Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010987

Physical Location & Seq

Genomic Coordinates Forward (+)

4050411 .. 4053364

Gene Structure 2954 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGTGGCGGCAAATCGGGGACAGAGAAGCGGGAAAGCTCCGCCCAAATTCGTTCTTAAATCGAATCAAGTCCACACGGATCCAAACGCTCCAACTCTCCAATCACAAAGACATCATCTCCCCTCATCGCGGCTCCGTCAACACTCTCCAGCTCGATTTGACGGCGGGCCGGTACCTGTTATCCGGCGCCTCCGATGCTTCCGCCGCCGTCTTCGATGTCCAGCGCGGGACCGATTACGGACGCGGCGGAGCTATCACGAGGCACAAGTGCTTGTTTGCGGTGGATAAGCAGCACGAGCACGGGCATAAGTATGCGGTGTCCTCCGCCGTGTGGTATCCGGTCGACACCGGACTGTTTGTGACGGGTTCGTACGATCATCACATCAATGTTTGGGATACGAATACGACGCAGGTAGTGATGGACTTCAAGATGCCGGGGAAGGTGTACCGGACTGCAATGTCCCCTCTGGCAACTTCTCACATGCTCATTGCTGCCGGTACTGAAGATGTTCAAGTTCGCCTCTGTGATATTGCTTCTGGGGCTTTTGCTCACACCTTGTCTGGCCACCGCGATGGTGTGATGACTGTGGAATGGTCTACTTCTAGCGAGTGGGTATTGCTTACAGGTGGATGTGATGGTGCAATACGTTTTTGGGACATTAGACGTGCCGGATGTTTTCGTGTTTTGATCGATCAATCTCAGTCTCAGCTTGGGAGGCGTCCACCCATCCTGGAACGCTCTACCACAATTAAGGGTTCAACAGTTAAGCCCTCGTCACCAAGTCAAAGCACATCTGCAAAAGCTCGGGCACCACAAAGGAAACTTTCTAATGGGAGTGGTGCAAAGCACTCACTCATTGGTAAAAGTCCAGTAAAGGGATCTATCAAGCAAAGATTACATCCAGGGATGCTGTCTAGTCAGGATCGCGCCACTGCCCATTACGGTGCTGTTACTGGATTAAAAGTCACTGAGGATGGCATGTACCTCTTAAGTGCAGGTTCCGATTCAAGATTGAGGTTGTGGGATGTAGAATCTGGCTGCAATACTTTGGTGAACTTTGAAACCGTGCGTATGCAAACCAGCAGGCCCATACAGTTAGCTACAAGTCAGAATTCGGAGCTTGTTTTTGTTCCCTGCATGACAGCTGTGAAGGCATTCGATATGTGGTCGGGTAAAACATCCCTGAAATTTCGTGGTCACTATGAGCATGTAAACTGTTGCTGGTTTAGTTCACGGGATCAGGAATTGTACACTGGTGGCAATGATAGACAAATTCTAGTTTGGTCGCCGCCCAGATTGGTTTCCAATGAGGATGAAGGGCCCTCTAAGGACGAGGATAATTGGAGTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0005488 GO:0005575 GO:0006139 GO:0006259 GO:0006281 GO:0006282 GO:0006283 GO:0006289 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009893 GO:0009987 GO:0010604 GO:0016567 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031325 GO:0032446 GO:0032991 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044877 GO:0045739 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051716 GO:0051865 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:1901360 GO:1901564 GO:2001020 GO:2001022

KEGG Pathways

Metabolic & Signaling

ko03420 ko04120 map03420 map04120

Pfam Domains

Protein Families

WD40

Protein Analysis

451

Amino Acids

49.72

Weight (kDa)

9.19

Isoelectric Point (pI)

