Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0022342

Physical Location & Seq

Genomic Coordinates Forward (+)

3850605 .. 3852319

Gene Structure 1715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g06290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1587 bp

ATGAGGCTCTCATCATTTGCTCCTTTTACGCTAAACCATGAAATTCTAAGACTTGAAGTCCTGCTGGCGCAACTTGGGGAGGGACCAAGTCGAGCTTTGGAAATAGTATTACAAAAGGAGGTAGTTATGCACGGACTAGAAAACCATGATAGGGCAAGAAATACAATGATCAGGCACCCCATGAGGCTCTCATCATTTGCTCCTTTCATGCTAAACCGTGAAATTCCAAAACTTGAAGTCCCGCTGGCGCAACTTGGGGAGGGACCAAGTCGGGCTTTGGAAATAGTATTACAAAAGGAGGTAGCCTGGCAGGGACTAGAAAACCAAGATGCAGGTGAAACTTTTTGTAACCTGCAAGCAGAGATAAAAGAAACGCATTATACCAGTTCTCGGCCAAAAGAATTTGAAGTAGGAAGTCTTGTTCCTGTTAATAAAAATGAAATTCCTAGACTTCACTCACAGGGCAGCGCCATTGCAAATCTTGAAGAACAGTTTCCAAACCTGCAGTATGTTACAGACAAATTAGTGTCTCTCCCTTGCATTCAATTGTTGGCTTTGAGGTTCTTGGAGGATTTATTTCGTCCTCGTGAGGTTACTGGTGATGTTTTGGAACAAATTAAGAATGAGCCTCTAATACATAACATAGTTCCGTTGCTCGGATCTTGGCAAGAAGATGAAGCCGAAGATGATGGTGGCTTTCATCTTGAACCAGGAACATCAAATGCTGCTCCTCCAGATGTATCTGCTGTAGAATATGACTATATCAGTGAACATGTTTTTCATGTTAAAGTAGAACATCCTGCAGATAGATATGAGAAGAAGGCTATTTCTGATGAAGCCAAAGAACTCATGGATTGTCATAGAGAGACAAGTGACAGCAGTGCATTCCATAATGGGAAGATTGATGTCTCCGTGGAAAGTCGTGATTTCTTGGGCTTCCTATGTAGCAATGGTGGTCAGTTGCTGATTTGTAATACAAGTAATTGCCCTTTGGTATTTCATCAGAACTTCGAGTCTGACTTAATATGCTATAAGAAGGGTAAATATTACTGCCCCATCTGTTCATATTCTCTTGCTCATGAGAATAGGCTGGGTGAGATAGAAGAAAAGTTGAGAAGAAAGGCAGTGGCTTTTGAGGAAGTCTTCTCCGGCTGTTCTGATGGTTATATCGTTGATGAACAAGTGAATGCGCGAAATGAAAGTGGTTATGGTTGTGACAGTCAATTTGACGATGCTCAAGTTCATAACCAATTTGTCGGAGTGGAAGACAATGAGATGAAAGAAGGGACGGAGTTTGAGGTCGAAGATGAGAACAATGGTGGCAACAGTGTCAGTTGTAGAGGTGAAGGCACCAATGAAATAATTAGAGGAGGTTCTGGACACCGGTGCGTATATGAACTGCTTGAGTTGCAACAGGATGAGGAAACTGCTGTCGAAGAAAGTTCAGACAAAAATGAAGAAGATGAAGATGGGAAAAGGGTGTTTGCGGAGAAAGAAGACGAAATTAGAATGCAGAACTTATGCAACCAGAATCAATGGAAGTGCCCTCAAATACCATTTTTCTATCTGACACAGAGTCTCCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000775 GO:0000910 GO:0000911 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0007275 GO:0007349 GO:0008150 GO:0009524 GO:0009553 GO:0009555 GO:0009558 GO:0009561 GO:0009653 GO:0009987 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022607 GO:0032501 GO:0032502 GO:0032506 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043515 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0048229 GO:0048285 GO:0048646 GO:0048856 GO:0051225 GO:0051301 GO:0061640 GO:0070925 GO:0071840 GO:0090307 GO:0098687 GO:0140014 GO:1902410 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3490 Kinesin

Protein Analysis

529

Amino Acids

59.76

Weight (kDa)

4.68

Isoelectric Point (pI)

43.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022342)

