GCNGC 2 cut(s) 262, 550
Bme18I GGWCC 1 cut(s) 271
BmgT120I GGNCC 2 cut(s) 271, 281
BmiI GGNNCC 2 cut(s) 181, 400
BmrI ACTGGG 1 cut(s) 174
BmsI GCATC 1 cut(s) 306
BmuI ACTGGG 1 cut(s) 174
BpuEI CTTGAG 1 cut(s) 107
BsaAI YACGTR 1 cut(s) 325
BsaI GGTCTC 1 cut(s) 541
Bsc4I CCNNNNNNNGG 1 cut(s) 164
Bse1I ACTGG 2 cut(s) 169, 446
BseLI CCNNNNNNNGG 1 cut(s) 164
BseMII CTCAG 1 cut(s) 90
BseNI ACTGG 2 cut(s) 169, 446
BseRI GAGGAG 1 cut(s) 391
BseSI GKGCMC 1 cut(s) 344
BseXI GCAGC 2 cut(s) 247, 535
BseYI CCCAGC 1 cut(s) 128
Bsh1236I CGCG 1 cut(s) 177
BshFI GGCC 1 cut(s) 282
BshNI GGYRCC 1 cut(s) 179
BslFI GGGAC 2 cut(s) 181, 477
BslI CCNNNNNNNGG 1 cut(s) 164
BsmAI GTCTC 3 cut(s) 223, 340, 541
BsmFI GGGAC 2 cut(s) 181, 477
BsnI GGCC 1 cut(s) 282
Bso31I GGTCTC 1 cut(s) 541
Bsp1286I GDGCHC 1 cut(s) 344
Bsp1407I TGTACA 1 cut(s) 33
Bsp143I GATC 6 cut(s) 49, 172, 250, 370, 444, 495
BspACI CCGC 2 cut(s) 177, 305
BspANI GGCC 1 cut(s) 282
BspCNI CTCAG 1 cut(s) 89
BspFNI CGCG 1 cut(s) 177
BspLI GGNNCC 2 cut(s) 181, 400
BspMAI CTGCAG 1 cut(s) 503
BspMI ACCTGC 1 cut(s) 191
BspPI GGATC 3 cut(s) 44, 378, 452
BspT107I GGYRCC 1 cut(s) 179
BspTNI GGTCTC 1 cut(s) 541
BsrGI TGTACA 1 cut(s) 33
BsrI ACTGG 2 cut(s) 169, 446
BssMI GATC 6 cut(s) 49, 172, 250, 370, 444, 495
BssSI CACGAG 1 cut(s) 337
Bst2BI CACGAG 1 cut(s) 337
Bst4CI ACNGT 2 cut(s) 217, 544
BstAUI TGTACA 1 cut(s) 33
BstBAI YACGTR 1 cut(s) 325
BstDEI CTNAG 1 cut(s) 76
BstFNI CGCG 1 cut(s) 177
BstHHI GCGC 1 cut(s) 356
BstKTI GATC 6 cut(s) 52, 175, 253, 373, 447, 498
BstMAI GTCTC 3 cut(s) 223, 340, 541
BstMBI GATC 6 cut(s) 49, 172, 250, 370, 444, 495
BstMWI GCNNNNNNNGC 2 cut(s) 125, 183
BstSFI CTRYAG 2 cut(s) 82, 499
BstSLI GKGCMC 1 cut(s) 344
BstUI CGCG 1 cut(s) 177
BstV1I GCAGC 2 cut(s) 247, 535
BstX2I RGATCY 1 cut(s) 495
BstYI RGATCY 1 cut(s) 495
BsuRI GGCC 1 cut(s) 282
BtsI GCAGTG 1 cut(s) 50
BtsIMutI CAGTG 3 cut(s) 50, 162, 235
BveI ACCTGC 1 cut(s) 191
CfoI GCGC 1 cut(s) 356
Cfr13I GGNCC 2 cut(s) 271, 281
Csp6I GTAC 3 cut(s) 34, 115, 180
CviAII CATG 6 cut(s) 9, 69, 313, 459, 532, 561
CviJI RGCY 6 cut(s) 30, 81, 128, 282, 399, 436
CviKI_1 RGCY 6 cut(s) 30, 81, 128, 282, 399, 436
CviQI GTAC 3 cut(s) 34, 115, 180
DdeI CTNAG 1 cut(s) 76
DpnI GATC 6 cut(s) 51, 174, 252, 372, 446, 497
DpnII GATC 6 cut(s) 49, 172, 250, 370, 444, 495
DraIII CACNNNGTG 1 cut(s) 379
Eco31I GGTCTC 1 cut(s) 541
Eco47I GGWCC 1 cut(s) 271
Eco57I CTGAAG 1 cut(s) 211
EcoRI GAATTC 1 cut(s) 454
FaeI CATG 6 cut(s) 12, 72, 316, 462, 535, 564
FaqI GGGAC 2 cut(s) 181, 477
FatI CATG 6 cut(s) 8, 68, 312, 458, 531, 560
Fnu4HI GCNGC 2 cut(s) 261, 549
Fsp4HI GCNGC 2 cut(s) 261, 549
FspI TGCGCA 1 cut(s) 355
