Rorug06G0344000
MYB Family

Coiled-coil domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000447
Physical Location & Seq
Reverse (-)
49545917 .. 49551371
5455 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0344000.1

Sequence Viewer

Length: 1869 bp
ATGAAAGATTATAGAAGAAGCTCATGCAAGGTTTTTGATATGTTTGCAAACATCAACAACATGCCAATCTCTGATGTTTCTAGTGATCTTACTGTGGAGATAGCAGCATCAAGCTTTGCCCTTCACAAGTTCCCTCTAGTTTCTCGGAGTGGAAAGATTCGGAAACTGTTACTTGAAGCAAAAGATTCAAAAGTTTCGCGTGTGATTCTTCCATCTGTTCCGGGCGGAGCAGAGGCATTTGAGCTAGCTGCAAAGTTCTGTTATGGCCATAATATTGAGATCACACAAGCAAATGTTGCCTTGCTCCGTTGCACAGCTCACTTTCTTGAAATGACGGAAGAGTATGCTGAGAAGAACCTGGAAACAAGAACTGAAGCTTATCTAAAGGATATGGTGTTCCCAAACATATCAAAATCAATAGCAGTTCTTCATCGTTGCGAAGCACTCTTGCCTGCAGCAGAAGAAACTAACCTGGTTAGCAGGCTCATCAATGCAATCGCAAACAATGCGTGCAAAGAGCAGCTCACTTCTGGCTTACTGAAACTTGACCACAACTTTCCTTCAAAAGTAGCTACTATGGAACCTGAAACGCCCTCGGATTGGTGGGGAAAAGCGCTTTCGGTGCTTAGTCTTGACTTCTTCCAGAGGGTTTTATCTGCAGTGAAAACCAAGGGTCTTAAACAGGATATGATCAGCAAAATTTTGATAAATTACGCCCATAACTCTCTTCAAGGTCTTGTTGTAAGGGATGCGCAATTGGTCAAAGGAAGTCTCTTCGATTTAGAACTGCAAAAGAAACAAAGGGTCATTGTTGAAGCTATTGTTAGTTTACTACCAACACAATCAAGGAAGAGTCCAGTTCCAATGGCATTTCTTTCGAGTTTGTTGAAAACTGCAATTGCAGCATCAGCATCCACTTCATGCAGATCTGATTTGGAGAGGCGGATTGGTTTGCAGCTGGATCAGGCAATTCTTGAAGACATCCTCATTCCTACAAACTCACATGGAAACAACCACAGCACAATTTATGATGCCGACACTATAGTGAGAATCTTCTCCATATTTTTGAACTTGGATGAGGATGATGAAGATGATACTAATCTGTTAAGAGATGAAAGTCAAATGGTTTATGATTTCGACAGCCCTGGATCTCCTAAACAAAGTTCAATCTTGAAGGTCTCTAAGTTACTGGACAATTATCTTGCCGAAGTTGCATTGGACTCAAACTTGTCACCATCAAAGTTCACAGCTCTAGCAGAACTACTTCCAGACCATGCACGAATAGTAAGTGATGGACTGTACAGAGCTGTGGATATCTTCCTCAAAGTTCACCCAAACATGAAGGACTCTGAAAGGTACCGGCTTTGCAAAACCATAGACTGCCAGAAACTATCCCAAGAAGCCTGCAGTCATGCAGCACAGAATGAAAGGCTACCGGTACAGATGGCAGTTCAGGTCCTATACTTTGAGCAAATCAGGCTGAGGAATGCAATGAATGGTGGCCACAATCAGTTCTTCTTTGGCGCAATTAATGGCACTCAATTCCCTCAAAGATCAGGCAGTGGTGCTGGCAGTGGAGCTATTTCCCCTAGAGACAACTACGCATCAGTTCGGAGAGAGAATCGAGAGCTGAAGCTTGAAGTCGCTAGAATGAGAATGAGGCTGACAGACTTGGAAAAAGATCATGTCTCTATGAAGCAAGAGCTTGTTAAGACACACCCTGCAAATAAGTTGTTCAAATCCTTCACCAAAAAATTGGGGAAGATCAATGCATTGTTCCGGATTAATAGTATCAAGACCTTGGGGGGTAAGGCGCATTCGGAGAGCAGATTCCCGTTTCAGAAGCGAAGGCGCCATTCAGTTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF814

Protein Analysis

622

Amino Acids

69.64

Weight (kDa)

9.02

Isoelectric Point (pI)

