pycom15g03000

Allene oxide synthase, chloroplastic-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
1846877 .. 1848069
1193 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1116 bp
ATGCCGCCGGGCCCCACCATCACCTACAAATCCCAGGTCGTCGCCCTCCTCGACGGCAAGAGCTTCCCGGTGCTCTTCGACGTCTCGAAAGTCGAAAAAAAGGACCTCTTTACCGGAACTTATATGCCCTCCGTGGAGCTCACCGGCGGCTACCGCATCCTTTCCTACCTCGACCCGTCGGAGCCCAAGCACGACAAGCTGAAGCGGATCCTTTTCTACCTCCTAAAGTCGAGTCGCGACTCGGTGCTACCCGAGTTTCACTCGTCCTACACGGAGCTTTTTGAAACTCTGGAGGCCAGTCTCGCCGAAAAAGGTAAAGCCAACTTCGTCGCGGCCAACGATCAGGCTGCGTTTAACTTCTTGGCCCGGTCGCTGTACGGGGCCAACCCTGCCGACACTCCACTTGGGGTCGACGGACCCAAGCTTGTATCAAAGTGGGTCCTGTTTAACTTGGCCCCACTTCTGATCCTCGGCCTCCCGAAGTTCATCGAAGAACCCATTATCCACTCTTTTCGGCTCCCGCCATTTTTGATCAAGAAGGATTACCAGCGCCTCTACGATTTCTTCTACCAGTCTTCCGGTCACGTGCTCGACGAGGCCGAGCGACTGGGTGTCTCACGTGACGAGGCGTGCCACAATCTGTTATTCGCCACGTGCTTCAATTCGTTCGGCGGGATGAAGTTCCAATTCCCCAATATGATCAAGTGGATTGGGCGCGCCGGTGTCGGGCTCCACACTCGATTGGCCGAGGAGATCCGAACCGCCGTCCGATCCAACGGCGGAAAAATTACGATGGGCGCAATGGAGCAAATGCCATTGATGAAATCTGTGGTCTACGAAACGTTCAGGATCGAGCCGCCGGTGCCGTTGCAGTTCGGAAAGGCGAAGACGGATCTCGTGATCGAGAGCCACGACGCGGCGTTTAAGGTTAAAGAAGGGGAGTTGCTGTTCGGATTCCAACCGTTCGCAACCAAAGATCCAAGGATTTTCGAGAGAGCCGATGAGTTTGTCCCTGATCGGTTCGTCGGCGAGGACGGGGAGAAGCTGTTGAAGCACGTGCTGTGGTCGAACGGTCCTGAGACGGAGAGTCCGACGGTCGGGAACAAACAGTATTGA

Protein Analysis

372

Amino Acids

41.73

Weight (kDa)

6.48

Isoelectric Point (pI)

43.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 246 - 351 8.8e-15 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014063)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42650
fragaria_vesca FvH4_2g40510
malus_domestica MD00G1038400.v1.1 MD08G1038600.v1.1
prunus_persica Prupe.1G386300_v2.0.a1
pyrus_communis pycom08g03050 pycom15g03000
rosa_chinensis RchiOBHm_Chr6g0300221
rosa_laevigata RLG00000011356
rosa_multiflora Rmu_sc0001670.1_g000032
rosa_roxburghii Rroxscaffold_7G00168000
rosa_rugosa Rorug06G0294200
rosa_samantha Rh6AG406400 Rh6BG414300 Rh6CG421500 Rh6DG407100
rosa_wichuraiana Rw6G035560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 84