40.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_Prp19	PF24814	26 - 144	3e-06	Prp19 WD40 domain
WD40_CDC20-Fz	PF24807	33 - 151	1.1e-07	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	40 - 236	1.2e-20	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	42 - 180	1.9e-12	THOC3 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	56 - 223	5.8e-12	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	100 - 233	1.1e-16	WDR3 first beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	106 - 223	1.3e-07	TEP-1 second beta-propeller
Beta-prop_WDR3_2nd	PF25172	115 - 221	4.6e-08	WDR3 second beta-propeller domain
Beta-prop_EML_2	PF23414	117 - 219	6.2e-07	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR36-Utp21_1st	PF25171	119 - 227	1.4e-07	WDR36/Utp21 first beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	120 - 231	4.7e-06	WDR90/POC16, second beta-propeller
WD40_WDHD1_1st	PF24817	158 - 228	5.4e-10	WDHD1 first WD40 domain
WD40_CDC20-Fz	PF24807	159 - 227	2.6e-07	CDC20/Fizzy WD40 domain
WD40_Prp19	PF24814	159 - 228	3.8e-07	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	162 - 229	8.4e-10	THOC3 beta-propeller domain
WD40	PF00400	183 - 219	1.2e-07	WD domain, G-beta repeat
Beta-prop_WDR3_2nd	PF25172	307 - 428	1.3e-07	WDR3 second beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	309 - 429	1.3e-07	WDR36/Utp21 second beta-propeller domain
WD40_WDHD1_1st	PF24817	309 - 429	4.7e-11	WDHD1 first WD40 domain
Beta-prop_WDR5	PF25175	311 - 429	5.4e-12	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	365 - 428	4.5e-07	WDR3 first beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19750 AT1G19750 AT1G27840 AT1G27840 AT1G27840
fragaria_vesca	FvH4_2g33100
malus_domestica	MD15G1070100.v1.1
prunus_persica	Prupe.1G422900_v2.0.a1
pyrus_communis	pycom15g06610
rosa_chinensis	RchiOBHm_Chr6g0309581
rosa_laevigata	RLG00000010551
rosa_multiflora	Rmu_sc0024715.1_g000001 Rmu_sc0030536.1_g000002
rosa_roxburghii	Rroxscaffold_7G00159300
rosa_rugosa	Rorug06G0372900
rosa_samantha	Rh6AG486500 Rh6BG495900 Rh6CG500800 Rh6DG486700
rosa_wichuraiana	Rw6G042370