47.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB PF00651 27 - 113 9.3e-06 BTB/POZ domain
NPH3 PF03000 200 - 469 1.3e-89 NPH3 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000447)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25737 AT2G25737
fragaria_vesca FvH4_2g36080 FvH4_2g36080 FvH4_6g31610 FvH4_6g31610 FvH4_6g31610 FvH4_6g31610 FvH4_6g31650 FvH4_6g31650 FvH4_6g31650 FvH4_6g31850 FvH4_6g31850
malus_domestica MD08G1118000.v1.1 MD09G1210100.v1.1 MD09G1210300.v1.1 MD15G1097500.v1.1 MD17G1190800.v1.1 MD17G1192400.v1.1
prunus_persica Prupe.1G452300_v2.0.a1 Prupe.1G452300_v2.0.a1 Prupe.3G066100_v2.0.a1 Prupe.3G068200_v2.0.a1 Prupe.3G068200_v2.0.a1 Prupe.3G068200_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068400_v2.0.a1 Prupe.3G068400_v2.0.a1 Prupe.3G068400_v2.0.a1 Prupe.3G068400_v2.0.a1
pyrus_communis pycom08g09860 pycom09g12740 pycom09g12770 pycom15g08940 pycom17g19800 pycom17g19910
rosa_chinensis RchiOBHm_Chr2g0138671 RchiOBHm_Chr2g0138691 RchiOBHm_Chr2g0139111 RchiOBHm_Chr2g0139121 RchiOBHm_Chr2g0139161 RchiOBHm_Chr6g0305781 RchiOBHm_Chr7g0240101
rosa_laevigata RLG00000010859 RLG00000019753 RLG00000019756 RLG00000019792
rosa_multiflora Rmu_sc0001803.1_g000021 Rmu_sc0001803.1_g000022 Rmu_sc0001803.1_g000024 Rmu_sc0006243.1_g000011 Rmu_sc0007053.1_g000009 Rmu_sc0033335.1_g000001 Rmu_ssc0000210.1_g000006
rosa_roxburghii Rroxscaffold_2G00105610 Rroxscaffold_2G00106000 Rroxscaffold_2G00106020 Rroxscaffold_7G00162350
rosa_rugosa Rorug02G0352100 Rorug02G0352300 Rorug02G0352400 Rorug02G0354900 Rorug02G0355200 Rorug06G0344000
rosa_samantha Rh2AG401900 Rh2AG404900 Rh2AG405300 Rh2BG405700 Rh2BG405900 Rh2BG415400 Rh2BG415700 Rh2CG387900 Rh2CG388100 Rh2CG391200 Rh2CG391400 Rh2DG421800 Rh2DG422000 Rh2DG424700 Rh2DG424800 Rh2DG425100 Rh6AG455500 Rh6BG445600 Rh6CG469500 Rh6DG456200 Rh7DG471900
rosa_wichuraiana Rw2G032650 Rw2G032670 Rw2G033100 Rw6G039740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 753
Acc65I GGTACC 1 cut(s) 1356
AccB1I GGYRCC 2 cut(s) 1356, 1851
AccII CGCG 1 cut(s) 199
AccIII TCCGGA 1 cut(s) 1779
AciI CCGC 2 cut(s) 225, 943
AclWI GGATC 2 cut(s) 969, 1156
AcoI YGGCCR 2 cut(s) 265, 1501
AcsI RAATTY 1 cut(s) 699
AcuI CTGAAG 2 cut(s) 393, 1652
AcyI GRCGYC 1 cut(s) 1852
