Rorug02G0352300

Sulfite exporter TauE/SafE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000447
Physical Location & Seq
Reverse (-)
44293931 .. 44294451
521 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0352300.1

Sequence Viewer

Length: 369 bp
ATGGGAAAGTTGACTAGCTTAAAGCATCTATATATTTGGGATTGTGATAAGCTGAGGTACTTACCGACAGGGATTGCAAGTTTGAAAAGTCTGGAAGCACTAGACAGCTTTTATGTATGTGAGGGTGATGATGAAGCATTGAAATTAGGAAATCTCGGAATCATGGACCGGCTTCCGGCATCTATATATTGGGGAGTAATGCGAAAGATGATGCGAAATTGCCATGGCACCGCCAAGTCTCTCCATTGGATCAGGCCATTACACAAGTTGAGAGAAGTTAATCTTGAAGGGTGGCAATTTTGTGAACTTTTGCCTCCTCTTGGAAAATTGCCATCTCTTGAAATTCTGGAAATTCAGTGGATGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TauE

Protein Analysis

122

Amino Acids

14.13

Weight (kDa)

6.9

Isoelectric Point (pI)

30.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 2 - 88 8.2e-06 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 77 - 121 1.9e-06 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000447)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25737 AT2G25737
fragaria_vesca FvH4_2g36080 FvH4_2g36080 FvH4_6g31610 FvH4_6g31610 FvH4_6g31610 FvH4_6g31610 FvH4_6g31650 FvH4_6g31650 FvH4_6g31650 FvH4_6g31850 FvH4_6g31850
malus_domestica MD08G1118000.v1.1 MD09G1210100.v1.1 MD09G1210300.v1.1 MD15G1097500.v1.1 MD17G1190800.v1.1 MD17G1192400.v1.1
prunus_persica Prupe.1G452300_v2.0.a1 Prupe.1G452300_v2.0.a1 Prupe.3G066100_v2.0.a1 Prupe.3G068200_v2.0.a1 Prupe.3G068200_v2.0.a1 Prupe.3G068200_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068400_v2.0.a1 Prupe.3G068400_v2.0.a1 Prupe.3G068400_v2.0.a1 Prupe.3G068400_v2.0.a1
pyrus_communis pycom08g09860 pycom09g12740 pycom09g12770 pycom15g08940 pycom17g19800 pycom17g19910
rosa_chinensis RchiOBHm_Chr2g0138671 RchiOBHm_Chr2g0138691 RchiOBHm_Chr2g0139111 RchiOBHm_Chr2g0139121 RchiOBHm_Chr2g0139161 RchiOBHm_Chr6g0305781 RchiOBHm_Chr7g0240101
rosa_laevigata RLG00000010859 RLG00000019753 RLG00000019756 RLG00000019792
rosa_multiflora Rmu_sc0001803.1_g000021 Rmu_sc0001803.1_g000022 Rmu_sc0001803.1_g000024 Rmu_sc0006243.1_g000011 Rmu_sc0007053.1_g000009 Rmu_sc0033335.1_g000001 Rmu_ssc0000210.1_g000006
rosa_roxburghii Rroxscaffold_2G00105610 Rroxscaffold_2G00106000 Rroxscaffold_2G00106020 Rroxscaffold_7G00162350
rosa_rugosa Rorug02G0352100 Rorug02G0352300 Rorug02G0352400 Rorug02G0354900 Rorug02G0355200 Rorug06G0344000
rosa_samantha Rh2AG401900 Rh2AG404900 Rh2AG405300 Rh2BG405700 Rh2BG405900 Rh2BG415400 Rh2BG415700 Rh2CG387900 Rh2CG388100 Rh2CG391200 Rh2CG391400 Rh2DG421800 Rh2DG422000 Rh2DG424700 Rh2DG424800 Rh2DG425100 Rh6AG455500 Rh6BG445600 Rh6CG469500 Rh6DG456200 Rh7DG471900
rosa_wichuraiana Rw2G032650 Rw2G032670 Rw2G033100 Rw6G039740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 227
AciI CCGC 1 cut(s) 231
AclWI GGATC 1 cut(s) 257
AcsI RAATTY 2 cut(s) 342, 351
AfaI GTAC 1 cut(s) 59
AfiI CCNNNNNNNGG 2 cut(s) 175, 320
AgsI TTSAA 4 cut(s) 85, 142, 287, 341
AluBI AGCT 3 cut(s) 18, 52, 108
AluI AGCT 3 cut(s) 18, 52, 108
Alw26I GTCTC 1 cut(s) 243
AlwI GGATC 1 cut(s) 257
AoxI GGCC 1 cut(s) 254
ApoI RAATTY 2 cut(s) 342, 351
AspS9I GGNCC 1 cut(s) 166
AsuHPI GGTGA 1 cut(s) 137
AvaII GGWCC 1 cut(s) 166
BanI GGYRCC 1 cut(s) 227
BbvCI CCTCAGC 1 cut(s) 53
BccI CCATC 2 cut(s) 340, 355
BcoDI GTCTC 1 cut(s) 243
BfaI CTAG 2 cut(s) 15, 101
Bme18I GGWCC 1 cut(s) 166
