pycom15g08660

Retrotransposon gag protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0022195
Physical Location & Seq
Reverse (-)
5528436 .. 5529083
648 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 522 bp
ATGGCATATCGGATGCACATCGACGAAGAACGATATCGTTTGCATTTCGCAGATGACTTGTACACTATTCGCCAGAAGCCGAATGAGCCACTACAAAAGTATGCCGGCCGCTTCAGCCATAAGTATTCTCGCTGCGCTGAGGCAGATGACAAGACCGCCCTCAAAGCCTTCACGGCAGGCCTACGTGATTGTTTCTTCAAGTACATGATCAATGCCAACACTTGGAAGACTTACTCTGGGGTGATGGCACATGCTTACAACCACGCTTCCGCCGAAGCAAGGACATACCAAGGGAACCCCCATATGGTTAACCCCTATCAACAAGTGGGAAGTGGAAGTCAAGTTCTACCAAGTGAGGAGATCTTGGCCATTCAGACACCCATTGCATCATCTCCTGCCTCATTTAGCTACTCGCTAAGTCATCAACCGTATTTGTCTCTTGGTAAGAGGAAGAATTTTTACTCTCAGCAAGCTTATTACAACAAGAGGGATAAAATTTCGTATCAAGACAACCAGGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag

Protein Analysis

174

Amino Acids

19.96

Weight (kDa)

9.21

Isoelectric Point (pI)