AccB1I GGYRCC 1 cut(s) 862
AccI GTMKAC 2 cut(s) 411, 834
AccII CGCG 4 cut(s) 237, 332, 717, 917
AclI AACGTT 1 cut(s) 842
AclWI GGATC 8 cut(s) 202, 215, 460, 748, 765, 857, 900, 971
AcoI YGGCCR 2 cut(s) 333, 744
AcuI CTGAAG 1 cut(s) 221
AcvI CACGTG 4 cut(s) 586, 620, 654, 1057
AcyI GRCGYC 1 cut(s) 81
AfaI GTAC 1 cut(s) 377
AfiI CCNNNNNNNGG 3 cut(s) 726, 916, 1097
AgsI TTSAA 3 cut(s) 284, 661, 1051
AhdI GACNNNNNGTC 2 cut(s) 611, 1086
AjnI CCWGG 1 cut(s) 33
AloI GAACNNNNNNTCC 4 cut(s) 486, 518, 932, 964
AluBI AGCT 6 cut(s) 63, 139, 199, 277, 424, 1045
AluI AGCT 6 cut(s) 63, 139, 199, 277, 424, 1045
Alw21I GWGCWC 3 cut(s) 75, 141, 591
Alw26I GTCTC 4 cut(s) 88, 305, 619, 1073
AlwI GGATC 8 cut(s) 202, 215, 460, 748, 765, 857, 900, 971
Ama87I CYCGRG 1 cut(s) 251
AoxI GGCC 9 cut(s) 10, 294, 333, 363, 381, 453, 472, 597, 744
ApaI GGGCCC 1 cut(s) 14
ApeKI GCWGC 1 cut(s) 347
ArsI GACNNNNNNTTYG 2 cut(s) 21, 53
AscI GGCGCGCC 1 cut(s) 715
AspLEI GCGC 4 cut(s) 552, 717, 719, 800
AspS9I GGNCC 9 cut(s) 10, 11, 103, 364, 381, 416, 439, 454, 1073
AsuC2I CCSGG 3 cut(s) 9, 68, 367
AsuHPI GGTGA 2 cut(s) 13, 133
AvaI CYCGRG 1 cut(s) 251
AvaII GGWCC 4 cut(s) 103, 416, 439, 1073
BaeGI GKGCMC 1 cut(s) 14
BamHI GGATCC 1 cut(s) 207
BanI GGYRCC 1 cut(s) 862
BanII GRGCYC 4 cut(s) 14, 141, 186, 732
BauI CACGAG 1 cut(s) 896
BbrPI CACGTG 4 cut(s) 586, 620, 654, 1057
BbsI GAAGAC 2 cut(s) 567, 893
Bbv12I GWGCWC 3 cut(s) 75, 141, 591
BbvI GCAGC 1 cut(s) 334
BccI CCATC 2 cut(s) 26, 787
BceAI ACGGC 4 cut(s) 70, 749, 793, 850
BcgI CGANNNNNNTGC 2 cut(s) 329, 363
BciT130I CCWGG 1 cut(s) 35
BclI TGATCA 2 cut(s) 531, 699
BcnI CCSGG 3 cut(s) 9, 68, 367
BcoDI GTCTC 4 cut(s) 88, 305, 619, 1073
BfoI RGCGCY 1 cut(s) 553
BisI GCNGC 6 cut(s) 5, 148, 333, 348, 857, 918
BlsI GCNGC 6 cut(s) 6, 149, 334, 349, 858, 919
Bme1390I CCNGG 4 cut(s) 9, 35, 68, 367
Bme18I GGWCC 4 cut(s) 103, 416, 439, 1073
BmeRI GACNNNNNGTC 2 cut(s) 611, 1086
BmeT110I CYCGRG 1 cut(s) 251
BmgT120I GGNCC 9 cut(s) 10, 11, 103, 364, 381, 416, 439, 454, 1073
BmrFI CCNGG 4 cut(s) 9, 35, 68, 367
BmrI ACTGGG 1 cut(s) 617