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	457
Acc36I	ACCTGC	2 cut(s)	400, 986
Acc65I	GGTACC	1 cut(s)	171
AccB1I	GGYRCC	3 cut(s)	171, 185, 808
AccI	GTMKAC	2 cut(s)	342, 596
AccII	CGCG	5 cut(s)	129, 225, 243, 570, 927
AclWI	GGATC	5 cut(s)	73, 86, 886, 930, 1245
AcoI	YGGCCR	1 cut(s)	562
AcsI	RAATTY	4 cut(s)	46, 1111, 1187, 1272
AcuI	CTGAAG	1 cut(s)	522
AcyI	GRCGYC	2 cut(s)	186, 718
AfaI	GTAC	6 cut(s)	173, 371, 446, 499, 983, 1250
AfiI	CCNNNNNNNGG	3 cut(s)	128, 330, 875
AflII	CTTAAG	1 cut(s)	988
AgsI	TTSAA	5 cut(s)	427, 512, 759, 1008, 1061
AjiI	CACGTC	1 cut(s)	665
AjnI	CCWGG	2 cut(s)	729, 901
AluBI	AGCT	8 cut(s)	37, 151, 251, 709, 803, 1100, 1120, 1145
AluI	AGCT	8 cut(s)	37, 151, 251, 709, 803, 1100, 1120, 1145
Alw21I	GWGCWC	1 cut(s)	300
Alw26I	GTCTC	1 cut(s)	708
AlwI	GGATC	5 cut(s)	73, 86, 886, 930, 1245
Ama87I	CYCGRG	1 cut(s)	804
AoxI	GGCC	4 cut(s)	166, 562, 1085, 1319
ApaI	GGGCCC	1 cut(s)	1323
ApeKI	GCWGC	3 cut(s)	289, 491, 1038
ApoI	RAATTY	4 cut(s)	46, 1111, 1187, 1272
Asp700I	GAANNNNTTC	2 cut(s)	507, 1154
Asp718I	GGTACC	1 cut(s)	171
AspLEI	GCGC	3 cut(s)	188, 225, 929
AspS9I	GGNCC	5 cut(s)	166, 228, 1086, 1319, 1320
AsuC2I	CCSGG	1 cut(s)	435
AsuHPI	GGTGA	2 cut(s)	768, 1063
AvaI	CYCGRG	1 cut(s)	804
AvaII	GGWCC	1 cut(s)	228
BaeGI	GKGCMC	2 cut(s)	811, 1323
BalI	TGGCCA	1 cut(s)	564
BamHI	GGATCC	1 cut(s)	78
BanI	GGYRCC	3 cut(s)	171, 185, 808
BanII	GRGCYC	1 cut(s)	1323
BauI	CACGAG	2 cut(s)	256, 293
BbsI	GAAGAC	1 cut(s)	202
Bbv12I	GWGCWC	1 cut(s)	300
BbvI	GCAGC	3 cut(s)	301, 478, 1025
BccI	CCATC	5 cut(s)	412, 566, 629, 734, 968
BceAI	ACGGC	3 cut(s)	177, 191, 311
BciT130I	CCWGG	2 cut(s)	731, 903
BciVI	GTATCC	2 cut(s)	345, 388
BcnI	CCSGG	1 cut(s)	435
BcoDI	GTCTC	1 cut(s)	708
BfaI	CTAG	4 cut(s)	603, 915, 1277, 1351
BfoI	RGCGCY	1 cut(s)	189
BfrI	CTTAAG	1 cut(s)	988
BfuAI	ACCTGC	2 cut(s)	400, 986
BfuI	GTATCC	2 cut(s)	345, 388
BisI	GCNGC	8 cut(s)	8, 130, 204, 244, 290, 492, 1039, 1289
BlsI	GCNGC	8 cut(s)	9, 131, 205, 245, 291, 493, 1040, 1290
Bme1390I	CCNGG	3 cut(s)	435, 731, 903
Bme18I	GGWCC	1 cut(s)	228
BmeT110I	CYCGRG	1 cut(s)	804
BmgBI	CACGTC	1 cut(s)	665
BmgT120I	GGNCC	5 cut(s)	166, 228, 1086, 1319, 1320
BmiI	GGNNCC	8 cut(s)	80, 133, 173, 187, 229, 810, 1000, 1321
BmrFI	CCNGG	3 cut(s)	435, 731, 903
BmsI	GCATC	3 cut(s)	184, 420, 897
BpiI	GAAGAC	1 cut(s)	202
BpmI	CTGGAG	1 cut(s)	131
BpuMI	CCSGG	1 cut(s)	435
Bsa29I	ATCGAT	1 cut(s)	690
BsaHI	GRCGYC	2 cut(s)	186, 718
BsaJI	CCNNGG	2 cut(s)	434, 902