AfaI GTAC 3 cut(s) 1301, 1358, 1440
AfeI AGCGCT 1 cut(s) 615
AfiI CCNNNNNNNGG 1 cut(s) 600
AgeI ACCGGT 1 cut(s) 1435
AjnI CCWGG 3 cut(s) 357, 471, 1144
AleI CACNNNNGTG 1 cut(s) 1043
AloI GAACNNNNNNTCC 2 cut(s) 380, 412
Alw26I GTCTC 4 cut(s) 776, 1183, 1587, 1693
AlwI GGATC 2 cut(s) 969, 1156
Aor13HI TCCGGA 1 cut(s) 1779
Aor51HI AGCGCT 1 cut(s) 615
AoxI GGCC 2 cut(s) 265, 1501
ApeKI GCWGC 7 cut(s) 104, 248, 455, 520, 902, 955, 1415
ApoI RAATTY 1 cut(s) 699
AseI ATTAAT 2 cut(s) 1530, 1785
AsiGI ACCGGT 1 cut(s) 1435
Asp700I GAANNNNTTC 1 cut(s) 1263
Asp718I GGTACC 1 cut(s) 1356
AspLEI GCGC 5 cut(s) 616, 754, 1526, 1816, 1854
AspS9I GGNCC 1 cut(s) 1456
AsuC2I CCSGG 1 cut(s) 222
AsuHPI GGTGA 3 cut(s) 1224, 1322, 1738
AsuNHI GCTAGC 1 cut(s) 244
AvaII GGWCC 1 cut(s) 1456
BalI TGGCCA 2 cut(s) 267, 1503
BanI GGYRCC 2 cut(s) 1356, 1851
BbsI GAAGAC 1 cut(s) 984
BbvCI CCTCAGC 1 cut(s) 1481
BbvI GCAGC 7 cut(s) 116, 235, 467, 532, 914, 967, 1427
BccI CCATC 4 cut(s) 220, 1243, 1286, 1438
BcgI CGANNNNNNTGC 2 cut(s) 858, 892
BciT130I CCWGG 3 cut(s) 359, 473, 1146
BclI TGATCA 1 cut(s) 690
BcnI CCSGG 1 cut(s) 222
BcoDI GTCTC 4 cut(s) 776, 1183, 1587, 1693
BfaI CTAG 6 cut(s) 81, 137, 245, 1253, 1590, 1647
BfmI CTRYAG 4 cut(s) 453, 657, 1041, 1405
BfoI RGCGCY 2 cut(s) 617, 1855
BglII AGATCT 1 cut(s) 926
BisI GCNGC 7 cut(s) 105, 249, 456, 521, 903, 956, 1416
BlsI GCNGC 7 cut(s) 106, 250, 457, 522, 904, 957, 1417
Bme1390I CCNGG 4 cut(s) 222, 359, 473, 1146
Bme18I GGWCC 1 cut(s) 1456
BmgT120I GGNCC 1 cut(s) 1456
BmiI GGNNCC 3 cut(s) 582, 1358, 1853
BmrFI CCNGG 4 cut(s) 222, 359, 473, 1146
BmsI GCATC 6 cut(s) 116, 739, 914, 920, 1021, 1613
BmtI GCTAGC 1 cut(s) 248
BpiI GAAGAC 1 cut(s) 984
Bpu10I CCTNAGC 1 cut(s) 1481
BpuMI CCSGG 1 cut(s) 222
BsaBI GATNNNNATC 1 cut(s) 1098
BsaHI GRCGYC 1 cut(s) 1852
BsaI GGTCTC 1 cut(s) 1183
BsaJI CCNNGG 4 cut(s) 594, 669, 1144, 1800
BsaWI WCCGGW 2 cut(s) 1435, 1779
Bsc4I CCNNNNNNNGG 1 cut(s) 600
Bse118I RCCGGY 2 cut(s) 1359, 1435
Bse1I ACTGG 2 cut(s) 857, 1194
Bse3DI GCAATG 1 cut(s) 1497
Bse8I GATNNNNATC 1 cut(s) 1098
BseAI TCCGGA 1 cut(s) 1779
BseBI CCWGG 3 cut(s) 359, 473, 1146
BseDI CCNNGG 4 cut(s) 594, 669, 1144, 1800
BseGI GGATG 5 cut(s) 754, 911, 981, 1081, 1087
BseJI GATNNNNATC 1 cut(s) 1098
BseLI CCNNNNNNNGG 1 cut(s) 600
