pycom15g08900

Aspartate aminotransferase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
5730010 .. 5733171
3162 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1383 bp
ATGCGCCCACAGTTAACATCACCCCACGCCCACAGTTCTTCAGTTTCTACGAGTAGTGATCGGAGGCTAAGCGCTCTGGTACGACACCTCGCTGCCGAAGATCAATCGTCCTCCGCCATGGATGCTCAGAACAACTCCATCTCTGCCTCGCCAGCTTCCGCCCACGCCAATTCCGTCTTCGCTCACGTTGTTCGCGCTCCCGAGGATCCAATCCTTGGGGTTACTGTTGCGTATAACAAAGATCCAAGCCCTCTGAAGTTGAATTTGGGTGTTGGCGCTTATCGAACCGAGGAGGGAAAACCACTTGTTCTTAATGTGGTGAGAAAAGCAGAACAGCTGCTTGTTAATGACATGTCTCGCGTTAAGGAATACCTTCCAATCGTTGGACTGGCAGATTTCAATAAGCTGAGCGCTAAGCTGATTCTTGGTGCTGACAGCCCTGCTATTCAAGAGAACCGTATTACTACCGTCCAATGTCTATCGGGAACTGGCTCATTGAGAGTTGGAGGTGAATTTTTGGCAAGGCATTATCATGAACGCACAATATACATACCCCTGCCGACATGGGGAAACCACACCAAAGTTTTCACTCTGGCAGGGTTGACTGTGAAAAGTTACCGGTATTATGATCCAGCAACTCGTGGCCTCAACTTCCAAGGCCTCTTGGAAGACCTTAGCTGTGCCCCAGCCGGAGCGATTGTTCTTCTCCATGCATGTGCTCATAACCCCACTGGTGTTGATCCAACCCTTGAGCAGTGGGAGCAGATCAGACAGCTTGTGAGATCAAGAGGATTATTACCGTTCTTCGACAGTGCTTATCAGGGTTTTGCTAGCGGAAGTTTGGATGGCGATGCACAGTCTGTTCGTAGGTTTGCTGCTGATGGTGGAGAGTGCCTTATTGCTCAAAGTTATGCAAAAAACATGGGTCTGTACGGTGAACGTGTTGGAGCCTTAAGCATTGTCTGCAAGAATGCTGATGTTGCAAGCAAGGTTGAGAGCCAACTGAAGCTTGTGATCAGGCCCATGTACTCGAACCCACCCATTCACGGTGCATCCATTGTAGCCACCATTCTCAAGGATAGGGACTTGTTTAACGAATGGACAGTTGAGCTGAAGGCCATGGCTGATCGTATCATCAGCATGCGGCATCAGCTTTTTGAATCCTTGCGTGCTAAGGGCACACCTGGTGACTGGAGCCACATCATCAAGCAAATCGGAATGTTTACCTTCACCGGATTGAACTCCGAGCAAGTTGCCTTCATGACTAAAGAGTACCATATTTACATGACATCCGACGGGAGGATTAGCATGGCGGGTCTGAGCTCAAGGACCGTCCCTCATCTTACCGAGGCAATACATGCCGCTGTTACTCGCGCTGCATAG

Protein Analysis

461

Amino Acids

50.11

Weight (kDa)

8.67

Isoelectric Point (pI)

42.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 86 - 452 4.6e-97 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012838)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 215, 383
AccII CGCG 3 cut(s) 195, 360, 1374
AciI CCGC 6 cut(s) 114, 159, 834, 1144, 1313, 1362
AclWI GGATC 5 cut(s) 200, 213, 236, 623, 734
AcsI RAATTY 2 cut(s) 262, 512
AcuI CTGAAG 4 cut(s) 24, 275, 1025, 1133
AdeI CACNNNGTG 1 cut(s) 1187