BmsI GCATC 1 cut(s) 165
BmuI ACTGGG 1 cut(s) 617
BpiI GAAGAC 2 cut(s) 567, 893
BplI GAGNNNNNCTC 2 cut(s) 245, 277
BpmI CTGGAG 1 cut(s) 311
BpuMI CCSGG 3 cut(s) 9, 68, 367
BsaAI YACGTR 4 cut(s) 586, 620, 654, 1057
BsaHI GRCGYC 1 cut(s) 81
BsaJI CCNNGG 5 cut(s) 33, 132, 469, 747, 980
BsaWI WCCGGW 2 cut(s) 113, 578
BsaXI ACNNNNNCTCC 4 cut(s) 932, 962, 1031, 1061
Bsc4I CCNNNNNNNGG 3 cut(s) 726, 916, 1097
Bse118I RCCGGY 3 cut(s) 143, 719, 859
Bse1I ACTGG 3 cut(s) 297, 571, 612
Bse3DI GCAATG 1 cut(s) 807
BseBI CCWGG 1 cut(s) 35
BseDI CCNNGG 5 cut(s) 33, 132, 469, 747, 980
BseGI GGATG 2 cut(s) 156, 681
BseLI CCNNNNNNNGG 3 cut(s) 726, 916, 1097
BseMI GCAATG 1 cut(s) 807
BseMII CTCAG 1 cut(s) 1068
BseNI ACTGG 3 cut(s) 297, 571, 612
BsePI GCGCGC 1 cut(s) 715
BseRI GAGGAG 2 cut(s) 38, 764
BseSI GKGCMC 1 cut(s) 14
BseXI GCAGC 1 cut(s) 334
Bsh1236I CGCG 4 cut(s) 237, 332, 717, 917
Bsh1285I CGRYCG 2 cut(s) 371, 1098
BshFI GGCC 9 cut(s) 12, 296, 335, 365, 383, 455, 474, 599, 746
BshNI GGYRCC 1 cut(s) 862
BsiEI CGRYCG 2 cut(s) 371, 1098
BsiHKAI GWGCWC 3 cut(s) 75, 141, 591
BsiHKCI CYCGRG 1 cut(s) 251
BsiSI CCGG 8 cut(s) 8, 68, 114, 144, 367, 579, 720, 860
BslFI GGGAC 1 cut(s) 995
BslI CCNNNNNNNGG 3 cut(s) 726, 916, 1097
BsmAI GTCTC 4 cut(s) 88, 305, 619, 1073
BsmBI CGTCTC 2 cut(s) 88, 1073
BsmFI GGGAC 1 cut(s) 995
BsnI GGCC 9 cut(s) 12, 296, 335, 365, 383, 455, 474, 599, 746
BsoBI CYCGRG 1 cut(s) 251
Bsp120I GGGCCC 1 cut(s) 10
Bsp1286I GDGCHC 6 cut(s) 14, 75, 141, 186, 591, 732
Bsp68I TCGCGA 1 cut(s) 237
BspANI GGCC 9 cut(s) 12, 296, 335, 365, 383, 455, 474, 599, 746
BspCNI CTCAG 1 cut(s) 1069
BspFNI CGCG 4 cut(s) 237, 332, 717, 917
BspPI GGATC 8 cut(s) 202, 215, 460, 748, 765, 857, 900, 971
BspQI GCTCTTC 1 cut(s) 80
BspT107I GGYRCC 1 cut(s) 862
BsrDI GCAATG 1 cut(s) 807
BsrFI RCCGGY 3 cut(s) 143, 719, 859
BsrI ACTGG 3 cut(s) 297, 571, 612
BssAI RCCGGY 3 cut(s) 143, 719, 859
BssECI CCNNGG 5 cut(s) 33, 132, 469, 747, 980
BssHII GCGCGC 1 cut(s) 715
BssNI GRCGYC 1 cut(s) 81
BssSI CACGAG 1 cut(s) 896
BssT1I CCWWGG 1 cut(s) 980
Bst2BI CACGAG 1 cut(s) 896