BsaWI	WCCGGW	3 cut(s)	337, 347, 447
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	3 cut(s)	128, 330, 875
Bse118I	RCCGGY	2 cut(s)	168, 494
Bse1I	ACTGG	3 cut(s)	869, 958, 1258
Bse3DI	GCAATG	3 cut(s)	462, 486, 1267
BseBI	CCWGG	2 cut(s)	731, 903
BseCI	ATCGAT	1 cut(s)	690
BseDI	CCNNGG	2 cut(s)	434, 902
BseGI	GGATG	9 cut(s)	635, 677, 726, 898, 912, 979, 1030, 1178, 1318
BseLI	CCNNNNNNNGG	3 cut(s)	128, 330, 875
BseMI	GCAATG	3 cut(s)	462, 486, 1267
BseMII	CTCAG	3 cut(s)	713, 719, 960
BseNI	ACTGG	3 cut(s)	869, 958, 1258
BseSI	GKGCMC	2 cut(s)	811, 1323
BseXI	GCAGC	3 cut(s)	301, 478, 1025
BsgI	GTGCAG	1 cut(s)	1014
Bsh1236I	CGCG	5 cut(s)	129, 225, 243, 570, 927
Bsh1285I	CGRYCG	1 cut(s)	342
BshFI	GGCC	4 cut(s)	168, 564, 1087, 1321
BshNI	GGYRCC	3 cut(s)	171, 185, 808
BshVI	ATCGAT	1 cut(s)	690
BsiEI	CGRYCG	1 cut(s)	342
BsiHKAI	GWGCWC	1 cut(s)	300
BsiHKCI	CYCGRG	1 cut(s)	804
BsiSI	CCGG	8 cut(s)	169, 183, 338, 348, 434, 448, 495, 669
BsiWI	CGTACG	1 cut(s)	369
BslFI	GGGAC	4 cut(s)	32, 241, 445, 668
BslI	CCNNNNNNNGG	3 cut(s)	128, 330, 875
BsmAI	GTCTC	1 cut(s)	708
BsmFI	GGGAC	4 cut(s)	32, 241, 445, 668
BsmI	GAATGC	1 cut(s)	1154
BsnI	GGCC	4 cut(s)	168, 564, 1087, 1321
BsoBI	CYCGRG	1 cut(s)	804
Bsp120I	GGGCCC	1 cut(s)	1319
Bsp1286I	GDGCHC	3 cut(s)	300, 811, 1323
Bsp1407I	TGTACA	1 cut(s)	1248
Bsp143I	GATC	7 cut(s)	78, 373, 687, 691, 878, 922, 1237
BspANI	GGCC	4 cut(s)	168, 564, 1087, 1321
BspCNI	CTCAG	3 cut(s)	712, 718, 961
BspDI	ATCGAT	1 cut(s)	690
BspFNI	CGCG	5 cut(s)	129, 225, 243, 570, 927
BspLI	GGNNCC	8 cut(s)	80, 133, 173, 187, 229, 810, 1000, 1321
BspMI	ACCTGC	2 cut(s)	400, 986
BspPI	GGATC	5 cut(s)	73, 86, 886, 930, 1245
BspT107I	GGYRCC	3 cut(s)	171, 185, 808
BspTI	CTTAAG	1 cut(s)	988
BsrDI	GCAATG	3 cut(s)	462, 486, 1267
BsrFI	RCCGGY	2 cut(s)	168, 494
BsrGI	TGTACA	1 cut(s)	1248
BsrI	ACTGG	3 cut(s)	869, 958, 1258
BssAI	RCCGGY	2 cut(s)	168, 494
BssECI	CCNNGG	2 cut(s)	434, 902
BssMI	GATC	7 cut(s)	78, 373, 687, 691, 878, 922, 1237
BssNI	GRCGYC	2 cut(s)	186, 718
BssSI	CACGAG	2 cut(s)	256, 293
Bst2BI	CACGAG	2 cut(s)	256, 293
Bst2UI	CCWGG	2 cut(s)	731, 903
Bst4CI	ACNGT	7 cut(s)	354, 586, 763, 944, 1066, 1095, 1217
BstACI	GRCGYC	2 cut(s)	186, 718
BstAFI	CTTAAG	1 cut(s)	988
BstAUI	TGTACA	1 cut(s)	1248
BstC8I	GCNNGC	2 cut(s)	166, 1085
BstDEI	CTNAG	4 cut(s)	699, 705, 969, 1326
BstF5I	GGATG	9 cut(s)	635, 677, 726, 898, 912, 979, 1030, 1178, 1318
BstFNI	CGCG	5 cut(s)	129, 225, 243, 570, 927