AfaI GTAC 4 cut(s) 81, 932, 1028, 1274
AfeI AGCGCT 2 cut(s) 73, 412
AfiI CCNNNNNNNGG 5 cut(s) 215, 383, 566, 1046, 1299
AflII CTTAAG 1 cut(s) 952
AflIII ACRYGT 2 cut(s) 351, 940
AgeI ACCGGT 1 cut(s) 618
AgsI TTSAA 5 cut(s) 262, 400, 449, 1160, 1240
AjnI CCWGG 1 cut(s) 1183
AjuI GAANNNNNNNTTGG 4 cut(s) 161, 193, 248, 280
AloI GAACNNNNNNTCC 2 cut(s) 684, 716
Alw21I GWGCWC 2 cut(s) 721, 1325
Alw26I GTCTC 1 cut(s) 360
AlwI GGATC 5 cut(s) 200, 213, 236, 623, 734
Ama87I CYCGRG 1 cut(s) 200
Aor51HI AGCGCT 2 cut(s) 73, 412
AoxI GGCC 4 cut(s) 643, 658, 1019, 1116
ApeKI GCWGC 4 cut(s) 92, 337, 875, 1376
ApoI RAATTY 2 cut(s) 262, 512
AsiGI ACCGGT 1 cut(s) 618
Asp700I GAANNNNTTC 1 cut(s) 372
AspLEI GCGC 6 cut(s) 6, 74, 197, 278, 413, 1376
AspS9I GGNCC 2 cut(s) 1020, 1329
AsuHPI GGTGA 6 cut(s) 12, 331, 521, 947, 1199, 1222
AsuNHI GCTAGC 1 cut(s) 830
AvaI CYCGRG 1 cut(s) 200
AvaII GGWCC 1 cut(s) 1329
BaeGI GKGCMC 2 cut(s) 685, 1181
BamHI GGATCC 1 cut(s) 205
BanII GRGCYC 1 cut(s) 1325
BauI CACGAG 1 cut(s) 639
BbsI GAAGAC 2 cut(s) 169, 675
Bbv12I GWGCWC 2 cut(s) 721, 1325
BbvI GCAGC 4 cut(s) 79, 324, 862, 1363
BccI CCATC 3 cut(s) 146, 839, 875
BcgI CGANNNNNNTGC 2 cut(s) 1235, 1269
BciT130I CCWGG 1 cut(s) 1185
BclI TGATCA 1 cut(s) 1014
BcoDI GTCTC 1 cut(s) 360
BfaI CTAG 1 cut(s) 831
BfoI RGCGCY 3 cut(s) 75, 279, 414
BfrI CTTAAG 1 cut(s) 952
BisI GCNGC 6 cut(s) 93, 338, 876, 1145, 1362, 1377
BlpI GCTNAGC 3 cut(s) 68, 407, 414
BlsI GCNGC 6 cut(s) 94, 339, 877, 1146, 1363, 1378
Bme1390I CCNGG 1 cut(s) 1185
Bme18I GGWCC 1 cut(s) 1329
BmeT110I CYCGRG 1 cut(s) 200
BmgT120I GGNCC 2 cut(s) 1020, 1329
BmiI GGNNCC 3 cut(s) 207, 949, 1196
BmrFI CCNGG 1 cut(s) 1185
BmsI GCATC 4 cut(s) 112, 841, 1061, 1156
BmtI GCTAGC 1 cut(s) 834
BpiI GAAGAC 2 cut(s) 169, 675
BpmI CTGGAG 1 cut(s) 1213
Bpu10I CCTNAGC 2 cut(s) 674, 1173
Bpu1102I GCTNAGC 3 cut(s) 68, 407, 414
BpuEI CTTGAG 3 cut(s) 770, 1058, 1309
BsaJI CCNNGG 7 cut(s) 117, 201, 214, 288, 655, 1119, 1347
BsaWI WCCGGW 2 cut(s) 618, 1232
BsaXI ACNNNNNCTCC 2 cut(s) 684, 714
Bsc4I CCNNNNNNNGG 5 cut(s) 215, 383, 566, 1046, 1299
Bse118I RCCGGY 1 cut(s) 618