Species	Orthologous Gene IDs
malus_domestica	MD15G1066500.v1.1
pyrus_communis	pycom15g06280 pycom15g06290
rosa_roxburghii	Rroxscaffold_3G00234200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	323
Acc36I	ACCTGC	3 cut(s)	323, 360, 510
AccB1I	GGYRCC	2 cut(s)	174, 1349
AccII	CGCG	1 cut(s)	1192
AciI	CCGC	2 cut(s)	242, 1487
AclWI	GGATC	1 cut(s)	667
AcoI	YGGCCR	1 cut(s)	392
AcsI	RAATTY	4 cut(s)	42, 222, 401, 441
AfiI	CCNNNNNNNGG	3 cut(s)	151, 390, 656
AflIII	ACRYGT	1 cut(s)	772
AgeI	ACCGGT	1 cut(s)	1383
AgsI	TTSAA	6 cut(s)	56, 236, 407, 485, 545, 707
AhdI	GACNNNNNGTC	2 cut(s)	56, 1575
AjnI	CCWGG	2 cut(s)	305, 709
AloI	GAACNNNNNNTCC	2 cut(s)	405, 437
AluBI	AGCT	1 cut(s)	95
AluI	AGCT	1 cut(s)	95
Alw26I	GTCTC	4 cut(s)	534, 860, 913, 1583
AlwI	GGATC	1 cut(s)	667
AlwNI	CAGNNNCTG	1 cut(s)	964
AoxI	GGCC	1 cut(s)	392
ApeKI	GCWGC	2 cut(s)	465, 725
ApoI	RAATTY	4 cut(s)	42, 222, 401, 441
ArsI	GACNNNNNNTTYG	2 cut(s)	1208, 1240
AsiGI	ACCGGT	1 cut(s)	1383
Asp700I	GAANNNNTTC	1 cut(s)	492
AspLEI	GCGC	4 cut(s)	70, 250, 470, 1192
AspS9I	GGNCC	2 cut(s)	83, 263
AsuHPI	GGTGA	4 cut(s)	347, 611, 1106, 1355
AvaII	GGWCC	2 cut(s)	83, 263
BaeGI	GKGCMC	1 cut(s)	1547
BanI	GGYRCC	2 cut(s)	174, 1349
BauI	CACGAG	1 cut(s)	585
BbsI	GAAGAC	3 cut(s)	1135, 1272, 1503
BbvI	GCAGC	2 cut(s)	477, 712
BccI	CCATC	4 cut(s)	683, 1064, 1154, 1463
BciT130I	CCWGG	2 cut(s)	307, 711
BclI	TGATCA	1 cut(s)	168
BcoDI	GTCTC	4 cut(s)	534, 860, 913, 1583
BfaI	CTAG	3 cut(s)	137, 317, 447
BfmI	CTRYAG	4 cut(s)	503, 747, 801, 1583
BfoI	RGCGCY	1 cut(s)	471
BfuAI	ACCTGC	3 cut(s)	323, 360, 510
BisI	GCNGC	2 cut(s)	466, 726
BlsI	GCNGC	2 cut(s)	467, 727
Bme1390I	CCNGG	2 cut(s)	307, 711
Bme18I	GGWCC	2 cut(s)	83, 263
BmeRI	GACNNNNNGTC	2 cut(s)	56, 1575
BmgT120I	GGNCC	2 cut(s)	83, 263
BmiI	GGNNCC	4 cut(s)	84, 176, 264, 1351
BmrFI	CCNGG	2 cut(s)	307, 711
BmsI	GCATC	2 cut(s)	319, 1222
BpiI	GAAGAC	3 cut(s)	1135, 1272, 1503
BpmI	CTGGAG	1 cut(s)	717
BpuEI	CTTGAG	2 cut(s)	1221, 1424
BsaJI	CCNNGG	1 cut(s)	912
BsaWI	WCCGGW	1 cut(s)	1383
BsaXI	ACNNNNNCTCC	1 cut(s)	1563
Bsc4I	CCNNNNNNNGG	3 cut(s)	151, 390, 656
Bse118I	RCCGGY	1 cut(s)	1383
Bse1I	ACTGG	2 cut(s)	384, 601
Bse3DI	GCAATG	2 cut(s)	471, 955
BseBI	CCWGG	2 cut(s)	307, 711
BseDI	CCNNGG	1 cut(s)	912
BseGI	GGATG	2 cut(s)	796, 1423