BstH2I	RGCGCY	1 cut(s)	189
BstHHI	GCGC	3 cut(s)	188, 225, 929
BstKTI	GATC	7 cut(s)	81, 376, 690, 694, 881, 925, 1240
BstMAI	GTCTC	1 cut(s)	708
BstMBI	GATC	7 cut(s)	78, 373, 687, 691, 878, 922, 1237
BstMCI	CGRYCG	1 cut(s)	342
BstMWI	GCNNNNNNNGC	6 cut(s)	194, 203, 295, 539, 715, 1151
BstNI	CCWGG	2 cut(s)	731, 903
BstNSI	RCATGY	3 cut(s)	484, 982, 1211
BstSCI	CCNGG	3 cut(s)	433, 729, 901
BstSLI	GKGCMC	2 cut(s)	811, 1323
BstUI	CGCG	5 cut(s)	129, 225, 243, 570, 927
BstV1I	GCAGC	3 cut(s)	301, 478, 1025
BstV2I	GAAGAC	1 cut(s)	202
BstX2I	RGATCY	2 cut(s)	78, 878
BstXI	CCANNNNNNTGG	1 cut(s)	572
BstYI	RGATCY	2 cut(s)	78, 878
Bsu15I	ATCGAT	1 cut(s)	690
BsuI	GTATCC	2 cut(s)	345, 388
BsuRI	GGCC	4 cut(s)	168, 564, 1087, 1321
BsuTUI	ATCGAT	1 cut(s)	690
BtgZI	GCGATG	2 cut(s)	110, 585
BtrI	CACGTC	1 cut(s)	665
BtsCI	GGATG	9 cut(s)	635, 677, 726, 898, 912, 979, 1030, 1178, 1318
BtsI	GCAGTG	1 cut(s)	930
BtsIMutI	CAGTG	3 cut(s)	930, 966, 1251
BveI	ACCTGC	2 cut(s)	400, 986
Cac8I	GCNNGC	2 cut(s)	166, 1085
CfoI	GCGC	3 cut(s)	188, 225, 929
Cfr10I	RCCGGY	2 cut(s)	168, 494
Cfr13I	GGNCC	5 cut(s)	166, 228, 1086, 1319, 1320
ClaI	ATCGAT	1 cut(s)	690
CseI	GACGC	3 cut(s)	249, 415, 707
Csp6I	GTAC	6 cut(s)	172, 370, 445, 498, 982, 1249
CviAII	CATG	4 cut(s)	481, 979, 1138, 1208
CviQI	GTAC	6 cut(s)	172, 370, 445, 498, 982, 1249
DdeI	CTNAG	4 cut(s)	699, 705, 969, 1326
DinI	GGCGCC	1 cut(s)	187
DpnI	GATC	7 cut(s)	80, 375, 689, 693, 880, 924, 1239
DpnII	GATC	7 cut(s)	78, 373, 687, 691, 878, 922, 1237
DrdI	GACNNNNNNGTC	1 cut(s)	457
DseDI	GACNNNNNNGTC	1 cut(s)	457
EaeI	YGGCCR	1 cut(s)	562
EciI	GGCGGA	4 cut(s)	29, 190, 261, 313
Eco24I	GRGCYC	1 cut(s)	1323
Eco47I	GGWCC	1 cut(s)	228
Eco57I	CTGAAG	1 cut(s)	522
Eco88I	CYCGRG	1 cut(s)	804
EcoO109I	RGGNCCY	2 cut(s)	1319, 1320
EcoRI	GAATTC	1 cut(s)	1111
EcoRII	CCWGG	2 cut(s)	729, 901
EcoT38I	GRGCYC	1 cut(s)	1323
EgeI	GGCGCC	1 cut(s)	187
EheI	GGCGCC	1 cut(s)	187
FaeI	CATG	4 cut(s)	484, 982, 1141, 1211
FaqI	GGGAC	4 cut(s)	32, 241, 445, 668
FatI	CATG	4 cut(s)	480, 978, 1137, 1207
FauI	CCCGC	3 cut(s)	22, 157, 218
FblI	GTMKAC	2 cut(s)	342, 596
Fnu4HI	GCNGC	8 cut(s)	8, 130, 204, 244, 290, 492, 1039, 1289
FokI	GGATG	9 cut(s)	642, 684, 713, 885, 919, 986, 1037, 1165, 1325
FriOI	GRGCYC	1 cut(s)	1323
Fsp4HI	GCNGC	8 cut(s)	8, 130, 204, 244, 290, 492, 1039, 1289
FspBI	CTAG	4 cut(s)	603, 915, 1277, 1351
GlaI	GCGC	3 cut(s)	187, 224, 928
GluI	GCNGC	8 cut(s)	8, 130, 204, 244, 290, 492, 1039, 1289
GsuI	CTGGAG	1 cut(s)	131