Bse1I ACTGG 4 cut(s) 393, 493, 736, 1196
BseBI CCWGG 1 cut(s) 1185
BseDI CCNNGG 7 cut(s) 117, 201, 214, 288, 655, 1119, 1347
BseGI GGATG 4 cut(s) 127, 850, 1052, 1289
BseLI CCNNNNNNNGG 5 cut(s) 215, 383, 566, 1046, 1299
BseMII CTCAG 3 cut(s) 140, 398, 1310
BseNI ACTGG 4 cut(s) 393, 493, 736, 1196
BseRI GAGGAG 1 cut(s) 305
BseSI GKGCMC 2 cut(s) 685, 1181
BseXI GCAGC 4 cut(s) 79, 324, 862, 1363
BseYI CCCAGC 1 cut(s) 685
Bsh1236I CGCG 3 cut(s) 195, 360, 1374
BshFI GGCC 4 cut(s) 645, 660, 1021, 1118
BshTI ACCGGT 1 cut(s) 618
BsiHKAI GWGCWC 2 cut(s) 721, 1325
BsiHKCI CYCGRG 1 cut(s) 200
BsiSI CCGG 3 cut(s) 619, 690, 1233
BslFI GGGAC 2 cut(s) 1097, 1319
BslI CCNNNNNNNGG 5 cut(s) 215, 383, 566, 1046, 1299
BsmAI GTCTC 1 cut(s) 360
BsmFI GGGAC 2 cut(s) 1097, 1319
BsmI GAATGC 1 cut(s) 976
BsnI GGCC 4 cut(s) 645, 660, 1021, 1118
BsoBI CYCGRG 1 cut(s) 200
Bsp1286I GDGCHC 4 cut(s) 685, 721, 1181, 1325
Bsp1720I GCTNAGC 3 cut(s) 68, 407, 414
Bsp19I CCATGG 2 cut(s) 117, 1119
BspACI CCGC 6 cut(s) 114, 159, 834, 1144, 1313, 1362
BspANI GGCC 4 cut(s) 645, 660, 1021, 1118
BspCNI CTCAG 3 cut(s) 139, 399, 1311
BspFNI CGCG 3 cut(s) 195, 360, 1374
BspHI TCATGA 2 cut(s) 532, 1260
BspLI GGNNCC 3 cut(s) 207, 949, 1196
BspOI GCTAGC 1 cut(s) 834
BspPI GGATC 5 cut(s) 200, 213, 236, 623, 734
BspTI CTTAAG 1 cut(s) 952
BsrFI RCCGGY 1 cut(s) 618
BsrI ACTGG 4 cut(s) 393, 493, 736, 1196
BssAI RCCGGY 1 cut(s) 618
BssECI CCNNGG 7 cut(s) 117, 201, 214, 288, 655, 1119, 1347
BssSI CACGAG 1 cut(s) 639
BssT1I CCWWGG 4 cut(s) 117, 214, 655, 1119
Bst2BI CACGAG 1 cut(s) 639
Bst2UI CCWGG 1 cut(s) 1185
BstAFI CTTAAG 1 cut(s) 952
BstAPI GCANNNNNTGC 2 cut(s) 963, 1358
BstC8I GCNNGC 5 cut(s) 153, 832, 985, 1142, 1170
BstDEI CTNAG 7 cut(s) 68, 126, 407, 414, 674, 1173, 1319
BstDSI CCRYGG 2 cut(s) 117, 1119
BstF5I GGATG 4 cut(s) 127, 850, 1052, 1289
BstFNI CGCG 3 cut(s) 195, 360, 1374
BstH2I RGCGCY 3 cut(s) 75, 279, 414
BstHHI GCGC 6 cut(s) 6, 74, 197, 278, 413, 1376
BstMAI GTCTC 1 cut(s) 360
BstMWI GCNNNNNNNGC 7 cut(s) 122, 152, 760, 963, 980, 1150, 1358
BstNI CCWGG 1 cut(s) 1185