BseMI GCAATG 1 cut(s) 1497
BseMII CTCAG 2 cut(s) 339, 1472
BseNI ACTGG 2 cut(s) 857, 1194
BseXI GCAGC 7 cut(s) 116, 235, 467, 532, 914, 967, 1427
Bsh1236I CGCG 1 cut(s) 199
BshFI GGCC 2 cut(s) 267, 1503
BshNI GGYRCC 2 cut(s) 1356, 1851
BshTI ACCGGT 1 cut(s) 1435
BsiSI CCGG 4 cut(s) 221, 1360, 1436, 1780
BslI CCNNNNNNNGG 1 cut(s) 600
BsmAI GTCTC 4 cut(s) 776, 1183, 1587, 1693
BsmI GAATGC 2 cut(s) 1492, 1816
BsnI GGCC 2 cut(s) 267, 1503
Bso31I GGTCTC 1 cut(s) 1183
Bsp13I TCCGGA 1 cut(s) 1779
Bsp1407I TGTACA 1 cut(s) 1299
Bsp143I GATC 9 cut(s) 85, 279, 690, 926, 961, 1148, 1553, 1681, 1764
BspACI CCGC 2 cut(s) 225, 943
BspANI GGCC 2 cut(s) 267, 1503
BspCNI CTCAG 2 cut(s) 340, 1473
BspEI TCCGGA 1 cut(s) 1779
BspFNI CGCG 1 cut(s) 199
BspHI TCATGA 1 cut(s) 1865
BspLI GGNNCC 3 cut(s) 582, 1358, 1853
BspMAI CTGCAG 3 cut(s) 457, 661, 1409
BspOI GCTAGC 1 cut(s) 248
BspPI GGATC 2 cut(s) 969, 1156
BspT107I GGYRCC 2 cut(s) 1356, 1851
BspTNI GGTCTC 1 cut(s) 1183
BsrDI GCAATG 1 cut(s) 1497
BsrFI RCCGGY 2 cut(s) 1359, 1435
BsrGI TGTACA 1 cut(s) 1299
BsrI ACTGG 2 cut(s) 857, 1194
BssAI RCCGGY 2 cut(s) 1359, 1435
BssECI CCNNGG 4 cut(s) 594, 669, 1144, 1800
BssMI GATC 9 cut(s) 85, 279, 690, 926, 961, 1148, 1553, 1681, 1764
BssNI GRCGYC 1 cut(s) 1852
BssT1I CCWWGG 2 cut(s) 669, 1800
Bst2UI CCWGG 3 cut(s) 359, 473, 1146
Bst4CI ACNGT 3 cut(s) 94, 168, 1299
Bst6I CTCTTC 4 cut(s) 333, 732, 779, 845
BstACI GRCGYC 1 cut(s) 1852
BstAPI GCANNNNNTGC 2 cut(s) 296, 506
BstAUI TGTACA 1 cut(s) 1299
BstC8I GCNNGC 6 cut(s) 246, 453, 482, 511, 1405, 1570
BstDEI CTNAG 4 cut(s) 348, 626, 1182, 1481
BstF5I GGATG 5 cut(s) 754, 911, 981, 1081, 1087
BstFNI CGCG 1 cut(s) 199
BstH2I RGCGCY 2 cut(s) 617, 1855
BstHHI GCGC 5 cut(s) 616, 754, 1526, 1816, 1854
BstKTI GATC 9 cut(s) 88, 282, 693, 929, 964, 1151, 1556, 1684, 1767
BstMAI GTCTC 4 cut(s) 776, 1183, 1587, 1693
BstMBI GATC 9 cut(s) 85, 279, 690, 926, 961, 1148, 1553, 1681, 1764
BstMWI GCNNNNNNNGC 7 cut(s) 296, 506, 622, 902, 908, 1211, 1477
BstNI CCWGG 3 cut(s) 359, 473, 1146
BstNSI RCATGY 1 cut(s) 64
BstSCI CCNGG 4 cut(s) 220, 357, 471, 1144
BstSFI CTRYAG 4 cut(s) 453, 657, 1041, 1405
BstUI CGCG 1 cut(s) 199
BstV1I GCAGC 7 cut(s) 116, 235, 467, 532, 914, 967, 1427
BstV2I GAAGAC 1 cut(s) 984