HaeII	RGCGCY	1 cut(s)	189
HaeIII	GGCC	4 cut(s)	168, 564, 1087, 1321
HapII	CCGG	8 cut(s)	169, 183, 338, 348, 434, 448, 495, 669
HgaI	GACGC	3 cut(s)	249, 415, 707
HhaI	GCGC	3 cut(s)	188, 225, 929
Hin1I	GRCGYC	2 cut(s)	186, 718
Hin1II	CATG	4 cut(s)	484, 982, 1141, 1211
Hin6I	GCGC	3 cut(s)	186, 223, 927
HinP1I	GCGC	3 cut(s)	186, 223, 927
HincII	GTYRAC	2 cut(s)	139, 343
HindII	GTYRAC	2 cut(s)	139, 343
HinfI	GANTC	3 cut(s)	63, 1004, 1031
HpaII	CCGG	8 cut(s)	169, 183, 338, 348, 434, 448, 495, 669
HphI	GGTGA	2 cut(s)	768, 1063
Hpy188I	TCNGA	4 cut(s)	193, 1003, 1110, 1117
Hpy188III	TCNNGA	5 cut(s)	256, 427, 920, 1008, 1241
Hpy99I	CGWCG	1 cut(s)	409
HpyAV	CCTTC	3 cut(s)	433, 1144, 1310
HpyCH4III	ACNGT	7 cut(s)	354, 586, 763, 944, 1066, 1095, 1217
HpyCH4IV	ACGT	2 cut(s)	646, 664
HpyCH4V	TGCA	8 cut(s)	455, 641, 797, 842, 995, 1041, 1075, 1137
HpyF10VI	GCNNNNNNNGC	6 cut(s)	194, 203, 295, 539, 715, 1151
HpyF3I	CTNAG	4 cut(s)	699, 705, 969, 1326
HpySE526I	ACGT	2 cut(s)	646, 664
Hsp92I	GRCGYC	2 cut(s)	186, 718
Hsp92II	CATG	4 cut(s)	484, 982, 1141, 1211
HspAI	GCGC	3 cut(s)	186, 223, 927
KasI	GGCGCC	1 cut(s)	185
KpnI	GGTACC	1 cut(s)	175
Kzo9I	GATC	7 cut(s)	78, 373, 687, 691, 878, 922, 1237
LmnI	GCTCC	5 cut(s)	42, 93, 137, 248, 1117
Lsp1109I	GCAGC	3 cut(s)	301, 478, 1025
LweI	GCATC	3 cut(s)	184, 420, 897
MaeI	CTAG	4 cut(s)	603, 915, 1277, 1351
MaeII	ACGT	2 cut(s)	646, 664
MaeIII	GTNAC	6 cut(s)	358, 774, 949, 964, 1196, 1346
MalI	GATC	7 cut(s)	80, 375, 689, 693, 880, 924, 1239
MboI	GATC	7 cut(s)	78, 373, 687, 691, 878, 922, 1237
MboII	GAAGA	2 cut(s)	202, 515
MflI	RGATCY	2 cut(s)	78, 878
MhlI	GDGCHC	3 cut(s)	300, 811, 1323
MlsI	TGGCCA	1 cut(s)	564
MluCI	AATT	7 cut(s)	46, 747, 1111, 1187, 1244, 1272, 1339
MluNI	TGGCCA	1 cut(s)	564
Mly113I	GGCGCC	1 cut(s)	186
MmeI	TCCRAC	1 cut(s)	115
Mox20I	TGGCCA	1 cut(s)	564
MroXI	GAANNNNTTC	2 cut(s)	507, 1154
MscI	TGGCCA	1 cut(s)	564
MseI	TTAA	5 cut(s)	56, 750, 765, 959, 989
MslI	CAYNNNNRTG	4 cut(s)	309, 384, 570, 942
Msp20I	TGGCCA	1 cut(s)	564
MspA1I	CMGCKG	1 cut(s)	1145
MspCI	CTTAAG	1 cut(s)	988
MspI	CCGG	8 cut(s)	169, 183, 338, 348, 434, 448, 495, 669
MspR9I	CCNGG	3 cut(s)	435, 731, 903
Mva1269I	GAATGC	1 cut(s)	1154
MvaI	CCWGG	2 cut(s)	731, 903
MvnI	CGCG	5 cut(s)	129, 225, 243, 570, 927
MwoI	GCNNNNNNNGC	6 cut(s)	194, 203, 295, 539, 715, 1151
NarI	GGCGCC	1 cut(s)	186
NciI	CCSGG	1 cut(s)	435
NdeII	GATC	7 cut(s)	78, 373, 687, 691, 878, 922, 1237