43.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g26082
pyrus_communis pycom01g06370 pycom02g18840 pycom15g08660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 222
AciI CCGC 3 cut(s) 109, 156, 270
AcoI YGGCCR 2 cut(s) 106, 366
AcsI RAATTY 2 cut(s) 454, 495
AcuI CTGAAG 1 cut(s) 97
AfaI GTAC 2 cut(s) 62, 203
AfiI CCNNNNNNNGG 3 cut(s) 222, 279, 304
AgsI TTSAA 1 cut(s) 199
AjnI CCWGG 1 cut(s) 513
AloI GAACNNNNNNTCC 2 cut(s) 327, 359
AluBI AGCT 2 cut(s) 408, 473
AluI AGCT 2 cut(s) 408, 473
Alw26I GTCTC 1 cut(s) 441
AoxI GGCC 3 cut(s) 106, 178, 366
ApeKI GCWGC 1 cut(s) 132
ApoI RAATTY 2 cut(s) 454, 495
AspLEI GCGC 1 cut(s) 137
AsuHPI GGTGA 1 cut(s) 253
BalI TGGCCA 1 cut(s) 368
BarI GAAGNNNNNNTAC 2 cut(s) 443, 475
BbsI GAAGAC 1 cut(s) 233
BbvCI CCTCAGC 1 cut(s) 138
BbvI GCAGC 1 cut(s) 119
BccI CCATC 1 cut(s) 238
BceAI ACGGC 1 cut(s) 189
BciT130I CCWGG 1 cut(s) 515
BclI TGATCA 1 cut(s) 207
BcoDI GTCTC 1 cut(s) 441
BglI GCCNNNNNGGC 1 cut(s) 173
BglII AGATCT 1 cut(s) 360
BisI GCNGC 2 cut(s) 109, 133
BlsI GCNGC 2 cut(s) 110, 134
Bme1390I CCNGG 1 cut(s) 515
BmiI GGNNCC 1 cut(s) 296
BmrFI CCNGG 1 cut(s) 515
BmsI GCATC 2 cut(s) 3, 395
BpiI GAAGAC 1 cut(s) 233
Bpu10I CCTNAGC 1 cut(s) 138
BsaAI YACGTR 1 cut(s) 185
BsaBI GATNNNNATC 1 cut(s) 17
BsaJI CCNNGG 2 cut(s) 289, 514
Bsc4I CCNNNNNNNGG 3 cut(s) 222, 279, 304
Bse118I RCCGGY 1 cut(s) 104
Bse3DI GCAATG 1 cut(s) 381
Bse8I GATNNNNATC 1 cut(s) 17
BseBI CCWGG 1 cut(s) 515
BseDI CCNNGG 2 cut(s) 289, 514
BseGI GGATG 1 cut(s) 18
BseJI GATNNNNATC 1 cut(s) 17
BseLI CCNNNNNNNGG 3 cut(s) 222, 279, 304
BseMI GCAATG 1 cut(s) 381
BseMII CTCAG 2 cut(s) 129, 479
BseRI GAGGAG 1 cut(s) 371
BseX3I CGGCCG 1 cut(s) 106
BseXI GCAGC 1 cut(s) 119
Bsh1285I CGRYCG 1 cut(s) 109
BshFI GGCC 3 cut(s) 108, 180, 368
BsiEI CGRYCG 1 cut(s) 109
BsiSI CCGG 1 cut(s) 105
BslI CCNNNNNNNGG 3 cut(s) 222, 279, 304
BsmAI GTCTC 1 cut(s) 441
BsnI GGCC 3 cut(s) 108, 180, 368
Bsp1407I TGTACA 1 cut(s) 60
Bsp143I GATC 2 cut(s) 207, 360
BspACI CCGC 3 cut(s) 109, 156, 270
BspANI GGCC 3 cut(s) 108, 180, 368
BspCNI CTCAG 2 cut(s) 130, 478
BspLI GGNNCC 1 cut(s) 296
BsrDI GCAATG 1 cut(s) 381
BsrFI RCCGGY 1 cut(s) 104
BsrGI TGTACA 1 cut(s) 60
BssAI RCCGGY 1 cut(s) 104
BssECI CCNNGG 2 cut(s) 289, 514
BssMI GATC 2 cut(s) 207, 360
BssT1I CCWWGG 1 cut(s) 289
Bst2UI CCWGG 1 cut(s) 515
Bst4CI ACNGT 1 cut(s) 429
BstAUI TGTACA 1 cut(s) 60
BstBAI YACGTR 1 cut(s) 185
BstC8I GCNNGC 3 cut(s) 106, 178, 471
BstDEI CTNAG 3 cut(s) 138, 416, 465
BstF5I GGATG 1 cut(s) 18
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 2 cut(s) 210, 363
BstMAI GTCTC 1 cut(s) 441
BstMBI GATC 2 cut(s) 207, 360
BstMCI CGRYCG 1 cut(s) 109
BstMWI GCNNNNNNNGC 4 cut(s) 85, 114, 164, 173
BstNI CCWGG 1 cut(s) 515
BstNSI RCATGY 1 cut(s) 254
BstSCI CCNGG 1 cut(s) 513
BstV1I GCAGC 1 cut(s) 119
BstV2I GAAGAC 1 cut(s) 233
BstX2I RGATCY 1 cut(s) 360
BstYI RGATCY 1 cut(s) 360
BstZI CGGCCG 1 cut(s) 106
BsuRI GGCC 3 cut(s) 108, 180, 368
BtsCI GGATG 1 cut(s) 18
Cac8I GCNNGC 3 cut(s) 106, 178, 471
CfoI GCGC 1 cut(s) 137
Cfr10I RCCGGY 1 cut(s) 104
Csp6I GTAC 2 cut(s) 61, 202
CviAII CATG 2 cut(s) 205, 251
CviJI RGCY 9 cut(s) 79, 88, 108, 117, 167, 180, 368, 408, 473
CviKI_1 RGCY 9 cut(s) 79, 88, 108, 117, 167, 180, 368, 408, 473
CviQI GTAC 2 cut(s) 61, 202
DdeI CTNAG 3 cut(s) 138, 416, 465
DpnI GATC 2 cut(s) 209, 362