BmgT120I GGNCC 1 cut(s) 166
BmiI GGNNCC 1 cut(s) 229
BmsI GCATC 3 cut(s) 34, 188, 201
Bpu10I CCTNAGC 1 cut(s) 53
BsaJI CCNNGG 1 cut(s) 223
Bsc4I CCNNNNNNNGG 2 cut(s) 175, 320
Bse118I RCCGGY 1 cut(s) 168
BseDI CCNNGG 1 cut(s) 223
BseGI GGATG 1 cut(s) 366
BseLI CCNNNNNNNGG 2 cut(s) 175, 320
BseMII CTCAG 1 cut(s) 44
BseRI GAGGAG 1 cut(s) 306
BshFI GGCC 1 cut(s) 256
BshNI GGYRCC 1 cut(s) 227
BsiSI CCGG 2 cut(s) 169, 176
BslI CCNNNNNNNGG 2 cut(s) 175, 320
BsmAI GTCTC 1 cut(s) 243
BsnI GGCC 1 cut(s) 256
Bsp143I GATC 1 cut(s) 249
Bsp19I CCATGG 1 cut(s) 223
BspACI CCGC 1 cut(s) 231
BspANI GGCC 1 cut(s) 256
BspCNI CTCAG 1 cut(s) 45
BspLI GGNNCC 1 cut(s) 229
BspPI GGATC 1 cut(s) 257
BspT107I GGYRCC 1 cut(s) 227
BsrFI RCCGGY 1 cut(s) 168
BssAI RCCGGY 1 cut(s) 168
BssECI CCNNGG 1 cut(s) 223
BssMI GATC 1 cut(s) 249
BssT1I CCWWGG 1 cut(s) 223
BstDEI CTNAG 1 cut(s) 53
BstDSI CCRYGG 1 cut(s) 223
BstF5I GGATG 1 cut(s) 366
BstKTI GATC 1 cut(s) 252
BstMAI GTCTC 1 cut(s) 243
BstMBI GATC 1 cut(s) 249
BsuRI GGCC 1 cut(s) 256
BtgI CCRYGG 1 cut(s) 223
BtsCI GGATG 1 cut(s) 366
BtsIMutI CAGTG 1 cut(s) 362
Cfr10I RCCGGY 1 cut(s) 168
Cfr13I GGNCC 1 cut(s) 166
Csp6I GTAC 1 cut(s) 58
CviAII CATG 2 cut(s) 163, 224
CviJI RGCY 5 cut(s) 18, 52, 108, 172, 256
CviKI_1 RGCY 5 cut(s) 18, 52, 108, 172, 256
CviQI GTAC 1 cut(s) 58
DdeI CTNAG 1 cut(s) 53
DpnI GATC 1 cut(s) 251
DpnII GATC 1 cut(s) 249
Eco130I CCWWGG 1 cut(s) 223
Eco47I GGWCC 1 cut(s) 166
EcoT14I CCWWGG 1 cut(s) 223
ErhI CCWWGG 1 cut(s) 223
FaeI CATG 2 cut(s) 166, 227
FaiI YATR 8 cut(s) 31, 33, 114, 118, 164, 185, 187, 225
FalI AAGNNNNNCTT 2 cut(s) 267, 299
FatI CATG 2 cut(s) 162, 223
FspBI CTAG 2 cut(s) 15, 101
HaeIII GGCC 1 cut(s) 256
HapII CCGG 2 cut(s) 169, 176
Hin1II CATG 2 cut(s) 166, 227
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HinfI GANTC 1 cut(s) 159
HpaII CCGG 2 cut(s) 169, 176
HphI GGTGA 1 cut(s) 137
Hpy166II GTNNAC 2 cut(s) 12, 305
Hpy188I TCNGA 1 cut(s) 158
Hpy188III TCNNGA 4 cut(s) 92, 284, 338, 347
Hpy8I GTNNAC 2 cut(s) 12, 305
HpyAV CCTTC 1 cut(s) 281
HpyCH4V TGCA 1 cut(s) 77
HpyF3I CTNAG 1 cut(s) 53
Hsp92II CATG 2 cut(s) 166, 227
Kzo9I GATC 1 cut(s) 249
LpnPI CCDG 6 cut(s) 54, 77, 182, 189, 238, 332
LweI GCATC 3 cut(s) 34, 188, 201
MaeI CTAG 2 cut(s) 15, 101
MalI GATC 1 cut(s) 251
MboI GATC 1 cut(s) 249
MluCI AATT 6 cut(s) 143, 217, 296, 326, 342, 351
MnlI CCTC 4 cut(s) 48, 115, 324, 327
MseI TTAA 2 cut(s) 20, 279
MspI CCGG 2 cut(s) 169, 176
NcoI CCATGG 1 cut(s) 223
NdeII GATC 1 cut(s) 249
NlaIII CATG 2 cut(s) 166, 227
NlaIV GGNNCC 1 cut(s) 229
PfeI GAWTC 1 cut(s) 159
PspN4I GGNNCC 1 cut(s) 229
PspPI GGNCC 1 cut(s) 166
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
SaqAI TTAA 2 cut(s) 20, 279
Sau3AI GATC 1 cut(s) 249
Sau96I GGNCC 1 cut(s) 166
SetI ASST 4 cut(s) 20, 54, 59, 110
SfaNI GCATC 3 cut(s) 34, 188, 201
SinI GGWCC 1 cut(s) 166
Sse9I AATT 6 cut(s) 143, 217, 296, 326, 342, 351
SsiI CCGC 1 cut(s) 231
SspMI CTAG 2 cut(s) 15, 101
StyI CCWWGG 1 cut(s) 223
TasI AATT 6 cut(s) 143, 217, 296, 326, 342, 351
TfiI GAWTC 1 cut(s) 159
Tru1I TTAA 2 cut(s) 20, 279
Tru9I TTAA 2 cut(s) 20, 279
TscAI CASTG 1 cut(s) 362
TspDTI ATGAA 1 cut(s) 147
TspRI CASTG 1 cut(s) 362
VpaK11BI GGWCC 1 cut(s) 166
XapI RAATTY 2 cut(s) 342, 351
XspI CTAG 2 cut(s) 15, 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.