Bst2UI CCWGG 1 cut(s) 35
Bst4CI ACNGT 4 cut(s) 963, 1073, 1096, 1110
Bst6I CTCTTC 1 cut(s) 80
BstACI GRCGYC 1 cut(s) 81
BstBAI YACGTR 4 cut(s) 586, 620, 654, 1057
BstC8I GCNNGC 2 cut(s) 631, 717
BstDEI CTNAG 1 cut(s) 1077
BstDSI CCRYGG 1 cut(s) 132
BstF5I GGATG 2 cut(s) 156, 681
BstFNI CGCG 4 cut(s) 237, 332, 717, 917
BstH2I RGCGCY 1 cut(s) 553
BstHHI GCGC 4 cut(s) 552, 717, 719, 800
BstMAI GTCTC 4 cut(s) 88, 305, 619, 1073
BstMCI CGRYCG 2 cut(s) 371, 1098
BstMWI GCNNNNNNNGC 6 cut(s) 153, 196, 302, 389, 862, 1051
BstNI CCWGG 1 cut(s) 35
BstSCI CCNGG 4 cut(s) 7, 33, 66, 365
BstSLI GKGCMC 1 cut(s) 14
BstUI CGCG 4 cut(s) 237, 332, 717, 917
BstV1I GCAGC 1 cut(s) 334
BstV2I GAAGAC 2 cut(s) 567, 893
BstX2I RGATCY 4 cut(s) 207, 753, 892, 976
BstYI RGATCY 4 cut(s) 207, 753, 892, 976
BsuRI GGCC 9 cut(s) 12, 296, 335, 365, 383, 455, 474, 599, 746
BtgI CCRYGG 1 cut(s) 132
BtsCI GGATG 2 cut(s) 156, 681
BtuMI TCGCGA 1 cut(s) 237
Cac8I GCNNGC 2 cut(s) 631, 717
CfoI GCGC 4 cut(s) 552, 717, 719, 800
Cfr10I RCCGGY 3 cut(s) 143, 719, 859
Cfr13I GGNCC 9 cut(s) 10, 11, 103, 364, 381, 416, 439, 454, 1073
CseI GACGC 1 cut(s) 923
Csp6I GTAC 1 cut(s) 376
CviQI GTAC 1 cut(s) 376
DdeI CTNAG 1 cut(s) 1077
DriI GACNNNNNGTC 2 cut(s) 611, 1086
EaeI YGGCCR 2 cut(s) 333, 744
Eam1104I CTCTTC 1 cut(s) 80
Eam1105I GACNNNNNGTC 2 cut(s) 611, 1086
EarI CTCTTC 1 cut(s) 80
EciI GGCGGA 1 cut(s) 795
Ecl136II GAGCTC 1 cut(s) 139
Eco130I CCWWGG 1 cut(s) 980
Eco24I GRGCYC 4 cut(s) 14, 141, 186, 732
Eco47I GGWCC 4 cut(s) 103, 416, 439, 1073
Eco53kI GAGCTC 1 cut(s) 139
Eco57I CTGAAG 1 cut(s) 221
Eco72I CACGTG 4 cut(s) 586, 620, 654, 1057
Eco88I CYCGRG 1 cut(s) 251
EcoICRI GAGCTC 1 cut(s) 139
EcoO109I RGGNCCY 3 cut(s) 11, 103, 439
EcoRII CCWGG 1 cut(s) 33
EcoT14I CCWWGG 1 cut(s) 980
EcoT38I GRGCYC 4 cut(s) 14, 141, 186, 732
ErhI CCWWGG 1 cut(s) 980
Esp3I CGTCTC 2 cut(s) 88, 1073
FaiI YATR 3 cut(s) 123, 125, 698
FalI AAGNNNNNCTT 2 cut(s) 92, 124
FaqI GGGAC 1 cut(s) 995
FauI CCCGC 2 cut(s) 528, 665
FbaI TGATCA 2 cut(s) 531, 699
FblI GTMKAC 2 cut(s) 411, 834
Fnu4HI GCNGC 6 cut(s) 5, 148, 333, 348, 857, 918