BstX2I RGATCY 2 cut(s) 926, 1148
BstXI CCANNNNNNTGG 1 cut(s) 1756
BstYI RGATCY 2 cut(s) 926, 1148
BsuRI GGCC 2 cut(s) 267, 1503
BtsCI GGATG 5 cut(s) 754, 911, 981, 1081, 1087
BtsI GCAGTG 3 cut(s) 666, 1567, 1579
BtsIMutI CAGTG 3 cut(s) 666, 1567, 1579
Cac8I GCNNGC 6 cut(s) 246, 453, 482, 511, 1405, 1570
CciI TCATGA 1 cut(s) 1865
CfoI GCGC 5 cut(s) 616, 754, 1526, 1816, 1854
Cfr10I RCCGGY 2 cut(s) 1359, 1435
Cfr13I GGNCC 1 cut(s) 1456
CsiI ACCWGGT 1 cut(s) 471
Csp6I GTAC 3 cut(s) 1300, 1357, 1439
CspAI ACCGGT 1 cut(s) 1435
CviAII CATG 9 cut(s) 24, 61, 921, 1004, 1274, 1339, 1412, 1685, 1866
CviQI GTAC 3 cut(s) 1300, 1357, 1439
DdeI CTNAG 4 cut(s) 348, 626, 1182, 1481
DinI GGCGCC 1 cut(s) 1853
DpnI GATC 9 cut(s) 87, 281, 692, 928, 963, 1150, 1555, 1683, 1766
DpnII GATC 9 cut(s) 85, 279, 690, 926, 961, 1148, 1553, 1681, 1764
EaeI YGGCCR 2 cut(s) 265, 1501
Eam1104I CTCTTC 4 cut(s) 333, 732, 779, 845
EarI CTCTTC 4 cut(s) 333, 732, 779, 845
EciI GGCGGA 2 cut(s) 240, 958
Eco130I CCWWGG 2 cut(s) 669, 1800
Eco31I GGTCTC 1 cut(s) 1183
Eco32I GATATC 1 cut(s) 1315
Eco47I GGWCC 1 cut(s) 1456
Eco47III AGCGCT 1 cut(s) 615
Eco57I CTGAAG 2 cut(s) 393, 1652
EcoO109I RGGNCCY 1 cut(s) 1456
EcoRII CCWGG 3 cut(s) 357, 471, 1144
EcoRV GATATC 1 cut(s) 1315
EcoT14I CCWWGG 2 cut(s) 669, 1800
EcoT22I ATGCAT 1 cut(s) 1774
EgeI GGCGCC 1 cut(s) 1853
EheI GGCGCC 1 cut(s) 1853
ErhI CCWWGG 2 cut(s) 669, 1800
FaeI CATG 9 cut(s) 27, 64, 924, 1007, 1277, 1342, 1415, 1688, 1869
FatI CATG 9 cut(s) 23, 60, 920, 1003, 1273, 1338, 1411, 1684, 1865
FbaI TGATCA 1 cut(s) 690
Fnu4HI GCNGC 7 cut(s) 105, 249, 456, 521, 903, 956, 1416
FokI GGATG 5 cut(s) 761, 898, 968, 1088, 1094
Fsp4HI GCNGC 7 cut(s) 105, 249, 456, 521, 903, 956, 1416
FspBI CTAG 6 cut(s) 81, 137, 245, 1253, 1590, 1647
FspI TGCGCA 1 cut(s) 753
GlaI GCGC 5 cut(s) 615, 753, 1525, 1815, 1853
GluI GCNGC 7 cut(s) 105, 249, 456, 521, 903, 956, 1416
HaeII RGCGCY 2 cut(s) 617, 1855
HaeIII GGCC 2 cut(s) 267, 1503
HapII CCGG 4 cut(s) 221, 1360, 1436, 1780
HhaI GCGC 5 cut(s) 616, 754, 1526, 1816, 1854
Hin1I GRCGYC 1 cut(s) 1852
Hin1II CATG 9 cut(s) 27, 64, 924, 1007, 1277, 1342, 1415, 1688, 1869
Hin6I GCGC 5 cut(s) 614, 752, 1524, 1814, 1852
HinP1I GCGC 5 cut(s) 614, 752, 1524, 1814, 1852
HindIII AAGCTT 3 cut(s) 112, 375, 1634