BseLI	CCNNNNNNNGG	3 cut(s)	151, 390, 656
BseMI	GCAATG	2 cut(s)	471, 955
BseNI	ACTGG	2 cut(s)	384, 601
BseRI	GAGGAG	2 cut(s)	720, 1383
BseSI	GKGCMC	1 cut(s)	1547
BseXI	GCAGC	2 cut(s)	477, 712
BseYI	CCCAGC	1 cut(s)	1090
Bsh1236I	CGCG	1 cut(s)	1192
BshFI	GGCC	1 cut(s)	394
BshNI	GGYRCC	2 cut(s)	174, 1349
BshTI	ACCGGT	1 cut(s)	1383
BsiSI	CCGG	2 cut(s)	1149, 1384
BslFI	GGGAC	5 cut(s)	96, 224, 276, 327, 1300
BslI	CCNNNNNNNGG	3 cut(s)	151, 390, 656
BsmAI	GTCTC	4 cut(s)	534, 860, 913, 1583
BsmFI	GGGAC	5 cut(s)	96, 224, 276, 327, 1300
BsmI	GAATGC	4 cut(s)	540, 884, 1192, 1515
BsnI	GGCC	1 cut(s)	394
Bsp1286I	GDGCHC	1 cut(s)	1547
Bsp143I	GATC	2 cut(s)	168, 659
BspACI	CCGC	2 cut(s)	242, 1487
BspANI	GGCC	1 cut(s)	394
BspFNI	CGCG	1 cut(s)	1192
BspHI	TCATGA	1 cut(s)	1078
BspLI	GGNNCC	4 cut(s)	84, 176, 264, 1351
BspMAI	CTGCAG	2 cut(s)	507, 805
BspMI	ACCTGC	3 cut(s)	323, 360, 510
BspPI	GGATC	1 cut(s)	667
BspT107I	GGYRCC	2 cut(s)	174, 1349
BsrDI	GCAATG	2 cut(s)	471, 955
BsrFI	RCCGGY	1 cut(s)	1383
BsrI	ACTGG	2 cut(s)	384, 601
BssAI	RCCGGY	1 cut(s)	1383
BssECI	CCNNGG	1 cut(s)	912
BssMI	GATC	2 cut(s)	168, 659
BssSI	CACGAG	1 cut(s)	585
Bst2BI	CACGAG	1 cut(s)	585
Bst2UI	CCWGG	2 cut(s)	307, 711
Bst4CI	ACNGT	4 cut(s)	218, 492, 1220, 1328
BstC8I	GCNNGC	3 cut(s)	66, 246, 357
BstDEI	CTNAG	1 cut(s)	47
BstDSI	CCRYGG	1 cut(s)	912
BstF5I	GGATG	2 cut(s)	796, 1423
BstFNI	CGCG	1 cut(s)	1192
BstH2I	RGCGCY	1 cut(s)	471
BstHHI	GCGC	4 cut(s)	70, 250, 470, 1192
BstKTI	GATC	2 cut(s)	171, 662
BstMAI	GTCTC	4 cut(s)	534, 860, 913, 1583
BstMBI	GATC	2 cut(s)	168, 659
BstMWI	GCNNNNNNNGC	1 cut(s)	1408
BstNI	CCWGG	2 cut(s)	307, 711
BstNSI	RCATGY	1 cut(s)	776
BstSCI	CCNGG	2 cut(s)	305, 709
BstSFI	CTRYAG	4 cut(s)	503, 747, 801, 1583
BstSLI	GKGCMC	1 cut(s)	1547
BstUI	CGCG	1 cut(s)	1192
BstV1I	GCAGC	2 cut(s)	477, 712
BstV2I	GAAGAC	3 cut(s)	1135, 1272, 1503
BstX2I	RGATCY	1 cut(s)	659
BstYI	RGATCY	1 cut(s)	659
BsuRI	GGCC	1 cut(s)	394
BtgI	CCRYGG	1 cut(s)	912
BtsCI	GGATG	2 cut(s)	796, 1423
BtsI	GCAGTG	2 cut(s)	886, 1131
BtsIMutI	CAGTG	4 cut(s)	772, 886, 1131, 1333
BveI	ACCTGC	3 cut(s)	323, 360, 510
Cac8I	GCNNGC	3 cut(s)	66, 246, 357
CaiI	CAGNNNCTG	1 cut(s)	964
CciI	TCATGA	1 cut(s)	1078
CfoI	GCGC	4 cut(s)	70, 250, 470, 1192
Cfr10I	RCCGGY	1 cut(s)	1383