NlaIII	CATG	4 cut(s)	484, 982, 1141, 1211
NlaIV	GGNNCC	8 cut(s)	80, 133, 173, 187, 229, 810, 1000, 1321
NmuCI	GTSAC	5 cut(s)	358, 774, 964, 1196, 1346
NspI	RCATGY	3 cut(s)	484, 982, 1211
PctI	GAATGC	1 cut(s)	1154
PdmI	GAANNNNTTC	2 cut(s)	507, 1154
PfeI	GAWTC	3 cut(s)	63, 1004, 1031
Pfl23II	CGTACG	1 cut(s)	369
PfoI	TCCNGGA	1 cut(s)	729
PkrI	GCNGC	8 cut(s)	9, 131, 205, 245, 291, 493, 1040, 1290
PluTI	GGCGCC	1 cut(s)	189
Psp6I	CCWGG	2 cut(s)	729, 901
PspGI	CCWGG	2 cut(s)	729, 901
PspLI	CGTACG	1 cut(s)	369
PspN4I	GGNNCC	8 cut(s)	80, 133, 173, 187, 229, 810, 1000, 1321
PspOMI	GGGCCC	1 cut(s)	1319
PspPI	GGNCC	5 cut(s)	166, 228, 1086, 1319, 1320
PsuI	RGATCY	2 cut(s)	78, 878
PvuII	CAGCTG	1 cut(s)	1145
RsaI	GTAC	6 cut(s)	173, 371, 446, 499, 983, 1250
RsaNI	GTAC	6 cut(s)	172, 370, 445, 498, 982, 1249
RseI	CAYNNNNRTG	4 cut(s)	309, 384, 570, 942
SalI	GTCGAC	1 cut(s)	341
SaqAI	TTAA	5 cut(s)	56, 750, 765, 959, 989
SatI	GCNGC	8 cut(s)	8, 130, 204, 244, 290, 492, 1039, 1289
Sau3AI	GATC	7 cut(s)	78, 373, 687, 691, 878, 922, 1237
Sau96I	GGNCC	5 cut(s)	166, 228, 1086, 1319, 1320
ScrFI	CCNGG	3 cut(s)	435, 731, 903
SduI	GDGCHC	3 cut(s)	300, 811, 1323
SfaNI	GCATC	3 cut(s)	184, 420, 897
SfoI	GGCGCC	1 cut(s)	187
SinI	GGWCC	1 cut(s)	228
SmiMI	CAYNNNNRTG	4 cut(s)	309, 384, 570, 942
SmlI	CTYRAG	1 cut(s)	988
SmoI	CTYRAG	1 cut(s)	988
Sse9I	AATT	7 cut(s)	46, 747, 1111, 1187, 1244, 1272, 1339
SspDI	GGCGCC	1 cut(s)	185
SspMI	CTAG	4 cut(s)	603, 915, 1277, 1351
StyD4I	CCNGG	3 cut(s)	433, 729, 901
TaaI	ACNGT	7 cut(s)	354, 586, 763, 944, 1066, 1095, 1217
TaiI	ACGT	2 cut(s)	649, 667
TaqI	TCGA	6 cut(s)	61, 153, 213, 342, 690, 1158
TaqII	GACCGA	1 cut(s)	245
TasI	AATT	7 cut(s)	46, 747, 1111, 1187, 1244, 1272, 1339
TatI	WGTACW	1 cut(s)	1248
TauI	GCSGC	5 cut(s)	10, 132, 206, 246, 1291
TfiI	GAWTC	3 cut(s)	63, 1004, 1031
Tru1I	TTAA	5 cut(s)	56, 750, 765, 959, 989
Tru9I	TTAA	5 cut(s)	56, 750, 765, 959, 989
TscAI	CASTG	3 cut(s)	937, 973, 1258
TseFI	GTSAC	5 cut(s)	358, 774, 964, 1196, 1346
TseI	GCWGC	3 cut(s)	289, 491, 1038
Tsp45I	GTSAC	5 cut(s)	358, 774, 964, 1196, 1346
TspDTI	ATGAA	1 cut(s)	1329
TspGWI	ACGGA	3 cut(s)	91, 124, 252
TspRI	CASTG	3 cut(s)	937, 973, 1258
Vha464I	CTTAAG	1 cut(s)	988
VpaK11BI	GGWCC	1 cut(s)	228
XapI	RAATTY	4 cut(s)	46, 1111, 1187, 1272
XceI	RCATGY	3 cut(s)	484, 982, 1211
XmiI	GTMKAC	2 cut(s)	342, 596
XmnI	GAANNNNTTC	2 cut(s)	507, 1154
XspI	CTAG	4 cut(s)	603, 915, 1277, 1351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.