HinfI GANTC 9 cut(s) 157, 185, 205, 853, 1050, 1220, 1346, 1621, 1830
HpaII CCGG 4 cut(s) 221, 1360, 1436, 1780
HphI GGTGA 3 cut(s) 1224, 1322, 1738
Hpy166II GTNNAC 3 cut(s) 830, 1245, 1330
Hpy188I TCNGA 9 cut(s) 73, 147, 162, 598, 931, 1351, 1614, 1822, 1842
Hpy8I GTNNAC 3 cut(s) 830, 1245, 1330
HpyAV CCTTC 6 cut(s) 131, 570, 1168, 1336, 1753, 1842
HpyCH4III ACNGT 3 cut(s) 94, 168, 1299
HpyF10VI GCNNNNNNNGC 7 cut(s) 296, 506, 622, 902, 908, 1211, 1477
HpyF3I CTNAG 4 cut(s) 348, 626, 1182, 1481
Hsp92I GRCGYC 1 cut(s) 1852
Hsp92II CATG 9 cut(s) 27, 64, 924, 1007, 1277, 1342, 1415, 1688, 1869
HspAI GCGC 5 cut(s) 614, 752, 1524, 1814, 1852
KasI GGCGCC 1 cut(s) 1851
Kpn2I TCCGGA 1 cut(s) 1779
KpnI GGTACC 1 cut(s) 1360
Ksp22I TGATCA 1 cut(s) 690
Kzo9I GATC 9 cut(s) 85, 279, 690, 926, 961, 1148, 1553, 1681, 1764
LmnI GCTCC 3 cut(s) 227, 309, 1577
Lsp1109I GCAGC 7 cut(s) 116, 235, 467, 532, 914, 967, 1427
LweI GCATC 6 cut(s) 116, 739, 914, 920, 1021, 1613
MabI ACCWGGT 1 cut(s) 471
MaeI CTAG 6 cut(s) 81, 137, 245, 1253, 1590, 1647
MaeIII GTNAC 3 cut(s) 168, 1185, 1230
MalI GATC 9 cut(s) 87, 281, 692, 928, 963, 1150, 1555, 1683, 1766
MboI GATC 9 cut(s) 85, 279, 690, 926, 961, 1148, 1553, 1681, 1764
MfeI CAATTG 2 cut(s) 755, 897
MflI RGATCY 2 cut(s) 926, 1148
MlsI TGGCCA 2 cut(s) 267, 1503
MluNI TGGCCA 2 cut(s) 267, 1503
Mly113I GGCGCC 1 cut(s) 1852
MlyI GAGTC 3 cut(s) 862, 1214, 1340
Mox20I TGGCCA 2 cut(s) 267, 1503
Mph1103I ATGCAT 1 cut(s) 1774
MroI TCCGGA 1 cut(s) 1779
MroXI GAANNNNTTC 1 cut(s) 1263
MscI TGGCCA 2 cut(s) 267, 1503
MseI TTAA 5 cut(s) 678, 1106, 1530, 1710, 1785
MslI CAYNNNNRTG 1 cut(s) 1043
Msp20I TGGCCA 2 cut(s) 267, 1503
MspA1I CMGCKG 1 cut(s) 958
MspI CCGG 4 cut(s) 221, 1360, 1436, 1780
MspR9I CCNGG 4 cut(s) 222, 359, 473, 1146
MunI CAATTG 2 cut(s) 755, 897
Mva1269I GAATGC 2 cut(s) 1492, 1816
MvaI CCWGG 3 cut(s) 359, 473, 1146
MvnI CGCG 1 cut(s) 199
MwoI GCNNNNNNNGC 7 cut(s) 296, 506, 622, 902, 908, 1211, 1477
NarI GGCGCC 1 cut(s) 1852
NciI CCSGG 1 cut(s) 222
NdeII GATC 9 cut(s) 85, 279, 690, 926, 961, 1148, 1553, 1681, 1764
NheI GCTAGC 1 cut(s) 244
NlaIII CATG 9 cut(s) 27, 64, 924, 1007, 1277, 1342, 1415, 1688, 1869
NlaIV GGNNCC 3 cut(s) 582, 1358, 1853
NmuCI GTSAC 1 cut(s) 1230
NsbI TGCGCA 1 cut(s) 753
