Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0022342

Physical Location & Seq

Genomic Coordinates Reverse (-)

20501503 .. 20503351

Gene Structure 1849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00234200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGCGTAGTTCTATTGTGTCCTCGAGCAAGTCTTGTGACAATAAGAGAGACTTCTTGAAGCGGAAAGTTAATCGCGGCATGCAAGGCTTGGAAAATGATAGAGAAGCCATTGACACGGGAAGAAACGGACACATACCTTACAGAGATTCCAAGCTAACACGCATACTGCAAAATTCTTTGGGAGGTAACGCTAGGACAGCCATCATTTGCACCATGAGCTCTGCACGAAGTCATGTTGAGCAATCAAAAAACACCCTGTTCTTTGCAAGTTTTGCAAAAGAGGTTACTACTAATGCAAAGGTCGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3490 Kinesin

Protein Analysis

102

Amino Acids

11.31

Weight (kDa)

10.28

Isoelectric Point (pI)

48.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	9 - 95	4.7e-21	Kinesin motor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022342)

Species	Orthologous Gene IDs
malus_domestica	MD15G1066500.v1.1
pyrus_communis	pycom15g06280 pycom15g06290
rosa_roxburghii	Rroxscaffold_3G00234200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	75
AciI	CCGC	2 cut(s)	61, 75
AcsI	RAATTY	1 cut(s)	172
AgsI	TTSAA	1 cut(s)	58
AluBI	AGCT	2 cut(s)	154, 219
AluI	AGCT	2 cut(s)	154, 219
Alw21I	GWGCWC	1 cut(s)	221
Alw26I	GTCTC	1 cut(s)	42
Ama87I	CYCGRG	1 cut(s)	22
ApoI	RAATTY	1 cut(s)	172
AvaI	CYCGRG	1 cut(s)	22
BanII	GRGCYC	1 cut(s)	221
Bbv12I	GWGCWC	1 cut(s)	221
BccI	CCATC	1 cut(s)	209
BcoDI	GTCTC	1 cut(s)	42
BfaI	CTAG	1 cut(s)	192
BisI	GCNGC	1 cut(s)	76
BlsI	GCNGC	1 cut(s)	77
BmeT110I	CYCGRG	1 cut(s)	22
BsgI	GTGCAG	1 cut(s)	207
Bsh1236I	CGCG	1 cut(s)	75
BsiHKAI	GWGCWC	1 cut(s)	221
BsiHKCI	CYCGRG	1 cut(s)	22
BsmAI	GTCTC	1 cut(s)	42
BsoBI	CYCGRG	1 cut(s)	22
Bsp1286I	GDGCHC	1 cut(s)	221
BspACI	CCGC	2 cut(s)	61, 75
BspFNI	CGCG	1 cut(s)	75
BstAPI	GCANNNNNTGC	1 cut(s)	272
BstC8I	GCNNGC	1 cut(s)	80
BstFNI	CGCG	1 cut(s)	75
BstMAI	GTCTC	1 cut(s)	42
BstMWI	GCNNNNNNNGC	4 cut(s)	84, 197, 216, 272
BstNSI	RCATGY	1 cut(s)	82
BstUI	CGCG	1 cut(s)	75
Cac8I	GCNNGC	1 cut(s)	80
CviAII	CATG	3 cut(s)	79, 214, 233
CviJI	RGCY	5 cut(s)	87, 107, 154, 200, 219
CviKI_1	RGCY	5 cut(s)	87, 107, 154, 200, 219
Ecl136II	GAGCTC	1 cut(s)	219
Eco24I	GRGCYC	1 cut(s)	221
Eco53kI	GAGCTC	1 cut(s)	219
Eco88I	CYCGRG	1 cut(s)	22
EcoICRI	GAGCTC	1 cut(s)	219
EcoT38I	GRGCYC	1 cut(s)	221
FaeI	CATG	3 cut(s)	82, 217, 236
FaiI	YATR	5 cut(s)	80, 134, 164, 215, 234
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FatI	CATG	3 cut(s)	78, 213, 232
Fnu4HI	GCNGC	1 cut(s)	76
FriOI	GRGCYC	1 cut(s)	221
Fsp4HI	GCNGC	1 cut(s)	76
FspBI	CTAG	1 cut(s)	192
GluI	GCNGC	1 cut(s)	76
Hin1II	CATG	3 cut(s)	82, 217, 236
HinfI	GANTC	1 cut(s)	146
Hpy188I	TCNGA	1 cut(s)	305
Hpy188III	TCNNGA	1 cut(s)	55
HpyCH4V	TGCA	7 cut(s)	82, 169, 210, 224, 266, 275, 296
HpyF10VI	GCNNNNNNNGC	4 cut(s)	84, 197, 216, 272
Hsp92II	CATG	3 cut(s)	82, 217, 236
LpnPI	CCDG	1 cut(s)	269
MaeI	CTAG	1 cut(s)	192
MaeIII	GTNAC	3 cut(s)	35, 185, 283
MboII	GAAGA	1 cut(s)	132
MhlI	GDGCHC	1 cut(s)	221
MluCI	AATT	1 cut(s)	172
MmeI	TCCRAC	1 cut(s)	283
MnlI	CCTC	3 cut(s)	31, 176, 274
MseI	TTAA	1 cut(s)	69
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	4 cut(s)	84, 197, 216, 272
NlaIII	CATG	3 cut(s)	82, 217, 236
NmuCI	GTSAC	1 cut(s)	35
NspI	RCATGY	1 cut(s)	82
PaeI	GCATGC	1 cut(s)	82
PaeR7I	CTCGAG	1 cut(s)	22
PfeI	GAWTC	1 cut(s)	146
PkrI	GCNGC	1 cut(s)	77
Psp124BI	GAGCTC	1 cut(s)	221
PspXI	VCTCGAGB	1 cut(s)	22
SacI	GAGCTC	1 cut(s)	221
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	1 cut(s)	76
SduI	GDGCHC	1 cut(s)	221
SetI	ASST	6 cut(s)	139, 156, 187, 221, 285, 303
Sfr274I	CTCGAG	1 cut(s)	22
SlaI	CTCGAG	1 cut(s)	22
SmlI	CTYRAG	1 cut(s)	22
SmoI	CTYRAG	1 cut(s)	22
SphI	GCATGC	1 cut(s)	82
Sse9I	AATT	1 cut(s)	172
SsiI	CCGC	2 cut(s)	61, 75
SspMI	CTAG	1 cut(s)	192
SstI	GAGCTC	1 cut(s)	221
TaqI	TCGA	1 cut(s)	23
TasI	AATT	1 cut(s)	172
TauI	GCSGC	1 cut(s)	78
TfiI	GAWTC	1 cut(s)	146
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TseFI	GTSAC	1 cut(s)	35
Tsp45I	GTSAC	1 cut(s)	35
TspGWI	ACGGA	1 cut(s)	141
XapI	RAATTY	1 cut(s)	172
XceI	RCATGY	1 cut(s)	82
XhoI	CTCGAG	1 cut(s)	22
XspI	CTAG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.