BstNSI RCATGY 4 cut(s) 355, 717, 1144, 1361
BstSCI CCNGG 1 cut(s) 1183
BstSLI GKGCMC 2 cut(s) 685, 1181
BstUI CGCG 3 cut(s) 195, 360, 1374
BstV1I GCAGC 4 cut(s) 79, 324, 862, 1363
BstV2I GAAGAC 2 cut(s) 169, 675
BstX2I RGATCY 2 cut(s) 205, 241
BstYI RGATCY 2 cut(s) 205, 241
BsuRI GGCC 4 cut(s) 645, 660, 1021, 1118
BtgI CCRYGG 2 cut(s) 117, 1119
BtgZI GCGATG 1 cut(s) 864
BtsCI GGATG 4 cut(s) 127, 850, 1052, 1289
BtsI GCAGTG 1 cut(s) 761
BtsIMutI CAGTG 3 cut(s) 729, 761, 817
Cac8I GCNNGC 5 cut(s) 153, 832, 985, 1142, 1170
CciI TCATGA 2 cut(s) 532, 1260
CfoI GCGC 6 cut(s) 6, 74, 197, 278, 413, 1376
Cfr10I RCCGGY 1 cut(s) 618
Cfr13I GGNCC 2 cut(s) 1020, 1329
CsiI ACCWGGT 1 cut(s) 1183
Csp6I GTAC 4 cut(s) 80, 931, 1027, 1273
CspAI ACCGGT 1 cut(s) 618
CspCI CAANNNNNGTGG 2 cut(s) 718, 753
CviQI GTAC 4 cut(s) 80, 931, 1027, 1273
DdeI CTNAG 7 cut(s) 68, 126, 407, 414, 674, 1173, 1319
DraIII CACNNNGTG 1 cut(s) 1187
EciI GGCGGA 2 cut(s) 103, 148
Ecl136II GAGCTC 1 cut(s) 1323
Eco130I CCWWGG 4 cut(s) 117, 214, 655, 1119
Eco147I AGGCCT 1 cut(s) 660
Eco24I GRGCYC 1 cut(s) 1325
Eco47I GGWCC 1 cut(s) 1329
Eco47III AGCGCT 2 cut(s) 73, 412
Eco53kI GAGCTC 1 cut(s) 1323
Eco57I CTGAAG 4 cut(s) 24, 275, 1025, 1133
Eco88I CYCGRG 1 cut(s) 200
EcoICRI GAGCTC 1 cut(s) 1323
EcoRII CCWGG 1 cut(s) 1183
EcoT14I CCWWGG 4 cut(s) 117, 214, 655, 1119
EcoT22I ATGCAT 1 cut(s) 715
EcoT38I GRGCYC 1 cut(s) 1325
ErhI CCWWGG 4 cut(s) 117, 214, 655, 1119
FaqI GGGAC 2 cut(s) 1097, 1319
FauI CCCGC 1 cut(s) 1306
FbaI TGATCA 1 cut(s) 1014
Fnu4HI GCNGC 6 cut(s) 93, 338, 876, 1145, 1362, 1377
FokI GGATG 4 cut(s) 134, 857, 1039, 1276
FriOI GRGCYC 1 cut(s) 1325
Fsp4HI GCNGC 6 cut(s) 93, 338, 876, 1145, 1362, 1377
FspBI CTAG 1 cut(s) 831
GlaI GCGC 6 cut(s) 5, 73, 196, 277, 412, 1375
GluI GCNGC 6 cut(s) 93, 338, 876, 1145, 1362, 1377
GsaI CCCAGC 1 cut(s) 689
GsuI CTGGAG 1 cut(s) 1213
HaeII RGCGCY 3 cut(s) 75, 279, 414
HaeIII GGCC 4 cut(s) 645, 660, 1021, 1118
HapII CCGG 3 cut(s) 619, 690, 1233
HhaI GCGC 6 cut(s) 6, 74, 197, 278, 413, 1376
Hin6I GCGC 6 cut(s) 4, 72, 195, 276, 411, 1374
HinP1I GCGC 6 cut(s) 4, 72, 195, 276, 411, 1374