FokI GGATG 2 cut(s) 143, 688
FriOI GRGCYC 4 cut(s) 14, 141, 186, 732
Fsp4HI GCNGC 6 cut(s) 5, 148, 333, 348, 857, 918
GlaI GCGC 4 cut(s) 551, 716, 718, 799
GluI GCNGC 6 cut(s) 5, 148, 333, 348, 857, 918
GsuI CTGGAG 1 cut(s) 311
HaeII RGCGCY 1 cut(s) 553
HaeIII GGCC 9 cut(s) 12, 296, 335, 365, 383, 455, 474, 599, 746
HapII CCGG 8 cut(s) 8, 68, 114, 144, 367, 579, 720, 860
HgaI GACGC 1 cut(s) 923
HhaI GCGC 4 cut(s) 552, 717, 719, 800
Hin1I GRCGYC 1 cut(s) 81
Hin6I GCGC 4 cut(s) 550, 715, 717, 798
HinP1I GCGC 4 cut(s) 550, 715, 717, 798
HincII GTYRAC 1 cut(s) 412
HindII GTYRAC 1 cut(s) 412
HindIII AAGCTT 1 cut(s) 422
HinfI GANTC 4 cut(s) 232, 239, 954, 1087
HpaII CCGG 8 cut(s) 8, 68, 114, 144, 367, 579, 720, 860
HphI GGTGA 2 cut(s) 13, 133
Hpy166II GTNNAC 2 cut(s) 412, 835
Hpy188I TCNGA 7 cut(s) 181, 465, 758, 770, 878, 953, 1092
Hpy8I GTNNAC 2 cut(s) 412, 835
HpyAV CCTTC 2 cut(s) 532, 929
HpyCH4III ACNGT 4 cut(s) 963, 1073, 1096, 1110
HpyCH4IV ACGT 6 cut(s) 81, 585, 619, 653, 842, 1056
HpyCH4V TGCA 1 cut(s) 871
HpyF10VI GCNNNNNNNGC 6 cut(s) 153, 196, 302, 389, 862, 1051
HpyF3I CTNAG 1 cut(s) 1077
HpySE526I ACGT 6 cut(s) 81, 585, 619, 653, 842, 1056
Hsp92I GRCGYC 1 cut(s) 81
HspAI GCGC 4 cut(s) 550, 715, 717, 798
Ksp22I TGATCA 2 cut(s) 531, 699
LguI GCTCTTC 1 cut(s) 80
LmnI GCTCC 6 cut(s) 136, 181, 274, 522, 735, 805
Lsp1109I GCAGC 1 cut(s) 334
LweI GCATC 1 cut(s) 165
MaeII ACGT 6 cut(s) 81, 585, 619, 653, 842, 1056
MaeIII GTNAC 2 cut(s) 581, 620
MboII GAAGA 5 cut(s) 67, 503, 556, 567, 898
MflI RGATCY 4 cut(s) 207, 753, 892, 976
MhlI GDGCHC 6 cut(s) 14, 75, 141, 186, 591, 732
MluCI AATT 3 cut(s) 661, 686, 786
MlyI GAGTC 3 cut(s) 233, 241, 1096
MmeI TCCRAC 4 cut(s) 159, 798, 982, 1115
MseI TTAA 4 cut(s) 354, 447, 924, 930
MspI CCGG 8 cut(s) 8, 68, 114, 144, 367, 579, 720, 860
MspR9I CCNGG 4 cut(s) 9, 35, 68, 367
MvaI CCWGG 1 cut(s) 35
MvnI CGCG 4 cut(s) 237, 332, 717, 917
MwoI GCNNNNNNNGC 6 cut(s) 153, 196, 302, 389, 862, 1051
NciI CCSGG 3 cut(s) 9, 68, 367
NmeAIII GCCGAG 3 cut(s) 450, 625, 772
NmuCI GTSAC 2 cut(s) 581, 620