GlaI GCGC 1 cut(s) 355
GluI GCNGC 2 cut(s) 261, 549
GsaI CCCAGC 1 cut(s) 132
HaeIII GGCC 1 cut(s) 282
HhaI GCGC 1 cut(s) 356
Hin1II CATG 6 cut(s) 12, 72, 316, 462, 535, 564
Hin6I GCGC 1 cut(s) 354
HinP1I GCGC 1 cut(s) 354
HinfI GANTC 2 cut(s) 74, 333
Hpy166II GTNNAC 2 cut(s) 92, 274
Hpy188I TCNGA 1 cut(s) 417
Hpy188III TCNNGA 2 cut(s) 53, 368
Hpy8I GTNNAC 2 cut(s) 92, 274
HpyAV CCTTC 2 cut(s) 142, 476
HpyCH4III ACNGT 2 cut(s) 217, 544
HpyCH4IV ACGT 1 cut(s) 324
HpyCH4V TGCA 7 cut(s) 43, 186, 263, 290, 316, 501, 556
HpyF10VI GCNNNNNNNGC 2 cut(s) 125, 183
HpyF3I CTNAG 1 cut(s) 76
HpySE526I ACGT 1 cut(s) 324
Hsp92II CATG 6 cut(s) 12, 72, 316, 462, 535, 564
HspAI GCGC 1 cut(s) 354
KpnI GGTACC 1 cut(s) 183
Kzo9I GATC 6 cut(s) 49, 172, 250, 370, 444, 495
LmnI GCTCC 3 cut(s) 139, 404, 418
Lsp1109I GCAGC 2 cut(s) 247, 535
LweI GCATC 1 cut(s) 306
MaeII ACGT 1 cut(s) 324
MaeIII GTNAC 2 cut(s) 71, 392
MalI GATC 6 cut(s) 51, 174, 252, 372, 446, 497
MboI GATC 6 cut(s) 49, 172, 250, 370, 444, 495
MboII GAAGA 2 cut(s) 68, 260
MfeI CAATTG 1 cut(s) 291
MflI RGATCY 1 cut(s) 495
MhlI GDGCHC 1 cut(s) 344
MluCI AATT 5 cut(s) 188, 255, 265, 291, 454
MlyI GAGTC 2 cut(s) 68, 342
MmeI TCCRAC 1 cut(s) 246
MnlI CCTC 3 cut(s) 294, 412, 472
MunI CAATTG 1 cut(s) 291
MvnI CGCG 1 cut(s) 177
MwoI GCNNNNNNNGC 2 cut(s) 125, 183
NdeII GATC 6 cut(s) 49, 172, 250, 370, 444, 495
NlaIII CATG 6 cut(s) 12, 72, 316, 462, 535, 564
NlaIV GGNNCC 2 cut(s) 181, 400
NmuCI GTSAC 1 cut(s) 71
NsbI TGCGCA 1 cut(s) 355
PkrI GCNGC 2 cut(s) 262, 550
PleI GAGTC 2 cut(s) 68, 341
PpsI GAGTC 2 cut(s) 68, 341
Ppu21I YACGTR 1 cut(s) 325
PsiI TTATAA 1 cut(s) 23
PspFI CCCAGC 1 cut(s) 128
PspN4I GGNNCC 2 cut(s) 181, 400
PspPI GGNCC 2 cut(s) 271, 281
PstI CTGCAG 1 cut(s) 503
PsuI RGATCY 1 cut(s) 495
RsaI GTAC 3 cut(s) 35, 116, 181
RsaNI GTAC 3 cut(s) 34, 115, 180
SatI GCNGC 2 cut(s) 261, 549
Sau3AI GATC 6 cut(s) 49, 172, 250, 370, 444, 495
Sau96I GGNCC 2 cut(s) 271, 281
SchI GAGTC 2 cut(s) 68, 342
SduI GDGCHC 1 cut(s) 344
SetI ASST 2 cut(s) 185, 327
SfaNI GCATC 1 cut(s) 306
SfcI CTRYAG 2 cut(s) 82, 499
SinI GGWCC 1 cut(s) 271
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 5 cut(s) 188, 255, 265, 291, 454
SsiI CCGC 2 cut(s) 177, 305
TaaI ACNGT 2 cut(s) 217, 544
TaiI ACGT 1 cut(s) 327
TasI AATT 5 cut(s) 188, 255, 265, 291, 454
TatI WGTACW 1 cut(s) 33
TscAI CASTG 3 cut(s) 50, 169, 235
TseFI GTSAC 1 cut(s) 71
TseI GCWGC 2 cut(s) 260, 548
Tsp45I GTSAC 1 cut(s) 71
TspDTI ATGAA 3 cut(s) 57, 301, 447
TspRI CASTG 3 cut(s) 50, 169, 235
VpaK11BI GGWCC 1 cut(s) 271
XapI RAATTY 3 cut(s) 188, 265, 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.