HincII GTYRAC 2 cut(s) 15, 603
HindII GTYRAC 2 cut(s) 15, 603
HindIII AAGCTT 1 cut(s) 1007
HinfI GANTC 2 cut(s) 421, 1160
HpaI GTTAAC 1 cut(s) 15
HpaII CCGG 3 cut(s) 619, 690, 1233
HphI GGTGA 6 cut(s) 12, 331, 521, 947, 1199, 1222
Hpy166II GTNNAC 4 cut(s) 15, 603, 938, 1224
Hpy188I TCNGA 8 cut(s) 63, 129, 255, 770, 1217, 1246, 1294, 1320
Hpy188III TCNNGA 6 cut(s) 200, 449, 483, 533, 786, 1261
Hpy8I GTNNAC 4 cut(s) 15, 603, 938, 1224
Hpy99I CGWCG 1 cut(s) 1298
HpyAV CCTTC 4 cut(s) 383, 1108, 1237, 1267
HpyCH4IV ACGT 2 cut(s) 186, 940
HpyCH4V TGCA 7 cut(s) 713, 854, 914, 966, 983, 1052, 1379
HpyF10VI GCNNNNNNNGC 7 cut(s) 122, 152, 760, 963, 980, 1150, 1358
HpyF3I CTNAG 7 cut(s) 68, 126, 407, 414, 674, 1173, 1319
HpySE526I ACGT 2 cut(s) 186, 940
HspAI GCGC 6 cut(s) 4, 72, 195, 276, 411, 1374
Ksp22I TGATCA 1 cut(s) 1014
KspAI GTTAAC 1 cut(s) 15
LmnI GCTCC 5 cut(s) 202, 692, 760, 947, 1194
Lsp1109I GCAGC 4 cut(s) 79, 324, 862, 1363
LweI GCATC 4 cut(s) 112, 841, 1061, 1156
MabI ACCWGGT 1 cut(s) 1183
MaeI CTAG 1 cut(s) 831
MaeII ACGT 2 cut(s) 186, 940
MaeIII GTNAC 4 cut(s) 220, 614, 1187, 1366
MboII GAAGA 6 cut(s) 30, 110, 169, 680, 695, 796
MflI RGATCY 2 cut(s) 205, 241
MhlI GDGCHC 4 cut(s) 685, 721, 1181, 1325
MluCI AATT 3 cut(s) 169, 262, 512
MmeI TCCRAC 5 cut(s) 364, 484, 767, 925, 1317
Mph1103I ATGCAT 1 cut(s) 715
MroXI GAANNNNTTC 1 cut(s) 372
MseI TTAA 6 cut(s) 14, 312, 345, 363, 953, 1092
MslI CAYNNNNRTG 3 cut(s) 531, 714, 1139
MspA1I CMGCKG 2 cut(s) 337, 1364
MspCI CTTAAG 1 cut(s) 952
MspI CCGG 3 cut(s) 619, 690, 1233
MspR9I CCNGG 1 cut(s) 1185
Mva1269I GAATGC 1 cut(s) 976
MvaI CCWGG 1 cut(s) 1185
MvnI CGCG 3 cut(s) 195, 360, 1374
MwoI GCNNNNNNNGC 7 cut(s) 122, 152, 760, 963, 980, 1150, 1358
NcoI CCATGG 2 cut(s) 117, 1119
NheI GCTAGC 1 cut(s) 830
NlaIV GGNNCC 3 cut(s) 207, 949, 1196
NmuCI GTSAC 1 cut(s) 1187
NsiI ATGCAT 1 cut(s) 715
NspI RCATGY 4 cut(s) 355, 717, 1144, 1361
PaeI GCATGC 1 cut(s) 1144
PagI TCATGA 2 cut(s) 532, 1260
PceI AGGCCT 1 cut(s) 660
PciI ACATGT 1 cut(s) 351
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PctI GAATGC 1 cut(s) 976
