Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007720

Physical Location & Seq

Genomic Coordinates Reverse (-)

1138906 .. 1139412

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGAGGTCGTTTTGGAGAAGAAAGACGCTGCTGAATGGGCTTACAGAGGCGAAGGGGCTGCTAATCTTGTTCTCGCTTACACCGGATCCTCCCCCACTTTTGAAGCTCGAATTAATGGATCAAAGGCCTCGAACAGTCCCACGGCATTAACCGCCCACGAACTTCTTTTGTGGAAAGACATGGATGACATTGTAGCTACTTCTAACAAAGAACTTGCCAGCCAACTCTATGTGAAGCACATCATGAGCCCTTTATTGGGTTCTGCGTACGTTGATGCTGGGGTATGTGAAAATCTGAGTTTATACATGTACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0006873 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009620 GO:0009791 GO:0009987 GO:0010264 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019637 GO:0019725 GO:0019751 GO:0022622 GO:0030002 GO:0030320 GO:0030643 GO:0032501 GO:0032502 GO:0032942 GO:0032958 GO:0033517 GO:0035299 GO:0040007 GO:0042592 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046165 GO:0046173 GO:0046835 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050832 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051765 GO:0052746 GO:0055062 GO:0055081 GO:0055082 GO:0055083 GO:0065007 GO:0065008 GO:0071704 GO:0072501 GO:0072502 GO:0072505 GO:0072506 GO:0090407 GO:0090696 GO:0098542 GO:0098771 GO:0099402 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

HMA Ins_P5_2-kin

Protein Analysis

106

Amino Acids

11.44

Weight (kDa)

5.02

Isoelectric Point (pI)