Cfr13I	GGNCC	2 cut(s)	83, 263
CspAI	ACCGGT	1 cut(s)	1383
CviAII	CATG	8 cut(s)	38, 146, 181, 208, 773, 782, 850, 1079
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	2 cut(s)	170, 661
DpnII	GATC	2 cut(s)	168, 659
DriI	GACNNNNNGTC	2 cut(s)	56, 1575
EaeI	YGGCCR	1 cut(s)	392
Eam1105I	GACNNNNNGTC	2 cut(s)	56, 1575
Eco47I	GGWCC	2 cut(s)	83, 263
EcoRII	CCWGG	2 cut(s)	305, 709
FaeI	CATG	8 cut(s)	41, 149, 184, 211, 776, 785, 853, 1082
FalI	AAGNNNNNCTT	4 cut(s)	79, 111, 259, 291
FaqI	GGGAC	5 cut(s)	96, 224, 276, 327, 1300
FatI	CATG	8 cut(s)	37, 145, 180, 207, 772, 781, 849, 1078
FauI	CCCGC	1 cut(s)	249
FbaI	TGATCA	1 cut(s)	168
Fnu4HI	GCNGC	2 cut(s)	466, 726
FokI	GGATG	2 cut(s)	783, 1430
Fsp4HI	GCNGC	2 cut(s)	466, 726
FspBI	CTAG	3 cut(s)	137, 317, 447
GlaI	GCGC	4 cut(s)	69, 249, 469, 1191
GluI	GCNGC	2 cut(s)	466, 726
GsaI	CCCAGC	1 cut(s)	1094
GsuI	CTGGAG	1 cut(s)	717
HaeII	RGCGCY	1 cut(s)	471
HaeIII	GGCC	1 cut(s)	394
HapII	CCGG	2 cut(s)	1149, 1384
HhaI	GCGC	4 cut(s)	70, 250, 470, 1192
Hin1II	CATG	8 cut(s)	41, 149, 184, 211, 776, 785, 853, 1082
Hin6I	GCGC	4 cut(s)	68, 248, 468, 1190
HinP1I	GCGC	4 cut(s)	68, 248, 468, 1190
HinfI	GANTC	3 cut(s)	1013, 1531, 1576
HpaII	CCGG	2 cut(s)	1149, 1384
HphI	GGTGA	4 cut(s)	347, 611, 1106, 1355
Hpy166II	GTNNAC	1 cut(s)	770
Hpy188I	TCNGA	8 cut(s)	659, 832, 1005, 1018, 1159, 1259, 1447, 1569
Hpy188III	TCNNGA	7 cut(s)	482, 587, 704, 734, 923, 1079, 1377
Hpy8I	GTNNAC	1 cut(s)	770
HpyAV	CCTTC	4 cut(s)	814, 1030, 1277, 1340
HpyCH4III	ACNGT	4 cut(s)	218, 492, 1220, 1328
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1408
HpyF3I	CTNAG	1 cut(s)	47
Hsp92II	CATG	8 cut(s)	41, 149, 184, 211, 776, 785, 853, 1082
HspAI	GCGC	4 cut(s)	68, 248, 468, 1190
Ksp22I	TGATCA	1 cut(s)	168
Kzo9I	GATC	2 cut(s)	168, 659
LmnI	GCTCC	3 cut(s)	25, 205, 733
Lsp1109I	GCAGC	2 cut(s)	477, 712
LweI	GCATC	2 cut(s)	319, 1222
MaeI	CTAG	3 cut(s)	137, 317, 447
MaeIII	GTNAC	5 cut(s)	347, 511, 592, 872, 1214
MalI	GATC	2 cut(s)	170, 661
MboI	GATC	2 cut(s)	168, 659
MfeI	CAATTG	1 cut(s)	545
MflI	RGATCY	1 cut(s)	659
MhlI	GDGCHC	1 cut(s)	1547
MlyI	GAGTC	2 cut(s)	1022, 1585
MmeI	TCCRAC	1 cut(s)	1237
MroXI	GAANNNNTTC	1 cut(s)	492
MseI	TTAA	4 cut(s)	429, 618, 786, 1022
MspA1I	CMGCKG	1 cut(s)	244
MspI	CCGG	2 cut(s)	1149, 1384