NsiI ATGCAT 1 cut(s) 1774
NspI RCATGY 1 cut(s) 64
OliI CACNNNNGTG 1 cut(s) 1043
PagI TCATGA 1 cut(s) 1865
PctI GAATGC 2 cut(s) 1492, 1816
PdmI GAANNNNTTC 1 cut(s) 1263
PfeI GAWTC 6 cut(s) 157, 185, 205, 1050, 1621, 1830
PinAI ACCGGT 1 cut(s) 1435
PkrI GCNGC 7 cut(s) 106, 250, 457, 522, 904, 957, 1417
PleI GAGTC 3 cut(s) 861, 1214, 1340
PluTI GGCGCC 1 cut(s) 1855
PpsI GAGTC 3 cut(s) 861, 1214, 1340
PpuMI RGGWCCY 1 cut(s) 1456
PshBI ATTAAT 2 cut(s) 1530, 1785
Psp5II RGGWCCY 1 cut(s) 1456
Psp6I CCWGG 3 cut(s) 357, 471, 1144
PspGI CCWGG 3 cut(s) 357, 471, 1144
PspN4I GGNNCC 3 cut(s) 582, 1358, 1853
PspPI GGNCC 1 cut(s) 1456
PspPPI RGGWCCY 1 cut(s) 1456
PstI CTGCAG 3 cut(s) 457, 661, 1409
PsuI RGATCY 2 cut(s) 926, 1148
PvuII CAGCTG 1 cut(s) 958
RsaI GTAC 3 cut(s) 1301, 1358, 1440
RsaNI GTAC 3 cut(s) 1300, 1357, 1439
RseI CAYNNNNRTG 1 cut(s) 1043
SaqAI TTAA 5 cut(s) 678, 1106, 1530, 1710, 1785
SatI GCNGC 7 cut(s) 105, 249, 456, 521, 903, 956, 1416
Sau3AI GATC 9 cut(s) 85, 279, 690, 926, 961, 1148, 1553, 1681, 1764
Sau96I GGNCC 1 cut(s) 1456
SchI GAGTC 3 cut(s) 862, 1214, 1340
ScrFI CCNGG 4 cut(s) 222, 359, 473, 1146
SexAI ACCWGGT 1 cut(s) 471
SfaNI GCATC 6 cut(s) 116, 739, 914, 920, 1021, 1613
SfcI CTRYAG 4 cut(s) 453, 657, 1041, 1405
SfoI GGCGCC 1 cut(s) 1853
SinI GGWCC 1 cut(s) 1456
SmiMI CAYNNNNRTG 1 cut(s) 1043
SsiI CCGC 2 cut(s) 225, 943
SspDI GGCGCC 1 cut(s) 1851
SspI AATATT 1 cut(s) 274
SspMI CTAG 6 cut(s) 81, 137, 245, 1253, 1590, 1647
StyD4I CCNGG 4 cut(s) 220, 357, 471, 1144
StyI CCWWGG 2 cut(s) 669, 1800
TaaI ACNGT 3 cut(s) 94, 168, 1299
TaqI TCGA 4 cut(s) 777, 878, 1137, 1624
TatI WGTACW 1 cut(s) 1299
TfiI GAWTC 6 cut(s) 157, 185, 205, 1050, 1621, 1830
Tru1I TTAA 5 cut(s) 678, 1106, 1530, 1710, 1785
Tru9I TTAA 5 cut(s) 678, 1106, 1530, 1710, 1785
TscAI CASTG 3 cut(s) 666, 1567, 1579
TseFI GTSAC 1 cut(s) 1230
TseI GCWGC 7 cut(s) 104, 248, 455, 520, 902, 955, 1415
Tsp45I GTSAC 1 cut(s) 1230
TspGWI ACGGA 2 cut(s) 296, 350
TspRI CASTG 3 cut(s) 666, 1567, 1579
VpaK11BI GGWCC 1 cut(s) 1456
VspI ATTAAT 2 cut(s) 1530, 1785
XapI RAATTY 1 cut(s) 699
XceI RCATGY 1 cut(s) 64
XmnI GAANNNNTTC 1 cut(s) 1263
XspI CTAG 6 cut(s) 81, 137, 245, 1253, 1590, 1647
Zsp2I ATGCAT 1 cut(s) 1774
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.