PdmI GAANNNNTTC 1 cut(s) 372
PfeI GAWTC 2 cut(s) 421, 1160
PflMI CCANNNNNTGG 2 cut(s) 215, 383
PinAI ACCGGT 1 cut(s) 618
PkrI GCNGC 6 cut(s) 94, 339, 877, 1146, 1363, 1378
PscI ACATGT 1 cut(s) 351
Psp124BI GAGCTC 1 cut(s) 1325
Psp6I CCWGG 1 cut(s) 1183
PspFI CCCAGC 1 cut(s) 685
PspGI CCWGG 1 cut(s) 1183
PspN4I GGNNCC 3 cut(s) 207, 949, 1196
PspPI GGNCC 2 cut(s) 1020, 1329
PsuI RGATCY 2 cut(s) 205, 241
PvuII CAGCTG 1 cut(s) 337
RsaI GTAC 4 cut(s) 81, 932, 1028, 1274
RsaNI GTAC 4 cut(s) 80, 931, 1027, 1273
RseI CAYNNNNRTG 3 cut(s) 531, 714, 1139
SacI GAGCTC 1 cut(s) 1325
SaqAI TTAA 6 cut(s) 14, 312, 345, 363, 953, 1092
SatI GCNGC 6 cut(s) 93, 338, 876, 1145, 1362, 1377
Sau96I GGNCC 2 cut(s) 1020, 1329
ScrFI CCNGG 1 cut(s) 1185
SduI GDGCHC 4 cut(s) 685, 721, 1181, 1325
SexAI ACCWGGT 1 cut(s) 1183
SfaNI GCATC 4 cut(s) 112, 841, 1061, 1156
SinI GGWCC 1 cut(s) 1329
SmiMI CAYNNNNRTG 3 cut(s) 531, 714, 1139
SmlI CTYRAG 4 cut(s) 749, 952, 1073, 1324
SmoI CTYRAG 4 cut(s) 749, 952, 1073, 1324
SphI GCATGC 1 cut(s) 1144
Sse9I AATT 3 cut(s) 169, 262, 512
SseBI AGGCCT 1 cut(s) 660
SsiI CCGC 6 cut(s) 114, 159, 834, 1144, 1313, 1362
SspMI CTAG 1 cut(s) 831
SstI GAGCTC 1 cut(s) 1325
StuI AGGCCT 1 cut(s) 660
StyD4I CCNGG 1 cut(s) 1183
StyI CCWWGG 4 cut(s) 117, 214, 655, 1119
TaiI ACGT 2 cut(s) 189, 943
TaqI TCGA 3 cut(s) 283, 807, 1031
TasI AATT 3 cut(s) 169, 262, 512
TatI WGTACW 1 cut(s) 1026
TauI GCSGC 2 cut(s) 1147, 1364
TfiI GAWTC 2 cut(s) 421, 1160
Tru1I TTAA 6 cut(s) 14, 312, 345, 363, 953, 1092
Tru9I TTAA 6 cut(s) 14, 312, 345, 363, 953, 1092
TscAI CASTG 3 cut(s) 736, 761, 817
TseFI GTSAC 1 cut(s) 1187
TseI GCWGC 4 cut(s) 92, 337, 875, 1376
Tsp45I GTSAC 1 cut(s) 1187
TspDTI ATGAA 2 cut(s) 549, 1249
TspGWI ACGGA 1 cut(s) 163
TspRI CASTG 3 cut(s) 736, 761, 817
Van91I CCANNNNNTGG 2 cut(s) 215, 383
Vha464I CTTAAG 1 cut(s) 952
VpaK11BI GGWCC 1 cut(s) 1329
XapI RAATTY 2 cut(s) 262, 512
XceI RCATGY 4 cut(s) 355, 717, 1144, 1361
XmnI GAANNNNTTC 1 cut(s) 372
XspI CTAG 1 cut(s) 831
Zsp2I ATGCAT 1 cut(s) 715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.