33.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ins_P5_2-kin	PF06090	15 - 100	1.4e-11	Inositol-pentakisphosphate 2-kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22100 AT1G58643 AT1G58643 AT1G58936 AT1G59312 AT1G59312 AT5G42810
fragaria_vesca	FvH4_2g39440
malus_domestica	MD08G1026900.v1.1 MD15G1023500.v1.1
prunus_persica	Prupe.1G375600_v2.0.a1 Prupe.1G549800_v2.0.a1
pyrus_communis	pycom08g02100 pycom15g01950
rosa_chinensis	RchiOBHm_Chr6g0301531
rosa_laevigata	RLG00000011246
rosa_multiflora	Rmu_ssc0000452.1_g000003
rosa_roxburghii	Rroxscaffold_7G00166680
rosa_rugosa	Rorug06G0305800
rosa_samantha	Rh6AG419500 Rh6BG425500 Rh6CG432600 Rh6DG418800
rosa_wichuraiana	Rw6G036270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	153
AclWI	GGATC	3 cut(s)	81, 94, 127
AfaI	GTAC	2 cut(s)	269, 311
AfiI	CCNNNNNNNGG	2 cut(s)	256, 257
AflIII	ACRYGT	1 cut(s)	306
AgsI	TTSAA	1 cut(s)	104
AluBI	AGCT	2 cut(s)	107, 197
AluI	AGCT	2 cut(s)	107, 197
AlwI	GGATC	3 cut(s)	81, 94, 127
AoxI	GGCC	1 cut(s)	126
ApeKI	GCWGC	2 cut(s)	29, 59
AseI	ATTAAT	1 cut(s)	114
BamHI	GGATCC	1 cut(s)	86
BanII	GRGCYC	1 cut(s)	251
BbvI	GCAGC	2 cut(s)	16, 46
BceAI	ACGGC	1 cut(s)	159
BcgI	CGANNNNNNTGC	2 cut(s)	41, 75
BisI	GCNGC	2 cut(s)	30, 60
BlsI	GCNGC	2 cut(s)	31, 61
BmiI	GGNNCC	1 cut(s)	88
BmsI	GCATC	1 cut(s)	265
BsaJI	CCNNGG	1 cut(s)	141
BsaWI	WCCGGW	1 cut(s)	83
Bsc4I	CCNNNNNNNGG	2 cut(s)	256, 257
BseDI	CCNNGG	1 cut(s)	141
BseGI	GGATG	1 cut(s)	190
BseLI	CCNNNNNNNGG	2 cut(s)	256, 257
BseMII	CTCAG	1 cut(s)	287
BseXI	GCAGC	2 cut(s)	16, 46
BseYI	CCCAGC	1 cut(s)	278
BshFI	GGCC	1 cut(s)	128
BsiSI	CCGG	1 cut(s)	84
BsiWI	CGTACG	1 cut(s)	267
BslFI	GGGAC	1 cut(s)	123
BslI	CCNNNNNNNGG	2 cut(s)	256, 257
BsmFI	GGGAC	1 cut(s)	123
BsnI	GGCC	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	251
Bsp1407I	TGTACA	1 cut(s)	309
Bsp143I	GATC	2 cut(s)	86, 119
BspACI	CCGC	1 cut(s)	153
BspANI	GGCC	1 cut(s)	128
BspCNI	CTCAG	1 cut(s)	288
BspHI	TCATGA	1 cut(s)	243
BspLI	GGNNCC	1 cut(s)	88
BspPI	GGATC	3 cut(s)	81, 94, 127
BsrGI	TGTACA	1 cut(s)	309
BssECI	CCNNGG	1 cut(s)	141
BssMI	GATC	2 cut(s)	86, 119
Bst4CI	ACNGT	1 cut(s)	137
BstAUI	TGTACA	1 cut(s)	309
BstC8I	GCNNGC	1 cut(s)	220
BstDEI	CTNAG	1 cut(s)	296
BstDSI	CCRYGG	1 cut(s)	141
BstF5I	GGATG	1 cut(s)	190
BstKTI	GATC	2 cut(s)	89, 122
BstMBI	GATC	2 cut(s)	86, 119
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 152
BstNSI	RCATGY	1 cut(s)	310
BstV1I	GCAGC	2 cut(s)	16, 46
BstX2I	RGATCY	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	86
BsuRI	GGCC	1 cut(s)	128
BtgI	CCRYGG	1 cut(s)	141
BtsCI	GGATG	1 cut(s)	190
Cac8I	GCNNGC	1 cut(s)	220
CciI	TCATGA	1 cut(s)	243
CseI	GACGC	1 cut(s)	35
Csp6I	GTAC	2 cut(s)	268, 310
CviAII	CATG	3 cut(s)	181, 244, 307
CviJI	RGCY	7 cut(s)	41, 59, 107, 128, 197, 222, 249
CviKI_1	RGCY	7 cut(s)	41, 59, 107, 128, 197, 222, 249
CviQI	GTAC	2 cut(s)	268, 310
DdeI	CTNAG	1 cut(s)	296
DpnI	GATC	2 cut(s)	88, 121
DpnII	GATC	2 cut(s)	86, 119
Eco147I	AGGCCT	1 cut(s)	128
Eco24I	GRGCYC	1 cut(s)	251
EcoT38I	GRGCYC	1 cut(s)	251
FaeI	CATG	3 cut(s)	184, 247, 310
FaiI	YATR	6 cut(s)	182, 231, 245, 286, 304, 308
FaqI	GGGAC	1 cut(s)	123
FatI	CATG	3 cut(s)	180, 243, 306
Fnu4HI	GCNGC	2 cut(s)	30, 60
FokI	GGATG	1 cut(s)	197
FriOI	GRGCYC	1 cut(s)	251
Fsp4HI	GCNGC	2 cut(s)	30, 60
GluI	GCNGC	2 cut(s)	30, 60
GsaI	CCCAGC	1 cut(s)	282
HaeIII	GGCC	1 cut(s)	128
HapII	CCGG	1 cut(s)	84
HgaI	GACGC	1 cut(s)	35
Hin1II	CATG	3 cut(s)	184, 247, 310
HpaII	CCGG	1 cut(s)	84
Hpy188I	TCNGA	1 cut(s)	297
Hpy188III	TCNNGA	1 cut(s)	244
HpyAV	CCTTC	1 cut(s)	47
HpyCH4III	ACNGT	1 cut(s)	137
HpyCH4IV	ACGT	1 cut(s)	270
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 152
HpyF3I	CTNAG	1 cut(s)	296
HpySE526I	ACGT	1 cut(s)	270
Hsp92II	CATG	3 cut(s)	184, 247, 310
Kzo9I	GATC	2 cut(s)	86, 119
LpnPI	CCDG	3 cut(s)	97, 232, 264
Lsp1109I	GCAGC	2 cut(s)	16, 46
LweI	GCATC	1 cut(s)	265
MaeII	ACGT	1 cut(s)	270
MalI	GATC	2 cut(s)	88, 121
MboI	GATC	2 cut(s)	86, 119
MboII	GAAGA	1 cut(s)	31
MflI	RGATCY	1 cut(s)	86
MhlI	GDGCHC	1 cut(s)	251
MluCI	AATT	1 cut(s)	111
MnlI	CCTC	3 cut(s)	41, 100, 139
MseI	TTAA	2 cut(s)	114, 149
MspI	CCGG	1 cut(s)	84
MwoI	GCNNNNNNNGC	2 cut(s)	38, 152
NdeII	GATC	2 cut(s)	86, 119
NlaIII	CATG	3 cut(s)	184, 247, 310
NlaIV	GGNNCC	1 cut(s)	88
NspI	RCATGY	1 cut(s)	310
PagI	TCATGA	1 cut(s)	243
PceI	AGGCCT	1 cut(s)	128
PciI	ACATGT	1 cut(s)	306
Pfl23II	CGTACG	1 cut(s)	267
PkrI	GCNGC	2 cut(s)	31, 61
PscI	ACATGT	1 cut(s)	306
PshBI	ATTAAT	1 cut(s)	114
PspFI	CCCAGC	1 cut(s)	278
PspLI	CGTACG	1 cut(s)	267
PspN4I	GGNNCC	1 cut(s)	88
PsuI	RGATCY	1 cut(s)	86
RsaI	GTAC	2 cut(s)	269, 311
RsaNI	GTAC	2 cut(s)	268, 310
SaqAI	TTAA	2 cut(s)	114, 149
SatI	GCNGC	2 cut(s)	30, 60
Sau3AI	GATC	2 cut(s)	86, 119
SduI	GDGCHC	1 cut(s)	251
SetI	ASST	4 cut(s)	9, 109, 199, 273
SfaNI	GCATC	1 cut(s)	265
Sse9I	AATT	1 cut(s)	111
SseBI	AGGCCT	1 cut(s)	128
SsiI	CCGC	1 cut(s)	153
StuI	AGGCCT	1 cut(s)	128
TaaI	ACNGT	1 cut(s)	137
TaiI	ACGT	1 cut(s)	273
TaqI	TCGA	2 cut(s)	109, 131
TasI	AATT	1 cut(s)	111
TatI	WGTACW	1 cut(s)	309
Tru1I	TTAA	2 cut(s)	114, 149
Tru9I	TTAA	2 cut(s)	114, 149
TseI	GCWGC	2 cut(s)	29, 59
VspI	ATTAAT	1 cut(s)	114
XceI	RCATGY	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.