NruI TCGCGA 1 cut(s) 237
PalAI GGCGCGCC 1 cut(s) 715
PauI GCGCGC 1 cut(s) 715
PciSI GCTCTTC 1 cut(s) 80
PcsI WCGNNNNNNNCGW 7 cut(s) 48, 336, 591, 597, 909, 996, 1088
PfeI GAWTC 1 cut(s) 954
PkrI GCNGC 6 cut(s) 6, 149, 334, 349, 858, 919
PleI GAGTC 3 cut(s) 233, 240, 1095
PmaCI CACGTG 4 cut(s) 586, 620, 654, 1057
PmlI CACGTG 4 cut(s) 586, 620, 654, 1057
PpsI GAGTC 3 cut(s) 233, 240, 1095
Ppu21I YACGTR 4 cut(s) 586, 620, 654, 1057
PpuMI RGGWCCY 2 cut(s) 103, 439
Psp124BI GAGCTC 1 cut(s) 141
Psp1406I AACGTT 1 cut(s) 842
Psp5II RGGWCCY 2 cut(s) 103, 439
Psp6I CCWGG 1 cut(s) 33
PspCI CACGTG 4 cut(s) 586, 620, 654, 1057
PspGI CCWGG 1 cut(s) 33
PspOMI GGGCCC 1 cut(s) 10
PspPI GGNCC 9 cut(s) 10, 11, 103, 364, 381, 416, 439, 454, 1073
PspPPI RGGWCCY 2 cut(s) 103, 439
PsuI RGATCY 4 cut(s) 207, 753, 892, 976
PteI GCGCGC 1 cut(s) 715
RruI TCGCGA 1 cut(s) 237
RsaI GTAC 1 cut(s) 377
RsaNI GTAC 1 cut(s) 376
SacI GAGCTC 1 cut(s) 141
SalI GTCGAC 1 cut(s) 410
SapI GCTCTTC 1 cut(s) 80
SaqAI TTAA 4 cut(s) 354, 447, 924, 930
SatI GCNGC 6 cut(s) 5, 148, 333, 348, 857, 918
Sau96I GGNCC 9 cut(s) 10, 11, 103, 364, 381, 416, 439, 454, 1073
SchI GAGTC 3 cut(s) 233, 241, 1096
ScrFI CCNGG 4 cut(s) 9, 35, 68, 367
SduI GDGCHC 6 cut(s) 14, 75, 141, 186, 591, 732
SfaNI GCATC 1 cut(s) 165
SgrAI CRCCGGYG 3 cut(s) 143, 719, 859
SgsI GGCGCGCC 1 cut(s) 715
SinI GGWCC 4 cut(s) 103, 416, 439, 1073
Sse9I AATT 3 cut(s) 661, 686, 786
SstI GAGCTC 1 cut(s) 141
StyD4I CCNGG 4 cut(s) 7, 33, 66, 365
StyI CCWWGG 1 cut(s) 980
TaaI ACNGT 4 cut(s) 963, 1073, 1096, 1110
TaiI ACGT 6 cut(s) 84, 588, 622, 656, 845, 1059
TasI AATT 3 cut(s) 661, 686, 786
TauI GCSGC 5 cut(s) 7, 150, 335, 859, 920
TfiI GAWTC 1 cut(s) 954
Tru1I TTAA 4 cut(s) 354, 447, 924, 930
Tru9I TTAA 4 cut(s) 354, 447, 924, 930
TseFI GTSAC 2 cut(s) 581, 620
TseI GCWGC 1 cut(s) 347
Tsp45I GTSAC 2 cut(s) 581, 620
TspDTI ATGAA 3 cut(s) 475, 692, 836
TspGWI ACGGA 5 cut(s) 121, 287, 429, 905, 1097
VpaK11BI GGWCC 4 cut(s) 103, 416, 439, 1073
XmiI GTMKAC 2 cut(s) 411, 834
ZraI GACGTC 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.