DpnII GATC 2 cut(s) 207, 360
EaeI YGGCCR 2 cut(s) 106, 366
EagI CGGCCG 1 cut(s) 106
EciI GGCGGA 1 cut(s) 259
EclXI CGGCCG 1 cut(s) 106
Eco130I CCWWGG 1 cut(s) 289
Eco147I AGGCCT 1 cut(s) 180
Eco32I GATATC 1 cut(s) 35
Eco52I CGGCCG 1 cut(s) 106
Eco57I CTGAAG 1 cut(s) 97
EcoRII CCWGG 1 cut(s) 513
EcoRV GATATC 1 cut(s) 35
EcoT14I CCWWGG 1 cut(s) 289
ErhI CCWWGG 1 cut(s) 289
FaeI CATG 2 cut(s) 208, 254
FaiI YATR 8 cut(s) 7, 102, 120, 206, 252, 286, 303, 305
FatI CATG 2 cut(s) 204, 250
FauNDI CATATG 1 cut(s) 303
FbaI TGATCA 1 cut(s) 207
Fnu4HI GCNGC 2 cut(s) 109, 133
FokI GGATG 1 cut(s) 25
Fsp4HI GCNGC 2 cut(s) 109, 133
GlaI GCGC 1 cut(s) 136
GluI GCNGC 2 cut(s) 109, 133
HaeIII GGCC 3 cut(s) 108, 180, 368
HapII CCGG 1 cut(s) 105
HhaI GCGC 1 cut(s) 137
Hin1II CATG 2 cut(s) 208, 254
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HindIII AAGCTT 1 cut(s) 471
HpaI GTTAAC 1 cut(s) 310
HpaII CCGG 1 cut(s) 105
HphI GGTGA 1 cut(s) 253
Hpy166II GTNNAC 2 cut(s) 63, 310
Hpy188I TCNGA 2 cut(s) 12, 375
Hpy188III TCNNGA 1 cut(s) 506
Hpy8I GTNNAC 2 cut(s) 63, 310
Hpy99I CGWCG 1 cut(s) 26
HpyAV CCTTC 1 cut(s) 178
HpyCH4III ACNGT 1 cut(s) 429
HpyCH4IV ACGT 1 cut(s) 184
HpyCH4V TGCA 3 cut(s) 16, 43, 386
HpyF10VI GCNNNNNNNGC 4 cut(s) 85, 114, 164, 173
HpyF3I CTNAG 3 cut(s) 138, 416, 465
HpySE526I ACGT 1 cut(s) 184
Hsp92II CATG 2 cut(s) 208, 254
HspAI GCGC 1 cut(s) 135
KroI GCCGGC 1 cut(s) 104
KroNI GCCGGC 1 cut(s) 106
Ksp22I TGATCA 1 cut(s) 207
KspAI GTTAAC 1 cut(s) 310
Kzo9I GATC 2 cut(s) 207, 360
LpnPI CCDG 6 cut(s) 86, 118, 162, 222, 408, 500
Lsp1109I GCAGC 1 cut(s) 119
LweI GCATC 2 cut(s) 3, 395
MaeII ACGT 1 cut(s) 184
MalI GATC 2 cut(s) 209, 362
MboI GATC 2 cut(s) 207, 360
MboII GAAGA 4 cut(s) 38, 187, 238, 463
MflI RGATCY 1 cut(s) 360
MlsI TGGCCA 1 cut(s) 368
MluCI AATT 2 cut(s) 454, 495
MluNI TGGCCA 1 cut(s) 368
MnlI CCTC 6 cut(s) 133, 170, 349, 409, 441, 480
Mox20I TGGCCA 1 cut(s) 368
MroNI GCCGGC 1 cut(s) 104
MscI TGGCCA 1 cut(s) 368
MseI TTAA 1 cut(s) 309
Msp20I TGGCCA 1 cut(s) 368
MspI CCGG 1 cut(s) 105
MspR9I CCNGG 1 cut(s) 515
MvaI CCWGG 1 cut(s) 515
MwoI GCNNNNNNNGC 4 cut(s) 85, 114, 164, 173
NaeI GCCGGC 1 cut(s) 106
NdeI CATATG 1 cut(s) 303
NdeII GATC 2 cut(s) 207, 360
NgoMIV GCCGGC 1 cut(s) 104
NlaIII CATG 2 cut(s) 208, 254
NlaIV GGNNCC 1 cut(s) 296
NspI RCATGY 1 cut(s) 254
PceI AGGCCT 1 cut(s) 180
PcsI WCGNNNNNNNCGW 1 cut(s) 270
PdiI GCCGGC 1 cut(s) 106
PflMI CCANNNNNTGG 1 cut(s) 222
PkrI GCNGC 2 cut(s) 110, 134
Ppu21I YACGTR 1 cut(s) 185
Psp6I CCWGG 1 cut(s) 513
PspGI CCWGG 1 cut(s) 513
PspN4I GGNNCC 1 cut(s) 296
PsuI RGATCY 1 cut(s) 360
RsaI GTAC 2 cut(s) 62, 203
RsaNI GTAC 2 cut(s) 61, 202
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 2 cut(s) 109, 133
Sau3AI GATC 2 cut(s) 207, 360
ScrFI CCNGG 1 cut(s) 515
SetI ASST 3 cut(s) 187, 410, 475
SfaNI GCATC 2 cut(s) 3, 395
Sse9I AATT 2 cut(s) 454, 495
SseBI AGGCCT 1 cut(s) 180
SsiI CCGC 3 cut(s) 109, 156, 270
StuI AGGCCT 1 cut(s) 180
StyD4I CCNGG 1 cut(s) 513
StyI CCWWGG 1 cut(s) 289
TaaI ACNGT 1 cut(s) 429
TaiI ACGT 1 cut(s) 187
TaqI TCGA 1 cut(s) 21
TasI AATT 2 cut(s) 454, 495
TatI WGTACW 2 cut(s) 60, 201
TauI GCSGC 1 cut(s) 111
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TseI GCWGC 1 cut(s) 132
Van91I CCANNNNNTGG 1 cut(s) 222
XapI RAATTY 2 cut(s) 454, 495
XceI RCATGY 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.