MspR9I	CCNGG	2 cut(s)	307, 711
MunI	CAATTG	1 cut(s)	545
Mva1269I	GAATGC	4 cut(s)	540, 884, 1192, 1515
MvaI	CCWGG	2 cut(s)	307, 711
MvnI	CGCG	1 cut(s)	1192
MwoI	GCNNNNNNNGC	1 cut(s)	1408
NdeII	GATC	2 cut(s)	168, 659
NlaIII	CATG	8 cut(s)	41, 149, 184, 211, 776, 785, 853, 1082
NlaIV	GGNNCC	4 cut(s)	84, 176, 264, 1351
NmeAIII	GCCGAG	1 cut(s)	370
NmuCI	GTSAC	2 cut(s)	872, 1214
NspI	RCATGY	1 cut(s)	776
PagI	TCATGA	1 cut(s)	1078
PaqCI	CACCTGC	1 cut(s)	323
PciI	ACATGT	1 cut(s)	772
PctI	GAATGC	4 cut(s)	540, 884, 1192, 1515
PdmI	GAANNNNTTC	1 cut(s)	492
PfeI	GAWTC	1 cut(s)	1531
PflFI	GACNNNGTC	2 cut(s)	87, 267
PinAI	ACCGGT	1 cut(s)	1383
PkrI	GCNGC	2 cut(s)	467, 727
PleI	GAGTC	2 cut(s)	1021, 1584
PpsI	GAGTC	2 cut(s)	1021, 1584
PscI	ACATGT	1 cut(s)	772
Psp6I	CCWGG	2 cut(s)	305, 709
PspFI	CCCAGC	1 cut(s)	1090
PspGI	CCWGG	2 cut(s)	305, 709
PspN4I	GGNNCC	4 cut(s)	84, 176, 264, 1351
PspPI	GGNCC	2 cut(s)	83, 263
PstI	CTGCAG	2 cut(s)	507, 805
PstNI	CAGNNNCTG	1 cut(s)	964
PsuI	RGATCY	1 cut(s)	659
PsyI	GACNNNGTC	2 cut(s)	87, 267
SaqAI	TTAA	4 cut(s)	429, 618, 786, 1022
SatI	GCNGC	2 cut(s)	466, 726
Sau3AI	GATC	2 cut(s)	168, 659
Sau96I	GGNCC	2 cut(s)	83, 263
SchI	GAGTC	2 cut(s)	1022, 1585
ScrFI	CCNGG	2 cut(s)	307, 711
SduI	GDGCHC	1 cut(s)	1547
SfaNI	GCATC	2 cut(s)	319, 1222
SfcI	CTRYAG	4 cut(s)	503, 747, 801, 1583
SgrAI	CRCCGGYG	1 cut(s)	1383
SinI	GGWCC	2 cut(s)	83, 263
SmlI	CTYRAG	2 cut(s)	1236, 1403
SmoI	CTYRAG	2 cut(s)	1236, 1403
SsiI	CCGC	2 cut(s)	242, 1487
SspI	AATATT	1 cut(s)	1046
SspMI	CTAG	3 cut(s)	137, 317, 447
StyD4I	CCNGG	2 cut(s)	305, 709
TaaI	ACNGT	4 cut(s)	218, 492, 1220, 1328
TaqI	TCGA	4 cut(s)	91, 1011, 1302, 1434
TfiI	GAWTC	1 cut(s)	1531
Tru1I	TTAA	4 cut(s)	429, 618, 786, 1022
Tru9I	TTAA	4 cut(s)	429, 618, 786, 1022
TscAI	CASTG	4 cut(s)	772, 886, 1131, 1333
TseFI	GTSAC	2 cut(s)	872, 1214
TseI	GCWGC	2 cut(s)	465, 725
Tsp45I	GTSAC	2 cut(s)	872, 1214
TspGWI	ACGGA	4 cut(s)	147, 639, 901, 1304
TspRI	CASTG	4 cut(s)	772, 886, 1131, 1333
Tth111I	GACNNNGTC	2 cut(s)	87, 267
VpaK11BI	GGWCC	2 cut(s)	83, 263
XapI	RAATTY	4 cut(s)	42, 222, 401, 441
XceI	RCATGY	1 cut(s)	776
XcmI	CCANNNNNNNNNTGG	1 cut(s)	847
XmnI	GAANNNNTTC	1 cut(s)	492
XspI	CTAG	3 cut(s)	137, 317, 447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.